View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15029_low_13 (Length: 304)
Name: NF15029_low_13
Description: NF15029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15029_low_13 |
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| [»] scaffold0068 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 269; Significance: 1e-150; HSPs: 9)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 2 - 286
Target Start/End: Complemental strand, 42841021 - 42840737
Alignment:
| Q |
2 |
gttatgatcgtgtgaaagatgactataagatgattcggtgtacacattgttcttcacaaactaaccgtcgttttggtctacagttttcttccttctggga |
101 |
Q |
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| T |
42841021 |
gttatgatcgtgtgaaagatgactataagatgattcggtgtacacattgttcttcacaaactaaccgtcgttttggtctacagttttcttccttctcgga |
42840922 |
T |
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| Q |
102 |
gatttatagcctaaacaacaactcttggaggaaaattgattgcggtatgcatcattcagacaaatgcagcgaagaagtgtacatggatggagtgtctcat |
201 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |||||||| |
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| T |
42840921 |
gatttatagcctaaacaacaactcttggaggaaaattgattgcggtatgcatcattcagacaaatgcggtgaagaagtgtacatggatggaatgtctcat |
42840822 |
T |
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| Q |
202 |
tggtgggatatagaagtaacacatacatatttggtttcatttgacttcagcaatgaatcttttattacaacacccataccttctt |
286 |
Q |
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| T |
42840821 |
tggtgggatatagaagtaacacatacatatttggtttcatttgacttcagcaatgaatcttttattacaacacccataccttctt |
42840737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 178 - 262
Target Start/End: Original strand, 21699390 - 21699474
Alignment:
| Q |
178 |
gtgtacatggatggagtgtctcattggtgggatatagaagtaacacatacatatttggtttcatttgacttcagcaatgaatctt |
262 |
Q |
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| T |
21699390 |
gtgtacatggatggagtgtgtcattggtgggctaaaagagaagcacatgcatatttggtgtcatttgacttcagcaatgaatctt |
21699474 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 281
Target Start/End: Original strand, 42729895 - 42729998
Alignment:
| Q |
178 |
gtgtacatggatggagtgtctcattggtgggatatagaagtaacacatacatatttggtttcatttgacttcagcaatgaatcttttattacaacaccca |
277 |
Q |
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| T |
42729895 |
gtgtacatggatggagtgtgtaattggtgggctaaaatagaagcacatgcatatttggtgtcatttgacttcaacaatgaatcttgcattacaacactca |
42729994 |
T |
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| Q |
278 |
tacc |
281 |
Q |
| |
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|||| |
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| T |
42729995 |
tacc |
42729998 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 238 - 287
Target Start/End: Complemental strand, 41996434 - 41996385
Alignment:
| Q |
238 |
tcatttgacttcagcaatgaatcttttattacaacacccataccttctta |
287 |
Q |
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| T |
41996434 |
tcatttgacttcagcaatgaatctttcattacaacacccataccctctta |
41996385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 287
Target Start/End: Original strand, 42411627 - 42411738
Alignment:
| Q |
176 |
aagtgtacatggatggagtgtctcattgg-tgggatatagaagtaacacatacatatttggtttcatttgacttcagcaatgaatcttttattacaacac |
274 |
Q |
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||||||||||||||||||||||||||||| |||| | || || ||||| |||||||||||| || ||||||||||||| |||||||| |||| | || |
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| T |
42411627 |
aagtgtacatggatggagtgtctcattggttgggtgaaagtag-aacacgtacatatttggtgtcgtttgacttcagcagtgaatcttgcattaaattac |
42411725 |
T |
|
| Q |
275 |
ccataccttctta |
287 |
Q |
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||||||| ||||| |
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| T |
42411726 |
ccataccctctta |
42411738 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 229 - 287
Target Start/End: Complemental strand, 37408574 - 37408516
Alignment:
| Q |
229 |
tatttggtttcatttgacttcagcaatgaatcttttattacaacacccataccttctta |
287 |
Q |
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| T |
37408574 |
tatttggtgtcgtttgacttctgcaaggaatcttttattacaacacccataccctctta |
37408516 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 176 - 287
Target Start/End: Original strand, 42414567 - 42414678
Alignment:
| Q |
176 |
aagtgtacatggatggagtgtctcattggtgggat-atagaagtaacacatacatatttggtttcatttgacttcagcaatgaatcttttattacaacac |
274 |
Q |
| |
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|||||||||||||||||||||||||||||| | | | || || || |||| || |||||| |||||||||||||||| |||||||| |||| ||||| |
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| T |
42414567 |
aagtgtacatggatggagtgtctcattggttaggtgaaagtagaaa-acatccaagtttggtgtcatttgacttcagcagtgaatcttgcattataacac |
42414665 |
T |
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| Q |
275 |
ccataccttctta |
287 |
Q |
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||||||| ||||| |
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| T |
42414666 |
ccataccctctta |
42414678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 207
Target Start/End: Complemental strand, 41996533 - 41996504
Alignment:
| Q |
178 |
gtgtacatggatggagtgtctcattggtgg |
207 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
41996533 |
gtgtacatggatggagtgtctcattggtgg |
41996504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 97 - 141
Target Start/End: Complemental strand, 37408706 - 37408662
Alignment:
| Q |
97 |
tgggagatttatagcctaaacaacaactcttggaggaaaattgat |
141 |
Q |
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| T |
37408706 |
tgggagatgtatagcctaaacagtaactcttggaagaaaattgat |
37408662 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0068 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0068
Description:
Target: scaffold0068; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 178 - 262
Target Start/End: Complemental strand, 14520 - 14436
Alignment:
| Q |
178 |
gtgtacatggatggagtgtctcattggtgggatatagaagtaacacatacatatttggtttcatttgacttcagcaatgaatctt |
262 |
Q |
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||||||||||||||||||| ||||||||||| || | || | ||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
14520 |
gtgtacatggatggagtgtgtcattggtgggctaaaagagaagcacatgcatatttggtgtcatttgacttcagcaatgaatctt |
14436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 286843 - 286803
Alignment:
| Q |
1 |
ggttatgatcgtgtgaaagatgactataagatgattcggtg |
41 |
Q |
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| T |
286843 |
ggttatgatcatgttaaagatgactataaggtgattcggtg |
286803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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