View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15029_low_9 (Length: 358)
Name: NF15029_low_9
Description: NF15029
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15029_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 147; Significance: 2e-77; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 18 - 186
Target Start/End: Original strand, 38838642 - 38838807
Alignment:
| Q |
18 |
taaatgtcattgttggagtgcttacgttataattttttataatgatttgcttctacttgcttggctagtagttctctagcttgttctatttgtatatact |
117 |
Q |
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| T |
38838642 |
taaatgtcattgttggagtgtttacgttataattttttataatgatttgcttctacttgcttggctagt---tctctagcttgttctatttgtatatact |
38838738 |
T |
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| Q |
118 |
tttttattcctcataggatctccttgtgcttattagggaggttttaatctattttgcttttgacctgat |
186 |
Q |
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| T |
38838739 |
tttttattactcataggatctccttgtgcttattagggaggttttaatctattttgcttttgacctgat |
38838807 |
T |
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Target: chr2; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 213 - 348
Target Start/End: Original strand, 38838833 - 38838973
Alignment:
| Q |
213 |
tatgctttatgtaatgttttattctccaaccgttacctcaatattattaccaaagtaagtaaatgcttcttgcttctttctttggtacttctttta---- |
308 |
Q |
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| T |
38838833 |
tatgctttatgtaatgttttattctccaaccgttacctcaa---tattacca----aagtaaatgcttcttgcttctttctttggtacttcttttatttt |
38838925 |
T |
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| Q |
309 |
--------ataaagcttgtagtagtacttcttatattttacctttcat |
348 |
Q |
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| T |
38838926 |
atttttttataaagcttgtagtagtacttcttatattttacctttcat |
38838973 |
T |
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