View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15029_low_19 (Length: 228)
Name: NF15029_low_19
Description: NF15029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15029_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 19 - 218
Target Start/End: Complemental strand, 1680746 - 1680547
Alignment:
| Q |
19 |
cttcaggctcatttttcaaggcagtctgtaggtgggaaccttgcattggaccagagagaggtgttgctttctgcaaataaactgcttcaggcaatggtgg |
118 |
Q |
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| T |
1680746 |
cttcaggctcatttttcaaggcagtctgtaggtgggaaccttgcattggaccagagagaggtgttgctttctgcaaataaactgcttcaggcattggtgg |
1680647 |
T |
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| Q |
119 |
atgtaatatcgagcaatggttggctgagtttggctcttcttgctatggaagttagtcaaatggtgacacaaggattgtggggacgtgactctgtgctgct |
218 |
Q |
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| T |
1680646 |
atgtaatatcgagcaatggttggctgagtttggctcttcttgctatggaagttagtcaaatgatgacacaaggattgtggggacgtgactctatgctgct |
1680547 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 19 - 218
Target Start/End: Original strand, 2799982 - 2800181
Alignment:
| Q |
19 |
cttcaggctcatttttcaaggcagtctgtaggtgggaaccttgcattggaccagagagaggtgttgctttctgcaaataaactgcttcaggcaatggtgg |
118 |
Q |
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| T |
2799982 |
cttcaggctcatttttcatggcagtttgtaggtgggaaccttgcattggaccagagagaggtgttgctttctgcaaataaactgcttcaggcattggtgg |
2800081 |
T |
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| Q |
119 |
atgtaatatcgagcaatggttggctgagtttggctcttcttgctatggaagttagtcaaatggtgacacaaggattgtggggacgtgactctgtgctgct |
218 |
Q |
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| T |
2800082 |
atgtaatatcgagcaatggttggctgagtttggctcttcttgctatggaagttagtcaaatgttgacacaaggattgtggggacgtgactctatgctgct |
2800181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 22 - 199
Target Start/End: Original strand, 29269161 - 29269338
Alignment:
| Q |
22 |
caggctcatttttcaaggcagtctgtaggtgggaaccttgcattggaccagagagaggtgttgctttctgcaaataaactgcttcaggcaatggtggatg |
121 |
Q |
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| T |
29269161 |
caggcccatttctctaggcaatctgttggtgggaatctatcattggaccagagggaggtactgctttctgcaaacaggcttctgcaggcaatggttgatg |
29269260 |
T |
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| Q |
122 |
taatatcgagcaatggttggctgagtttggctcttcttgctatggaagttagtcaaatggtgacacaaggattgtggg |
199 |
Q |
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| T |
29269261 |
taatatcgagcaacggttggctgagcatggctcttcttgccatggaggtaagccaaatggtaacccaaggaatgtggg |
29269338 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 67; Significance: 6e-30; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 113 - 210
Target Start/End: Original strand, 40469599 - 40469694
Alignment:
| Q |
113 |
tggtggatgtaatatcgagcaatggttggctgagtttggctcttcttgctatggaagttagtcaaatggtgacacaaggattgtggggacgtgactct |
210 |
Q |
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|||||||||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| | |||||| |
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| T |
40469599 |
tggtggatgtaatatcaagcaatggttgcctgagtttggctcttcttg--ttggaagttagtcaaatggtgacacaaggattgtggggatgcgactct |
40469694 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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