View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15029_low_16 (Length: 259)

Name: NF15029_low_16
Description: NF15029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15029_low_16
NF15029_low_16
[»] chr3 (15 HSPs)
chr3 (1-242)||(44029043-44029284)
chr3 (1-123)||(33276903-33277025)
chr3 (1-123)||(10847829-10847951)
chr3 (55-125)||(11652302-11652372)
chr3 (45-120)||(44699784-44699859)
chr3 (55-125)||(46149638-46149708)
chr3 (55-120)||(17603182-17603247)
chr3 (55-120)||(21727503-21727568)
chr3 (60-120)||(48648217-48648277)
chr3 (63-125)||(48765052-48765114)
chr3 (72-114)||(46150720-46150762)
chr3 (55-120)||(17603935-17604000)
chr3 (87-120)||(37987247-37987280)
chr3 (72-113)||(45081394-45081435)
chr3 (72-120)||(55373697-55373745)
[»] chr1 (14 HSPs)
chr1 (1-123)||(37853055-37853177)
chr1 (55-125)||(24991978-24992048)
chr1 (80-114)||(37576943-37576977)
chr1 (55-120)||(24992718-24992783)
chr1 (82-125)||(19172576-19172619)
chr1 (86-120)||(13263521-13263555)
chr1 (86-128)||(46812192-46812234)
chr1 (55-125)||(47967870-47967940)
chr1 (80-113)||(19171798-19171831)
chr1 (63-120)||(25469068-25469125)
chr1 (71-120)||(25671183-25671232)
chr1 (57-114)||(43252502-43252559)
chr1 (63-114)||(4134047-4134099)
chr1 (60-120)||(50271762-50271822)
[»] chr6 (6 HSPs)
chr6 (56-114)||(505556-505613)
chr6 (63-120)||(19653983-19654040)
chr6 (61-105)||(21132699-21132743)
chr6 (56-120)||(10171289-10171353)
chr6 (56-120)||(26529487-26529551)
chr6 (60-120)||(33435353-33435413)
[»] chr8 (7 HSPs)
chr8 (55-120)||(32414497-32414562)
chr8 (55-125)||(28929854-28929924)
chr8 (63-125)||(31641520-31641582)
chr8 (80-120)||(26654376-26654416)
chr8 (72-114)||(17725644-17725686)
chr8 (55-105)||(39860141-39860191)
chr8 (56-120)||(8372927-8372991)
[»] chr4 (13 HSPs)
chr4 (55-120)||(55976180-55976245)
chr4 (55-125)||(55000696-55000766)
chr4 (55-120)||(19550300-19550365)
chr4 (71-120)||(31329707-31329756)
chr4 (55-125)||(24551704-24551774)
chr4 (63-113)||(43146692-43146742)
chr4 (60-125)||(24158799-24158864)
chr4 (63-120)||(47688461-47688518)
chr4 (64-125)||(53147880-53147941)
chr4 (63-120)||(53733713-53733770)
chr4 (55-120)||(55976929-55976994)
chr4 (60-112)||(37273172-37273224)
chr4 (72-120)||(55001431-55001479)
[»] chr2 (9 HSPs)
chr2 (55-120)||(16692947-16693012)
chr2 (82-125)||(40252031-40252074)
chr2 (55-120)||(15902855-15902920)
chr2 (70-120)||(9540345-9540395)
chr2 (80-114)||(18820452-18820486)
chr2 (54-120)||(22301842-22301908)
chr2 (79-124)||(8712001-8712046)
chr2 (71-112)||(34812845-34812886)
chr2 (72-120)||(12725605-12725653)
[»] chr5 (19 HSPs)
chr5 (60-120)||(7632108-7632168)
chr5 (55-133)||(1283473-1283551)
chr5 (55-113)||(9407270-9407328)
chr5 (60-113)||(31082722-31082775)
chr5 (56-120)||(234714-234778)
chr5 (56-120)||(237795-237859)
chr5 (72-120)||(19128783-19128831)
chr5 (60-120)||(22799738-22799798)
chr5 (60-120)||(27364465-27364525)
chr5 (63-125)||(235600-235662)
chr5 (55-125)||(1281844-1281914)
chr5 (54-120)||(1554055-1554121)
chr5 (61-107)||(16538965-16539011)
chr5 (72-133)||(10554547-10554608)
chr5 (72-121)||(27363764-27363813)
chr5 (55-115)||(1281947-1282007)
chr5 (72-120)||(6476781-6476829)
chr5 (60-120)||(19359717-19359777)
chr5 (56-120)||(19360450-19360514)
[»] chr7 (11 HSPs)
chr7 (55-120)||(13785567-13785632)
chr7 (48-120)||(38225942-38226014)
chr7 (67-114)||(31954279-31954326)
chr7 (57-120)||(43065092-43065155)
chr7 (54-120)||(1417621-1417687)
chr7 (60-114)||(47718924-47718978)
chr7 (55-125)||(47719678-47719748)
chr7 (55-112)||(23900336-23900393)
chr7 (63-120)||(24389598-24389655)
chr7 (63-120)||(25343221-25343278)
chr7 (72-120)||(7668495-7668543)
[»] scaffold0096 (1 HSPs)
scaffold0096 (56-120)||(39909-39973)


Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 44029284 - 44029043
Alignment:
Q  1 aaatgcggtgatggtgtgatcaaactcatgtggtgtatttagtaaattaatttggaccattagattaaaagaaataaatggttaggatttggtgtcaacg 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||    
T  44029284 aaatgcagtgatggtgtgatcaaactcatgtggtgtatttagtaaattaatttggaccattagattaaaagaaataaatggctaggattttgtgtcaacg 44029185  T
Q  101 aatccattgacacccggtgttaatgaatgcgtttgtggatatgttgtttgaccaaactaaataaatcatccataaatactaaatgaaacattgttcgacc 200  Q
    |||||||||||||| | ||| || | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||    
T  44029184 aatccattgacacctgatgtgaacggatgcttttgtggatatgttgtttgaccaaactaaataaatcatccataaatactaaatgagacattattcgacc 44029085  T
Q  201 acttctatcagctctcaacacctttcacttgacatatgaatg 242  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  44029084 acttctatcagctctcaacacctttcacttgacatatgaatg 44029043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 33277025 - 33276903
Alignment:
Q  1 aaatgcggtgatggtgtgatcaaactcatgtggtgtatttagtaaattaatttggaccattagattaaaagaaataaatggttaggatttggtgtcaacg 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  33277025 aaatgcagtgatggtgtgatcaaactcatgtggtgtatttagtaaattaatttggaccattagattaaaagaaataaatggctaggatttggtgtcaacg 33276926  T
Q  101 aatccattgacacccggtgttaa 123  Q
    |||||||||||||| | ||||||    
T  33276925 aatccattgacaccagatgttaa 33276903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 10847829 - 10847951
Alignment:
Q  1 aaatgcggtgatggtgtgatcaaactcatgtggtgtatttagtaaattaatttggaccattagattaaaagaaataaatggttaggatttggtgtcaacg 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |    
T  10847829 aaatgcagtgatggtgtgatcaaactcatgtggtgtatttagtaaattaatttggaccattagattaaaagaaataaatggctaggatttggtgtcaatg 10847928  T
Q  101 aatccattgacacccggtgttaa 123  Q
    ||||  |||||||| ||||||||    
T  10847929 aatctgttgacacctggtgttaa 10847951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 11652372 - 11652302
Alignment:
Q  55 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgttaatg 125  Q
    |||| |||||||||||||||| || | |||||||||||||||||||||||| |||||||| | ||||||||    
T  11652372 gacctttagattaaaagaaatgaacgcttaggatttggtgtcaacgaatccgttgacacctgatgttaatg 11652302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 45 - 120
Target Start/End: Original strand, 44699784 - 44699859
Alignment:
Q  45 aattaatt-tggaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    |||||||| |||||| ||||||||||| |||||||||||||  ||||||||||||||||||| |||||||| |||||    
T  44699784 aattaattatggacctttagattaaaa-aaataaatggttaatatttggtgtcaacgaatccgttgacacctggtgt 44699859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 46149708 - 46149638
Alignment:
Q  55 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgttaatg 125  Q
    |||| |||||||||||||||  || | ||| ||||||||||||||||||||||||||||| ||||| ||||    
T  46149708 gacctttagattaaaagaaacgaacgtttaagatttggtgtcaacgaatccattgacacctggtgtcaatg 46149638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 17603247 - 17603182
Alignment:
Q  55 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    |||| |||||||||||||||| || | ||| |||||||||||||||||||| |||||||| |||||    
T  17603247 gacctttagattaaaagaaatgaacgtttaagatttggtgtcaacgaatccgttgacacctggtgt 17603182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 21727503 - 21727568
Alignment:
Q  55 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    |||||||||||||| |||||| || | ||| |||||||||||||||||||| |||||||| |||||    
T  21727503 gaccattagattaagagaaatgaacgcttaagatttggtgtcaacgaatccgttgacacctggtgt 21727568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 48648277 - 48648217
Alignment:
Q  60 ttagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    |||||| ||||||||| || ||||| |||||||||||||||||||| |||||||| |||||    
T  48648277 ttagataaaaagaaatcaacggttaagatttggtgtcaacgaatccgttgacacctggtgt 48648217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 125
Target Start/End: Original strand, 48765052 - 48765114
Alignment:
Q  63 gattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgttaatg 125  Q
    ||||||||  ||| || ||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  48765052 gattaaaaacaatcaacggttaagatttggtgtcaacgaatccattgacacctggtgtcaatg 48765114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 46150720 - 46150762
Alignment:
Q  72 aaataaatggttaggatttggtgtcaacgaatccattgacacc 114  Q
    ||||||||||||  |||||||||||||||||||| ||||||||    
T  46150720 aaataaatggttgagatttggtgtcaacgaatccgttgacacc 46150762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 17603935 - 17604000
Alignment:
Q  55 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    |||| ||||||||||  |||| || | ||| |||||||||||||||||||| |||||||| |||||    
T  17603935 gacctttagattaaattaaatgaacgtttaagatttggtgtcaacgaatccgttgacacctggtgt 17604000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 87 - 120
Target Start/End: Complemental strand, 37987280 - 37987247
Alignment:
Q  87 atttggtgtcaacgaatccattgacacccggtgt 120  Q
    |||||||||||||||||||||||||||| |||||    
T  37987280 atttggtgtcaacgaatccattgacacctggtgt 37987247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 113
Target Start/End: Original strand, 45081394 - 45081435
Alignment:
Q  72 aaataaatggttaggatttggtgtcaacgaatccattgacac 113  Q
    ||||||||||||  |||||||||||||||||||| |||||||    
T  45081394 aaataaatggttgagatttggtgtcaacgaatccgttgacac 45081435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 55373697 - 55373745
Alignment:
Q  72 aaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    |||| ||||||| | ||||||||||||||||||| |||||||| |||||    
T  55373697 aaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgt 55373745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 95; Significance: 1e-46; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 1 - 123
Target Start/End: Original strand, 37853055 - 37853177
Alignment:
Q  1 aaatgcggtgatggtgtgatcaaactcatgtggtgtatttagtaaattaatttggaccattagattaaaagaaataaatggttaggatttggtgtcaacg 100  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||    
T  37853055 aaatgcagtgatggtgtgatcaaactcatgtggtgtatttagtaaattaatttggaccattagattaaaagaaataaatggctaaaatttggtgtcaacg 37853154  T
Q  101 aatccattgacacccggtgttaa 123  Q
    ||||| |||||||| | ||||||    
T  37853155 aatccgttgacacctgatgttaa 37853177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 24992048 - 24991978
Alignment:
Q  55 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgttaatg 125  Q
    |||| |||||||||| ||||| || | ||| |||||||||||||||||||| |||||||| ||||| ||||    
T  24992048 gacctttagattaaatgaaatgaacgtttatgatttggtgtcaacgaatccgttgacacctggtgtcaatg 24991978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 80 - 114
Target Start/End: Complemental strand, 37576977 - 37576943
Alignment:
Q  80 ggttaggatttggtgtcaacgaatccattgacacc 114  Q
    |||||||||||||||||||||||||||||||||||    
T  37576977 ggttaggatttggtgtcaacgaatccattgacacc 37576943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 24992718 - 24992783
Alignment:
Q  55 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    |||| |||||||||||||||| || | ||| |||||| ||||||||||||| |||||||| |||||    
T  24992718 gacctttagattaaaagaaatgaacgtttaagatttgatgtcaacgaatccgttgacacctggtgt 24992783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 82 - 125
Target Start/End: Original strand, 19172576 - 19172619
Alignment:
Q  82 ttaggatttggtgtcaacgaatccattgacacccggtgttaatg 125  Q
    |||||||||||||||||||||||| |||||||| ||||| ||||    
T  19172576 ttaggatttggtgtcaacgaatccgttgacacctggtgtcaatg 19172619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 120
Target Start/End: Original strand, 13263521 - 13263555
Alignment:
Q  86 gatttggtgtcaacgaatccattgacacccggtgt 120  Q
    ||||||||||||||||||||||||||||| |||||    
T  13263521 gatttggtgtcaacgaatccattgacacctggtgt 13263555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 86 - 128
Target Start/End: Original strand, 46812192 - 46812234
Alignment:
Q  86 gatttggtgtcaacgaatccattgacacccggtgttaatgaat 128  Q
    |||||||||||||||||||| |||||||| |||||||| ||||    
T  46812192 gatttggtgtcaacgaatccgttgacacctggtgttaacgaat 46812234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 47967940 - 47967870
Alignment:
Q  55 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgttaatg 125  Q
    |||| ||||||||| |||||| || | | | |||||||||||||||||||| |||||||| ||||| ||||    
T  47967940 gacctttagattaagagaaatgaacgctcaagatttggtgtcaacgaatccgttgacacctggtgtcaatg 47967870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 80 - 113
Target Start/End: Complemental strand, 19171831 - 19171798
Alignment:
Q  80 ggttaggatttggtgtcaacgaatccattgacac 113  Q
    |||||||||||||||||||||||||| |||||||    
T  19171831 ggttaggatttggtgtcaacgaatccgttgacac 19171798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 25469068 - 25469125
Alignment:
Q  63 gattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    ||||||||  ||| || ||||| |||||||||||||||||||| |||||||| |||||    
T  25469068 gattaaaaacaatcaacggttaagatttggtgtcaacgaatccgttgacacctggtgt 25469125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 120
Target Start/End: Complemental strand, 25671232 - 25671183
Alignment:
Q  71 gaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    ||||| ||||||||||||||||||| ||||||||| || ||||| |||||    
T  25671232 gaaatcaatggttaggatttggtgttaacgaatccgttaacaccaggtgt 25671183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 57 - 114
Target Start/End: Complemental strand, 43252559 - 43252502
Alignment:
Q  57 ccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacc 114  Q
    ||||||||| |||| ||||||| || || |||||||||||||| ||||| ||||||||    
T  43252559 ccattagatcaaaataaataaagggataagatttggtgtcaacaaatccgttgacacc 43252502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 63 - 114
Target Start/End: Complemental strand, 4134099 - 4134047
Alignment:
Q  63 gattaaaa-gaaataaatggttaggatttggtgtcaacgaatccattgacacc 114  Q
    |||||||| ||||| || ||||| ||||||||||||||||||||| |||||||    
T  4134099 gattaaaatgaaatgaaaggttaagatttggtgtcaacgaatccagtgacacc 4134047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 50271762 - 50271822
Alignment:
Q  60 ttagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    |||||| ||||||||| ||  |||| |||||||||||||||||| |||||| ||| |||||    
T  50271762 ttagatcaaaagaaatcaacagttaagatttggtgtcaacgaattcattgatacctggtgt 50271822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 56 - 114
Target Start/End: Complemental strand, 505613 - 505556
Alignment:
Q  56 accattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacc 114  Q
    ||||||||||||||| |||||||||||||| ||||||||||||||||||  ||||||||    
T  505613 accattagattaaaa-aaataaatggttagaatttggtgtcaacgaatctgttgacacc 505556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 120
Target Start/End: Complemental strand, 19654040 - 19653983
Alignment:
Q  63 gattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    |||||||  ||||||| ||||| |||||||||||||||| |||||||||||| |||||    
T  19654040 gattaaataaaataaacggttaagatttggtgtcaacgagtccattgacaccaggtgt 19653983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 61 - 105
Target Start/End: Complemental strand, 21132743 - 21132699
Alignment:
Q  61 tagattaaaagaaataaatggttaggatttggtgtcaacgaatcc 105  Q
    |||||||||| |||||||||||||||||||| |||||||| ||||    
T  21132743 tagattaaaaaaaataaatggttaggatttgatgtcaacggatcc 21132699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 10171353 - 10171289
Alignment:
Q  56 accattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    |||||| ||||||  |||||| | ||||  |||||||||||||||||||| |||||||| |||||    
T  10171353 accattggattaattgaaatagacggttgagatttggtgtcaacgaatccgttgacacctggtgt 10171289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 26529487 - 26529551
Alignment:
Q  56 accattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    |||||| ||||||  |||||| | ||||  |||||||||||||||||||| |||||||| |||||    
T  26529487 accattggattaattgaaatagacggttgagatttggtgtcaacgaatccgttgacacctggtgt 26529551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 33435413 - 33435353
Alignment:
Q  60 ttagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    |||||| ||||||||| ||  |||| |||||||||||||||||||| || ||||| |||||    
T  33435413 ttagataaaaagaaatcaacagttaagatttggtgtcaacgaatccgttaacaccaggtgt 33435353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 32414497 - 32414562
Alignment:
Q  55 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    |||||||||||||| |||||| || | ||| |||||||||||||||||||| |||||||| |||||    
T  32414497 gaccattagattaagagaaatgaacgcttaagatttggtgtcaacgaatccgttgacacctggtgt 32414562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 28929924 - 28929854
Alignment:
Q  55 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgttaatg 125  Q
    |||| |||||||||||||||| || | ||| |||||||||||||||||||| |||||| | ||||| ||||    
T  28929924 gacctttagattaaaagaaatgaaagtttaagatttggtgtcaacgaatccgttgacatctggtgtcaatg 28929854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 31641582 - 31641520
Alignment:
Q  63 gattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgttaatg 125  Q
    ||||||||  ||| || ||||| ||||||||||||||||||||||||||||| ||||| ||||    
T  31641582 gattaaaaacaatcaacggttaagatttggtgtcaacgaatccattgacacctggtgtcaatg 31641520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 80 - 120
Target Start/End: Original strand, 26654376 - 26654416
Alignment:
Q  80 ggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    ||||| ||||||||||||||||||||||||||||| |||||    
T  26654376 ggttaagatttggtgtcaacgaatccattgacacctggtgt 26654416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 72 - 114
Target Start/End: Original strand, 17725644 - 17725686
Alignment:
Q  72 aaataaatggttaggatttggtgtcaacgaatccattgacacc 114  Q
    |||||||||| ||||||||||||||||||||| | ||||||||    
T  17725644 aaataaatggataggatttggtgtcaacgaattcgttgacacc 17725686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 39860191 - 39860141
Alignment:
Q  55 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatcc 105  Q
    |||||||||||||| |||||| || | ||| ||||||||||||||||||||    
T  39860191 gaccattagattaagagaaatgaacgcttaagatttggtgtcaacgaatcc 39860141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 8372991 - 8372927
Alignment:
Q  56 accattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    |||||||||| ||| ||||| || | |||  ||||||||||||||||||| |||||||| |||||    
T  8372991 accattagatcaaacgaaatcaacgattaatatttggtgtcaacgaatccgttgacaccaggtgt 8372927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 55976245 - 55976180
Alignment:
Q  55 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    |||| |||||||||||||||| || | ||| |||||||||||||||||||| |||||||| |||||    
T  55976245 gacctttagattaaaagaaatgaacgtttaagatttggtgtcaacgaatccgttgacacctggtgt 55976180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 55000766 - 55000696
Alignment:
Q  55 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgttaatg 125  Q
    |||| |||||||||||||||| || | ||| |||||||||||||||||||| |||||| | ||||| ||||    
T  55000766 gacctttagattaaaagaaatgaacgtttaagatttggtgtcaacgaatccgttgacatctggtgtcaatg 55000696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 120
Target Start/End: Complemental strand, 19550365 - 19550300
Alignment:
Q  55 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    |||||||||||||| |||||| || | |||  ||||||||||||||||||| |||||||| |||||    
T  19550365 gaccattagattaagagaaatgaacgcttaaaatttggtgtcaacgaatccgttgacacctggtgt 19550300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 71 - 120
Target Start/End: Original strand, 31329707 - 31329756
Alignment:
Q  71 gaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    ||||| ||||||||||||||||||| ||||||||| |||||||| |||||    
T  31329707 gaaatcaatggttaggatttggtgttaacgaatccgttgacacctggtgt 31329756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 24551774 - 24551704
Alignment:
Q  55 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgttaatg 125  Q
    |||| |||||||||| ||||| || | |||||||||| ||||||||||||| | |||||| ||||| ||||    
T  24551774 gacctttagattaaatgaaatgaacgtttaggatttgatgtcaacgaatccgtcgacacctggtgtcaatg 24551704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 113
Target Start/End: Complemental strand, 43146742 - 43146692
Alignment:
Q  63 gattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacac 113  Q
    |||||||  ||||||| ||||| |||||||||||||||||||| |||||||    
T  43146742 gattaaataaaataaacggttaagatttggtgtcaacgaatccgttgacac 43146692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 60 - 125
Target Start/End: Original strand, 24158799 - 24158864
Alignment:
Q  60 ttagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgttaatg 125  Q
    |||||| ||| ||||| || ||||| |||||||||||||||||||  |||||||| ||||| ||||    
T  24158799 ttagatcaaatgaaatcaacggttaagatttggtgtcaacgaatctgttgacacctggtgtcaatg 24158864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 47688461 - 47688518
Alignment:
Q  63 gattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    |||||||  ||||||| ||||  |||||||||||||||||||| |||||||| |||||    
T  47688461 gattaaataaaataaacggttgagatttggtgtcaacgaatccgttgacacctggtgt 47688518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 53147941 - 53147880
Alignment:
Q  64 attaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgttaatg 125  Q
    |||||||  |||||| |||| ||||||||||||||||||||| |||||| | ||||| ||||    
T  53147941 attaaaaacaataaacggttgggatttggtgtcaacgaatccgttgacatctggtgtcaatg 53147880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 53733713 - 53733770
Alignment:
Q  63 gattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    ||||||| |||||| ||||||   ||||||||||||||||||| |||||||| |||||    
T  53733713 gattaaatgaaatagatggttgaaatttggtgtcaacgaatccgttgacacctggtgt 53733770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 55976929 - 55976994
Alignment:
Q  55 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    |||| ||||||||||  |||| || | ||| |||||||||||||||||||| |||||||| |||||    
T  55976929 gacctttagattaaattaaatgaacgtttaagatttggtgtcaacgaatccgttgacacctggtgt 55976994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 112
Target Start/End: Complemental strand, 37273224 - 37273172
Alignment:
Q  60 ttagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgaca 112  Q
    ||||||||||| |||| || | ||| ||||||||||||||| |||||||||||    
T  37273224 ttagattaaaaaaaatgaacgtttaagatttggtgtcaacggatccattgaca 37273172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 55001431 - 55001479
Alignment:
Q  72 aaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    ||||||| ||||| ||||| |||||||||||||| |||||||| |||||    
T  55001431 aaataaacggttaagatttagtgtcaacgaatccgttgacacctggtgt 55001479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 16692947 - 16693012
Alignment:
Q  55 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    |||||||||||||| |||||| || | ||| |||||||||||||||||||| |||||||| |||||    
T  16692947 gaccattagattaagagaaatgaacgcttaagatttggtgtcaacgaatccgttgacacctggtgt 16693012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 125
Target Start/End: Complemental strand, 40252074 - 40252031
Alignment:
Q  82 ttaggatttggtgtcaacgaatccattgacacccggtgttaatg 125  Q
    |||||||||||||||||||||||| |||||||| ||||||||||    
T  40252074 ttaggatttggtgtcaacgaatccgttgacacctggtgttaatg 40252031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 15902855 - 15902920
Alignment:
Q  55 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    |||||||||||||| |||||| || | ||| ||||| |||||||||||||| |||||||| |||||    
T  15902855 gaccattagattaagagaaatgaacgcttaagattttgtgtcaacgaatccgttgacacctggtgt 15902920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 70 - 120
Target Start/End: Complemental strand, 9540395 - 9540345
Alignment:
Q  70 agaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    |||||| |||||||| |||||||||||||||||| | |||||||| |||||    
T  9540395 agaaatcaatggttaagatttggtgtcaacgaattcgttgacacctggtgt 9540345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 80 - 114
Target Start/End: Complemental strand, 18820486 - 18820452
Alignment:
Q  80 ggttaggatttggtgtcaacgaatccattgacacc 114  Q
    |||||||||||||||||||||||||| ||||||||    
T  18820486 ggttaggatttggtgtcaacgaatccgttgacacc 18820452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 22301842 - 22301908
Alignment:
Q  54 ggaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    ||||| || ||||||| | | |||||||||| |||||||||||||||||| | |||||||| |||||    
T  22301842 ggacccttggattaaatgtattaaatggttaagatttggtgtcaacgaattcgttgacacctggtgt 22301908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 8712001 - 8712046
Alignment:
Q  79 tggttaggatttggtgtcaacgaatccattgacacccggtgttaat 124  Q
    ||||| |||||||||||||||||||| ||||||| | |||||||||    
T  8712001 tggttgggatttggtgtcaacgaatctattgacatctggtgttaat 8712046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 71 - 112
Target Start/End: Original strand, 34812845 - 34812886
Alignment:
Q  71 gaaataaatggttaggatttggtgtcaacgaatccattgaca 112  Q
    ||||| ||||||||||||||||||| ||||||||| ||||||    
T  34812845 gaaatcaatggttaggatttggtgttaacgaatccgttgaca 34812886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 12725605 - 12725653
Alignment:
Q  72 aaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    |||| ||||||| ||||||||||||||| ||||| |||||||| |||||    
T  12725605 aaatgaatggttgggatttggtgtcaacaaatccgttgacacctggtgt 12725653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 7632168 - 7632108
Alignment:
Q  60 ttagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    |||||| |||| |||||||||| || |||||||||||||||||||| |||||||| |||||    
T  7632168 ttagatcaaaataaataaatggataagatttggtgtcaacgaatccgttgacacctggtgt 7632108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 133
Target Start/End: Original strand, 1283473 - 1283551
Alignment:
Q  55 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgttaatgaatgcgtt 133  Q
    |||| ||||||||||| |||| || | ||| |||||||||||||||||||| |||||||| ||||| || |||| ||||    
T  1283473 gacctttagattaaaataaatgaacgtttaagatttggtgtcaacgaatccgttgacacctggtgtcaacgaatccgtt 1283551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 113
Target Start/End: Complemental strand, 9407328 - 9407270
Alignment:
Q  55 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacac 113  Q
    |||| |||||||||||||||| || | ||| |||||||||||||||||||| |||||||    
T  9407328 gacctttagattaaaagaaatgaacgcttaagatttggtgtcaacgaatccgttgacac 9407270  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 60 - 113
Target Start/End: Original strand, 31082722 - 31082775
Alignment:
Q  60 ttagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacac 113  Q
    |||||| ||||||||| ||| |||| |||||||||||||||||| |||||||||    
T  31082722 ttagatcaaaagaaatcaatagttaagatttggtgtcaacgaattcattgacac 31082775  T

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Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 234778 - 234714
Alignment:
Q  56 accattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    |||||||||| ||| ||||| || |||||  ||||||||||||||||||| |||||||| |||||    
T  234778 accattagataaaacgaaatcaacggttaatatttggtgtcaacgaatccgttgacacctggtgt 234714  T

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Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 237795 - 237859
Alignment:
Q  56 accattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    |||||||||| ||| ||||| || |||||  ||||||||||||||||||| |||||||| |||||    
T  237795 accattagatgaaacgaaatcaacggttaatatttggtgtcaacgaatccgttgacacctggtgt 237859  T

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Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 19128831 - 19128783
Alignment:
Q  72 aaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    ||||||| ||||| |||||||||||||||||||| |||||||| |||||    
T  19128831 aaataaacggttaagatttggtgtcaacgaatccgttgacacctggtgt 19128783  T

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Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 22799738 - 22799798
Alignment:
Q  60 ttagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    |||||| ||||||||| ||  |||| |||||||||||||||||| |||||||||| |||||    
T  22799738 ttagatcaaaagaaatcaacagttaagatttggtgtcaacgaattcattgacacctggtgt 22799798  T

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Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 120
Target Start/End: Original strand, 27364465 - 27364525
Alignment:
Q  60 ttagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    ||||||||||  || | |||||||  ||||||||||||||||||||||||||||| |||||    
T  27364465 ttagattaaaccaatttaatggttgagatttggtgtcaacgaatccattgacacctggtgt 27364525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 63 - 125
Target Start/End: Complemental strand, 235662 - 235600
Alignment:
Q  63 gattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgttaatg 125  Q
    ||||||| |||||| | ||||  |||||||||||||||||||| |||||||| ||||| ||||    
T  235662 gattaaatgaaatagacggttgagatttggtgtcaacgaatccgttgacacctggtgtcaatg 235600  T

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Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 125
Target Start/End: Complemental strand, 1281914 - 1281844
Alignment:
Q  55 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgttaatg 125  Q
    |||| ||||||||||  |||| || | ||| |||||||||||||||||||| |||||||| ||||| ||||    
T  1281914 gacctttagattaaattaaatgaacgtttaagatttggtgtcaacgaatccgttgacacctggtgtcaatg 1281844  T

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Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 120
Target Start/End: Original strand, 1554055 - 1554121
Alignment:
Q  54 ggaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    ||||| || ||||||| | | |||||||||| |||||||||||||||||| | |||||||| |||||    
T  1554055 ggacccttggattaaatgtattaaatggttaagatttggtgtcaacgaattcgttgacacctggtgt 1554121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 16538965 - 16539011
Alignment:
Q  61 tagattaaaagaaataaatggttaggatttggtgtcaacgaatccat 107  Q
    ||||||||||||||| || | ||| ||||||||||||||||||||||    
T  16538965 tagattaaaagaaatgaacgtttaagatttggtgtcaacgaatccat 16539011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 133
Target Start/End: Complemental strand, 10554608 - 10554547
Alignment:
Q  72 aaataaatggttaggatttggtgtcaacgaatccattgacacccggtgttaatgaatgcgtt 133  Q
    |||| |||||||  |||||||||||||||||||| |||||||| ||||| || |||| ||||    
T  10554608 aaatgaatggttgagatttggtgtcaacgaatccgttgacacctggtgtcaacgaatccgtt 10554547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 72 - 121
Target Start/End: Original strand, 27363764 - 27363813
Alignment:
Q  72 aaataaatggttaggatttggtgtcaacgaatccattgacacccggtgtt 121  Q
    |||| ||||||| | ||||||||||||||||||| |||||||| ||||||    
T  27363764 aaatgaatggttggaatttggtgtcaacgaatccgttgacacctggtgtt 27363813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 115
Target Start/End: Complemental strand, 1282007 - 1281947
Alignment:
Q  55 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacaccc 115  Q
    |||| ||||||||||  |||| || | ||| |||||||||||||||||||| |||||||||    
T  1282007 gacctttagattaaattaaattaacgtttaagatttggtgtcaacgaatccgttgacaccc 1281947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 6476781 - 6476829
Alignment:
Q  72 aaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    |||| |||||||  |||||||||||||||||||| |||||||| |||||    
T  6476781 aaatgaatggttgagatttggtgtcaacgaatccgttgacacctggtgt 6476829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 60 - 120
Target Start/End: Complemental strand, 19359777 - 19359717
Alignment:
Q  60 ttagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    |||||| ||| ||||| || |||||  ||||||||||||||||||| |||||||| |||||    
T  19359777 ttagatcaaacgaaatcaacggttaatatttggtgtcaacgaatccgttgacacctggtgt 19359717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 120
Target Start/End: Original strand, 19360450 - 19360514
Alignment:
Q  56 accattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    |||||||||| ||| ||||| || |||||  ||||||||||||||||| | |||||||| |||||    
T  19360450 accattagatcaaacgaaatcaacggttaatatttggtgtcaacgaattcgttgacacctggtgt 19360514  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 120
Target Start/End: Original strand, 13785567 - 13785632
Alignment:
Q  55 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    |||| ||||||||| |||||| || | ||| |||||||||||||||||||| |||||||| |||||    
T  13785567 gacctttagattaagagaaattaacgcttaagatttggtgtcaacgaatccgttgacacctggtgt 13785632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 48 - 120
Target Start/End: Original strand, 38225942 - 38226014
Alignment:
Q  48 taatttggaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    |||| |||||| || ||||||| | | |||||||||| |||||||||||||||||| | |||||||| |||||    
T  38225942 taatctggacccttggattaaatgtattaaatggttaagatttggtgtcaacgaattcgttgacacctggtgt 38226014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 67 - 114
Target Start/End: Original strand, 31954279 - 31954326
Alignment:
Q  67 aaaagaaataaatggttaggatttggtgtcaacgaatccattgacacc 114  Q
    ||||||||| || ||||| |||||||||||||||||||| ||||||||    
T  31954279 aaaagaaatcaacggttaagatttggtgtcaacgaatccgttgacacc 31954326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 120
Target Start/End: Original strand, 43065092 - 43065155
Alignment:
Q  57 ccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    ||||||||| |||| ||||||| ||  | |||||||||||||||||||| |||||||| |||||    
T  43065092 ccattagatcaaaataaataaagggacaagatttggtgtcaacgaatccgttgacacctggtgt 43065155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 54 - 120
Target Start/End: Complemental strand, 1417687 - 1417621
Alignment:
Q  54 ggaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    ||||| || ||||||| | | |||||||||| |||||||||||||||||| | |||||||| |||||    
T  1417687 ggacccttggattaaatgtattaaatggttaagatttggtgtcaacgaattcgttgacacctggtgt 1417621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 114
Target Start/End: Complemental strand, 47718978 - 47718924
Alignment:
Q  60 ttagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacc 114  Q
    |||||||||||||||| ||   ||| |||||||||||||||||||| ||||||||    
T  47718978 ttagattaaaagaaatgaacatttaagatttggtgtcaacgaatccgttgacacc 47718924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 125
Target Start/End: Original strand, 47719678 - 47719748
Alignment:
Q  55 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgttaatg 125  Q
    |||| ||||||||||  |||| || | ||| |||||||||||||||||||| |||||||| ||||| ||||    
T  47719678 gacctttagattaaattaaatgaacgtttaagatttggtgtcaacgaatccgttgacacctggtgtcaatg 47719748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 23900393 - 23900336
Alignment:
Q  55 gaccattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgaca 112  Q
    |||| |||||||||| ||||| || | ||||||||||| |||||||||||| ||||||    
T  23900393 gacctttagattaaatgaaatgaacgtttaggatttggagtcaacgaatccgttgaca 23900336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 24389598 - 24389655
Alignment:
Q  63 gattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    |||||||  ||||||||||||  ||||||||||||| |||||| |||||||| |||||    
T  24389598 gattaaataaaataaatggttgagatttggtgtcaatgaatccgttgacacctggtgt 24389655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 63 - 120
Target Start/End: Original strand, 25343221 - 25343278
Alignment:
Q  63 gattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    |||||||| ||||  ||||||  |||||||||||||||||| |||||||||| |||||    
T  25343221 gattaaaaaaaattgatggttgagatttggtgtcaacgaattcattgacacctggtgt 25343278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 7668543 - 7668495
Alignment:
Q  72 aaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    |||| |||||||  |||||||||||||||||||| |||||||| |||||    
T  7668543 aaatgaatggttgagatttggtgtcaacgaatccgttgacacctggtgt 7668495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0096 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0096
Description:

Target: scaffold0096; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 120
Target Start/End: Complemental strand, 39973 - 39909
Alignment:
Q  56 accattagattaaaagaaataaatggttaggatttggtgtcaacgaatccattgacacccggtgt 120  Q
    |||||||||| ||| ||||| || | |||  ||||||||||||||||||| |||||||| |||||    
T  39973 accattagatcaaacgaaatcaacgattaatatttggtgtcaacgaatccgttgacacctggtgt 39909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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