View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15029_low_8 (Length: 394)
Name: NF15029_low_8
Description: NF15029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15029_low_8 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 359; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 16 - 394
Target Start/End: Original strand, 32914973 - 32915351
Alignment:
| Q |
16 |
cacagaacagcccttaagcactgcctatacaattgatcctatgtactccatcactgcataccgaagcctcaaaaccatccagctagaactgtgcatctgt |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32914973 |
cacagaacagcccttaagcactgcctatacaattgatcctatgtacttcatcactgcataccgaagcctcaaaaccatccagctagaactgtgcatctgt |
32915072 |
T |
|
| Q |
116 |
aatatgcgctcctaaaaactcacagccggtacacaagcccaaaagcaccgccagttacttcacgtgagaagaaaatctcgacagactcaccagtactgtc |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32915073 |
aatatgcgctcctaaaaactcacagccggtacacaagcccaaaagcaccgccagttacttcacgtgagaagaaaatctcgacagactcaccagtactgtc |
32915172 |
T |
|
| Q |
216 |
actacaccccaattagctacttcctcgatagacattcttgaggattccaattcccttcataaaataaacatgtttgtatattcagcctacacaaactcca |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
32915173 |
actacaccccaattagctacttcctcgatagacattcttgaggattccaattccattcataaaataaacatgcttgtatattcagcctacacaaactcca |
32915272 |
T |
|
| Q |
316 |
ccgccatgaattaaccacaatttccgccaaaagatcatccacatgtttcacatcgttacgaaaaatcaaatgattcctc |
394 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||| |
|
|
| T |
32915273 |
ccgccatgaattaaccacaatttccgccaaaagatcatccacatgtttcacctcattacgaaaaatcaaatgattcctc |
32915351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 233 - 393
Target Start/End: Original strand, 9359281 - 9359441
Alignment:
| Q |
233 |
tacttcctcgatagacattcttgaggattccaattcccttcataaaataaacatgtttgtatattcagcctacacaaactccaccgccatgaattaacca |
332 |
Q |
| |
|
|||||||| ||||||||||||| ||||||||||||| ||||||| |||| |||||||| |||| |||||| |||||||||||||||| |||||||| | |
|
|
| T |
9359281 |
tacttccttaatagacattcttgtggattccaattccattcataatataagcatgtttgcatatcaagcctatacaaactccaccgccacgaattaacaa |
9359380 |
T |
|
| Q |
333 |
caatttccgccaaaagatcatccacatgtttcacatcgttacgaaaaatcaaatgattcct |
393 |
Q |
| |
|
|||| |||| |||||||||||||||||| ||||| || || || || |||| ||||||||| |
|
|
| T |
9359381 |
caatctccgacaaaagatcatccacatgcttcacctcatttcggaagatcatatgattcct |
9359441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 232 - 394
Target Start/End: Complemental strand, 2308361 - 2308199
Alignment:
| Q |
232 |
ctacttcctcgatagacattcttgaggattccaattcccttcataaaataaacatgtttgtatattcagcctacacaaactccaccgccatgaattaacc |
331 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||| ||| ||| ||||| ||||| || ||| |||||||||||| ||||||||| ||| |
|
|
| T |
2308361 |
ctacttcctcgttagacattcttgaggattccaattccattcataatatagacaggtttgcatattaagtctagacaaactccacctccatgaatttacc |
2308262 |
T |
|
| Q |
332 |
acaatttccgccaaaagatcatccacatgtttcacatcgttacgaaaaatcaaatgattcctc |
394 |
Q |
| |
|
||||| |||||||||| ||| ||||||||| | || || ||| | |||||| |||| |||||| |
|
|
| T |
2308261 |
acaatctccgccaaaatatcttccacatgtattacctcattaaggaaaatcgaatggttcctc |
2308199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 232 - 321
Target Start/End: Complemental strand, 43805617 - 43805528
Alignment:
| Q |
232 |
ctacttcctcgatagacattcttgaggattccaattcccttcataaaataaacatgtttgtatattcagcctacacaaactccaccgcca |
321 |
Q |
| |
|
|||||||||| | || || ||||||||||||||| | | ||||||| ||||||| ||||| ||||| |||||| |||||||||||||||| |
|
|
| T |
43805617 |
ctacttcctcaaaaggcactcttgaggattccaacttcattcataatataaacaagtttgcatattaagcctatacaaactccaccgcca |
43805528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University