View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15029_low_3 (Length: 548)
Name: NF15029_low_3
Description: NF15029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15029_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 2 - 529
Target Start/End: Complemental strand, 2794178 - 2793651
Alignment:
| Q |
2 |
atcaacatccttctcatcatcatcttcattctcttcaaattccactgcaacaccgtcaaaagaatcaaaaccaccctcaacatcctcaaactccagaaaa |
101 |
Q |
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| T |
2794178 |
atcaacatccttctcatcatcatcttcattctcttcaaattccactgcaacaccgtcaaaagaatcaaaaccaccctccacatcctcaaactccagaaaa |
2794079 |
T |
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| Q |
102 |
tcagttataacctttccaatcgaaacaaggtgattaaacacagtatcagtgatagggttaagcagtttctcaatgttaatcttcttgtcaccaatagagt |
201 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
2794078 |
tcagttataagctttccaatcgaaacaaggtgattaaacacagtatcagtgatagggttaagcagtttctcaatgttaatcttcttgtcaccaacagagt |
2793979 |
T |
|
| Q |
202 |
cgtttttcagaatggaaagaatctcatcagcagcacctctgataatcccaagcggctgaccaccaaaccgctgctggattacactcaacatcgcctcata |
301 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2793978 |
cgtttttcagaatggaaagaatctcatcagcagcacctctgataatcccaagcggctgaccaccaaaccgctgctggattacactcaacatcgcctcata |
2793879 |
T |
|
| Q |
302 |
agcagcacgagtttccttcgtctttggctcgtaaacaccgtcatcaatggcattgagtacactctggctttcgctctgaagacgacgctgtttgttccga |
401 |
Q |
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||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
2793878 |
agcagcacgagtttccttcgtctttggctcgtaaacaccgttatcaacggcattgagtacactctggctttcgctctgaagacgacgctgtttgttccta |
2793779 |
T |
|
| Q |
402 |
cgataacctccggagtcagattcatcgattaggtttctcttaggaggacggttacgaaaagcacgatcgccaaaaaccttgagatcgattctaccggaaa |
501 |
Q |
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| T |
2793778 |
cgataacctccggagtcaaattcatcgattaggtttctcttaggaggacggttacgaaaagcacgatcgccaaaaaccttgagatcgattctaccggaaa |
2793679 |
T |
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| Q |
502 |
gtgattctggttcgccggcggtccgttc |
529 |
Q |
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| T |
2793678 |
gtgattctggttcgccggtggtccgttc |
2793651 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 254 - 347
Target Start/End: Complemental strand, 29261349 - 29261256
Alignment:
| Q |
254 |
cggctgaccaccaaaccgctgctggattacactcaacatcgcctcataagcagcacgagtttccttcgtctttggctcgtaaacaccgtcatca |
347 |
Q |
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| T |
29261349 |
cggctgaccaccaagctgttgctgaatcacactcaacatagcttcataagctgctcttgtctccttcgtcttcggctgataaacaccgtcatca |
29261256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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