View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15029_low_4 (Length: 527)
Name: NF15029_low_4
Description: NF15029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15029_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 504
Target Start/End: Original strand, 29206136 - 29206659
Alignment:
| Q |
1 |
cgtctaattaagtggagctaggctatatggtacaaaagctctcaagttttctctctatggcat----------------aacatgcatgaaattaatgtg |
84 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||| |
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| T |
29206136 |
cgtctaattaagtggagctaggctatatggtacaaaagctcttaagttttctctctatggcatggcatggatagtgtacaacatgcatgaaattaatgtg |
29206235 |
T |
|
| Q |
85 |
acattatagatgcttctcttcgcaactgtataaagcttctatttaatggggttgttaagagcttgatgaccacattggtgcatgttgtaaaatccattgc |
184 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29206236 |
acattatagatgcttctcttcgcaactgtataaagcttctatttaatggggttgttaagagcttgatgaccacattggtgcatgttgtaaaatccattgc |
29206335 |
T |
|
| Q |
185 |
cagaggtgcagctccagcacttgctactcatcatgtgaatgcatgattctcttggaactgttctgtttgatctgcaactcaaattttttctctattaaga |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29206336 |
cagaggtgcagctccagcacttgctactcatcatgtgaatgcatgattctcttggaactgttctgtttgatctgcaactcaaattttttctctattaaga |
29206435 |
T |
|
| Q |
285 |
tctttttatagttaatgaaaatattata--caaattattatgttagtaaatgcannnnnnnnactcaattagttagtaaaccgg---nnnnnnnnttaga |
379 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||| ||||| |
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| T |
29206436 |
tctttttatagttaatgaaaatattatatgaaaattattatgttagtaaatgca-tttttttactcaattagttagtaaaccggaaaaaaaaaaattaga |
29206534 |
T |
|
| Q |
380 |
cattgattatcattagaccggctttgccaaatgtagtgcaattctacagatatgaaattttgtttcaaagagtttagcgaccatactccctgtataaaag |
479 |
Q |
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| T |
29206535 |
cattgattatcattagaccggctttgccaaatgtagtgcaattctacagatatgaaattttgtttcaaagagtttagcgactatactccctgcataaaag |
29206634 |
T |
|
| Q |
480 |
atttccaatgtgcttgcacacatac |
504 |
Q |
| |
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| T |
29206635 |
atttccaatgtgcttgcacacatac |
29206659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 129 - 266
Target Start/End: Complemental strand, 38379783 - 38379646
Alignment:
| Q |
129 |
aatggggttgttaagagcttgatgaccacattggtgcatgttgtaaaatccattgccagaggtgcagctccagcacttgctactcatcatgtgaatgcat |
228 |
Q |
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||||| |||||| |||| ||||||||||||||||| |||||||| |||||||||||| | | |||||||| |||||||||||||||||||| |||||| |
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| T |
38379783 |
aatggagttgttgagagtttgatgaccacattggtcaatgttgtagaatccattgccaaaagcacagctccaacacttgctactcatcatgtggatgcat |
38379684 |
T |
|
| Q |
229 |
gattctcttggaactgttctgtttgatctgcaactcaa |
266 |
Q |
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| T |
38379683 |
gattctcttggaactgttctgcttgatctgtaactcaa |
38379646 |
T |
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