View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15029_low_5 (Length: 488)

Name: NF15029_low_5
Description: NF15029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15029_low_5
NF15029_low_5
[»] chr4 (3 HSPs)
chr4 (14-471)||(31737293-31737747)
chr4 (379-452)||(13852294-13852367)
chr4 (314-356)||(55351269-55351311)
[»] chr7 (2 HSPs)
chr7 (351-471)||(12829264-12829388)
chr7 (279-356)||(44162403-44162480)
[»] chr6 (2 HSPs)
chr6 (358-468)||(8247137-8247247)
chr6 (419-455)||(14457238-14457274)
[»] chr5 (2 HSPs)
chr5 (352-449)||(29299614-29299711)
chr5 (315-352)||(10428279-10428316)
[»] chr1 (2 HSPs)
chr1 (303-356)||(40388157-40388210)
chr1 (355-471)||(40197903-40198019)
[»] scaffold0263 (1 HSPs)
scaffold0263 (314-356)||(8633-8675)
[»] chr2 (1 HSPs)
chr2 (282-356)||(33482996-33483070)
[»] chr3 (1 HSPs)
chr3 (303-356)||(49454579-49454632)


Alignment Details
Target: chr4 (Bit Score: 436; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 14 - 471
Target Start/End: Complemental strand, 31737747 - 31737293
Alignment:
Q  14 gcaaaggtcaagatctaaatggcctaaggaaggtgatgttaattctagattttttcataattgtataaaatcaagagggtcgagaaattctattaaggtc 113  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  31737747 gcaaaggtcaagatctaaatggcctaaggaaggtgatgttaattctagattttttcataattgtataaaatcaagagggtcgagaaattctattaaggcc 31737648  T
Q  114 ttaaaggtggatgatggttgggttactttgccttcggatgtgaggaaggccattgtggattttttcactaaccatgtggatgatattgcgtgggagaggc 213  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  31737647 ttaaaggtggatgatggttgggttactttgccttcggatgtgaggaaggccgttgtggattttttcactaaccatgtggatgatattgcgtgggagaggc 31737548  T
Q  214 ctaagttggatggagtgccgtttgagaggctttctttggaggaaaatgaggaattgattattaagcctttttcgttaatggagatagaagcggtggtgag 313  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||    
T  31737547 ctaagttggatggagtgccgtttgagaggctttctttggaggaaaatgaggaattg---attaagcctttttcgttaatggagatagaagcggtggtgag 31737451  T
Q  314 agatagtgacggtaataaaagtccgggtccggatggttttaatcaaggatgaggtgaggattttatttgatcaattccatgctaatgaggtaataccaaa 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31737450 agatagtgacggtaataaaagtccgggtccggatggttttaatcaaggatgaggtgaggattttatttgatcaattccatgctaatgaggtaataccaaa 31737351  T
Q  414 agggatgttagcttattttgttgctttgattccaaaagtttcatctccgatggctttg 471  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31737350 agggatgttagcttattttgttgctttgattccaaaagtttcatctccgatggctttg 31737293  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 379 - 452
Target Start/End: Original strand, 13852294 - 13852367
Alignment:
Q  379 tttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaagt 452  Q
    ||||||||||| ||||||||||||||  |||||||    ||||| || |||||||||||||| |||||||||||    
T  13852294 tttgatcaatttcatgctaatgaggtgctaccaaagtccatgttggcgtattttgttgctttaattccaaaagt 13852367  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 314 - 356
Target Start/End: Original strand, 55351269 - 55351311
Alignment:
Q  314 agatagtgacggtaataaaagtccgggtccggatggttttaat 356  Q
    ||||||||| ||||||||||| |||||||||||||| ||||||    
T  55351269 agatagtgatggtaataaaagcccgggtccggatggatttaat 55351311  T

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Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 351 - 471
Target Start/End: Complemental strand, 12829388 - 12829264
Alignment:
Q  351 tttaatcaaggatgaggtgaggattttat----ttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattcc 446  Q
    ||||||||||||||||||| ||||| |||    |||||||||| ||||  ||||||| ||| ||||||||  ||||||| ||||||||||||||||||||    
T  12829388 tttaatcaaggatgaggtgcggattatatatgtttgatcaatttcatgggaatgaggaaatcccaaaaggtttgttagcgtattttgttgctttgattcc 12829289  T
Q  447 aaaagtttcatctccgatggctttg 471  Q
      ||||||||||||| | |||||||    
T  12829288 ggaagtttcatctcctagggctttg 12829264  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 279 - 356
Target Start/End: Original strand, 44162403 - 44162480
Alignment:
Q  279 cctttttcgttaatggagatagaagcggtggtgagagatagtgacggtaataaaagtccgggtccggatggttttaat 356  Q
    |||||||| ||| |||| ||||| |||||||| | |||||| || ||  ||||||| ||||| |||||||||||||||    
T  44162403 cctttttccttattggaaatagaggcggtggttaaagatagcgatggggataaaagcccgggaccggatggttttaat 44162480  T

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Target: chr6 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 358 - 468
Target Start/End: Complemental strand, 8247247 - 8247137
Alignment:
Q  358 aaggatgaggtgaggattttatttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaagtttcat 457  Q
    ||||||||||||| |||||| || |||||||| |||||||||||| | ||| ||||||| ||||| |  ||||||||||| |||||  | ||||||||||    
T  8247247 aaggatgaggtgatgattttgttcgatcaatttcatgctaatgagattatatcaaaaggaatgttggtgtattttgttgcattgatatcgaaagtttcat 8247148  T
Q  458 ctccgatggct 468  Q
    |||| ||||||    
T  8247147 ctccaatggct 8247137  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 419 - 455
Target Start/End: Original strand, 14457238 - 14457274
Alignment:
Q  419 tgttagcttattttgttgctttgattccaaaagtttc 455  Q
    |||| ||||||||||| ||||||||||||||||||||    
T  14457238 tgttggcttattttgtggctttgattccaaaagtttc 14457274  T

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Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 352 - 449
Target Start/End: Original strand, 29299614 - 29299711
Alignment:
Q  352 ttaatcaaggatgaggtgaggattttatttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaa 449  Q
    ||||| |||||||||||||||||| | ||||||||||| ||||||||||||||  | |||| | |  | |||||||||||||| |||||||| |||||    
T  29299614 ttaatgaaggatgaggtgaggattatgtttgatcaattacatgctaatgaggtggtgccaagaagtttattagcttattttgtcgctttgatcccaaa 29299711  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 352
Target Start/End: Original strand, 10428279 - 10428316
Alignment:
Q  315 gatagtgacggtaataaaagtccgggtccggatggttt 352  Q
    |||||||||||  |||||||||||||||||||||||||    
T  10428279 gatagtgacggcgataaaagtccgggtccggatggttt 10428316  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 303 - 356
Target Start/End: Complemental strand, 40388210 - 40388157
Alignment:
Q  303 gcggtggtgagagatagtgacggtaataaaagtccgggtccggatggttttaat 356  Q
    |||||||| ||||||||||| ||||||||||||||| |||||||||||||||||    
T  40388210 gcggtggttagagatagtgatggtaataaaagtccgtgtccggatggttttaat 40388157  T

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Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 355 - 471
Target Start/End: Complemental strand, 40198019 - 40197903
Alignment:
Q  355 atcaaggatgaggtgaggattttatttgatcaattccatgctaatgaggtaataccaaaagggatgttagcttattttgttgctttgattccaaaagttt 454  Q
    ||||| ||||||||||| ||| | ||||| ||||| |||| |||||||||| | || |  |||||||| |||||||||||||| || ||||| |||||||    
T  40198019 atcaaagatgaggtgagaattatgtttgaccaatttcatggtaatgaggtatttccgagggggatgttggcttattttgttgcgttaattcctaaagttt 40197920  T
Q  455 catctccgatggctttg 471  Q
      || || |||||||||    
T  40197919 tgtcccctatggctttg 40197903  T

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Target: scaffold0263 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0263
Description:

Target: scaffold0263; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 314 - 356
Target Start/End: Complemental strand, 8675 - 8633
Alignment:
Q  314 agatagtgacggtaataaaagtccgggtccggatggttttaat 356  Q
    ||||||||| |||||||||||||||||||||||||||||||||    
T  8675 agatagtgatggtaataaaagtccgggtccggatggttttaat 8633  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 356
Target Start/End: Original strand, 33482996 - 33483070
Alignment:
Q  282 ttttcgttaatggagatagaagcggtggtgagagatagtgacggtaataaaagtccgggtccggatggttttaat 356  Q
    ||||||||| ||||||| || ||||||||||  || ||||||||  ||||||||||||| ||||| |||||||||    
T  33482996 ttttcgttattggagattgaggcggtggtgaaggagagtgacggggataaaagtccgggaccggacggttttaat 33483070  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 303 - 356
Target Start/End: Original strand, 49454579 - 49454632
Alignment:
Q  303 gcggtggtgagagatagtgacggtaataaaagtccgggtccggatggttttaat 356  Q
    |||||||||||||||||||| |||  |||||| ||||||||||||| |||||||    
T  49454579 gcggtggtgagagatagtgatggtggtaaaagcccgggtccggatgcttttaat 49454632  T

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