View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1502_high_7 (Length: 240)

Name: NF1502_high_7
Description: NF1502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1502_high_7
NF1502_high_7
[»] chr8 (19 HSPs)
chr8 (134-240)||(6453295-6453401)
chr8 (134-240)||(12022170-12022276)
chr8 (134-240)||(8815168-8815274)
chr8 (134-240)||(16024265-16024370)
chr8 (134-240)||(30365241-30365347)
chr8 (134-240)||(43732798-43732904)
chr8 (135-217)||(29937614-29937696)
chr8 (134-240)||(34196420-34196524)
chr8 (138-209)||(40633047-40633118)
chr8 (163-217)||(8671842-8671896)
chr8 (134-231)||(20472728-20472825)
chr8 (134-205)||(9434360-9434432)
chr8 (138-232)||(9933356-9933450)
chr8 (134-238)||(24243078-24243180)
chr8 (22-71)||(6453183-6453232)
chr8 (134-191)||(43826443-43826500)
chr8 (196-240)||(30581986-30582030)
chr8 (134-233)||(39449415-39449514)
chr8 (179-240)||(31543099-31543160)
[»] chr5 (19 HSPs)
chr5 (134-240)||(34980921-34981027)
chr5 (134-235)||(10043363-10043464)
chr5 (134-240)||(10204687-10204793)
chr5 (152-236)||(33744224-33744308)
chr5 (135-240)||(12035963-12036067)
chr5 (157-240)||(15986651-15986734)
chr5 (137-217)||(6597840-6597920)
chr5 (134-233)||(40305699-40305798)
chr5 (152-223)||(6382456-6382527)
chr5 (150-216)||(2183941-2184007)
chr5 (152-240)||(14245115-14245203)
chr5 (177-240)||(1657967-1658030)
chr5 (152-210)||(21581076-21581134)
chr5 (135-207)||(8551478-8551550)
chr5 (135-228)||(10043048-10043141)
chr5 (135-208)||(33424861-33424934)
chr5 (152-240)||(13634840-13634928)
chr5 (196-240)||(14245219-14245263)
chr5 (173-217)||(36363182-36363226)
[»] chr4 (25 HSPs)
chr4 (134-230)||(22186830-22186926)
chr4 (134-240)||(37761575-37761681)
chr4 (134-240)||(54576354-54576460)
chr4 (134-235)||(4437457-4437558)
chr4 (134-238)||(34995162-34995264)
chr4 (154-240)||(29993798-29993884)
chr4 (134-228)||(55080690-55080784)
chr4 (134-231)||(43961521-43961618)
chr4 (134-210)||(51329906-51329982)
chr4 (134-240)||(7977522-7977629)
chr4 (134-217)||(47846105-47846188)
chr4 (152-226)||(5825025-5825099)
chr4 (135-203)||(9030328-9030396)
chr4 (134-240)||(21694917-21695022)
chr4 (134-210)||(54001163-54001236)
chr4 (134-215)||(11089627-11089708)
chr4 (177-240)||(6938401-6938464)
chr4 (134-232)||(17182518-17182618)
chr4 (134-206)||(14539383-14539455)
chr4 (152-196)||(51075226-51075270)
chr4 (134-216)||(2247854-2247936)
chr4 (162-216)||(35543358-35543412)
chr4 (134-232)||(44145842-44145940)
chr4 (134-210)||(34108283-34108359)
chr4 (196-240)||(6938308-6938352)
[»] chr7 (27 HSPs)
chr7 (134-240)||(28074130-28074236)
chr7 (134-240)||(36267580-36267686)
chr7 (134-240)||(33519159-33519265)
chr7 (134-240)||(48881585-48881691)
chr7 (134-238)||(37620885-37620989)
chr7 (146-240)||(2087766-2087860)
chr7 (154-238)||(37925972-37926056)
chr7 (134-240)||(30592280-30592386)
chr7 (154-232)||(39646600-39646678)
chr7 (134-217)||(35422075-35422158)
chr7 (166-240)||(31364072-31364146)
chr7 (152-232)||(21857476-21857555)
chr7 (139-240)||(48015323-48015424)
chr7 (152-232)||(48013632-48013712)
chr7 (134-193)||(3215934-3215993)
chr7 (134-240)||(16833806-16833915)
chr7 (135-232)||(48094005-48094102)
chr7 (139-194)||(8122264-8122319)
chr7 (150-217)||(19835836-19835903)
chr7 (134-228)||(23116298-23116393)
chr7 (134-240)||(18231697-18231803)
chr7 (135-240)||(4833558-4833663)
chr7 (135-192)||(7791831-7791888)
chr7 (167-228)||(12670572-12670633)
chr7 (162-210)||(3143623-3143671)
chr7 (196-240)||(39856038-39856082)
chr7 (196-240)||(41008209-41008253)
[»] chr1 (18 HSPs)
chr1 (135-240)||(35512909-35513014)
chr1 (134-240)||(40709319-40709425)
chr1 (134-232)||(1085524-1085623)
chr1 (134-240)||(25268375-25268481)
chr1 (152-217)||(47071180-47071245)
chr1 (134-240)||(35927924-35928029)
chr1 (134-237)||(2506650-2506753)
chr1 (134-232)||(525137-525232)
chr1 (134-215)||(33643379-33643460)
chr1 (152-216)||(1344677-1344741)
chr1 (137-217)||(13386969-13387049)
chr1 (134-180)||(17622648-17622694)
chr1 (134-240)||(51303411-51303517)
chr1 (134-210)||(40287313-40287388)
chr1 (163-240)||(20607356-20607434)
chr1 (134-235)||(41498515-41498616)
chr1 (196-240)||(30010359-30010403)
chr1 (196-240)||(35349635-35349679)
[»] chr3 (21 HSPs)
chr3 (134-240)||(34641103-34641207)
chr3 (134-240)||(24253833-24253939)
chr3 (134-240)||(26135908-26136014)
chr3 (134-240)||(8432288-8432392)
chr3 (134-216)||(10943665-10943747)
chr3 (134-240)||(44412472-44412578)
chr3 (136-240)||(55428492-55428596)
chr3 (134-216)||(40858676-40858758)
chr3 (134-205)||(42772143-42772214)
chr3 (134-210)||(41414189-41414265)
chr3 (152-216)||(54985744-54985808)
chr3 (134-217)||(17474256-17474339)
chr3 (134-209)||(21090129-21090204)
chr3 (152-217)||(18086030-18086095)
chr3 (157-216)||(48683747-48683806)
chr3 (134-211)||(42699668-42699745)
chr3 (134-190)||(46978538-46978594)
chr3 (134-209)||(36727287-36727362)
chr3 (196-240)||(24560244-24560288)
chr3 (184-232)||(25179929-25179977)
chr3 (196-240)||(28582682-28582726)
[»] scaffold0007 (1 HSPs)
scaffold0007 (138-240)||(242331-242433)
[»] chr6 (16 HSPs)
chr6 (134-240)||(26318416-26318522)
chr6 (152-210)||(9051591-9051649)
chr6 (134-236)||(10293359-10293461)
chr6 (134-217)||(31799032-31799115)
chr6 (138-240)||(34176598-34176700)
chr6 (137-204)||(15323339-15323406)
chr6 (137-204)||(15353477-15353544)
chr6 (134-223)||(3841196-3841286)
chr6 (134-217)||(25468449-25468532)
chr6 (137-194)||(15373672-15373729)
chr6 (134-210)||(4097292-4097368)
chr6 (186-240)||(23091121-23091176)
chr6 (134-240)||(10818327-10818433)
chr6 (134-233)||(30849948-30850045)
chr6 (196-240)||(9719058-9719102)
chr6 (196-240)||(14515500-14515544)
[»] chr2 (21 HSPs)
chr2 (138-240)||(42296330-42296432)
chr2 (135-240)||(42813732-42813837)
chr2 (134-238)||(45257418-45257522)
chr2 (134-220)||(35325380-35325466)
chr2 (155-237)||(16713657-16713739)
chr2 (134-210)||(3094410-3094486)
chr2 (134-210)||(15085757-15085833)
chr2 (152-217)||(9313116-9313181)
chr2 (141-205)||(34187695-34187759)
chr2 (154-240)||(22356134-22356221)
chr2 (138-240)||(31061474-31061577)
chr2 (157-232)||(36052122-36052197)
chr2 (152-210)||(1052812-1052870)
chr2 (134-230)||(33265717-33265813)
chr2 (134-209)||(45098280-45098355)
chr2 (134-216)||(21502144-21502226)
chr2 (134-190)||(31928121-31928177)
chr2 (134-236)||(31795800-31795902)
chr2 (179-240)||(887266-887327)
chr2 (152-215)||(8554351-8554414)
chr2 (154-196)||(2381058-2381100)
[»] scaffold0240 (1 HSPs)
scaffold0240 (134-217)||(17651-17734)
[»] scaffold0026 (1 HSPs)
scaffold0026 (135-226)||(1438-1529)
[»] scaffold0119 (1 HSPs)
scaffold0119 (134-220)||(37494-37580)
[»] scaffold0012 (1 HSPs)
scaffold0012 (134-240)||(184718-184824)
[»] scaffold0071 (1 HSPs)
scaffold0071 (138-217)||(53000-53079)
[»] scaffold0095 (1 HSPs)
scaffold0095 (134-233)||(8258-8357)
[»] scaffold1414 (1 HSPs)
scaffold1414 (134-210)||(412-489)


Alignment Details
Target: chr8 (Bit Score: 83; Significance: 2e-39; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 134 - 240
Target Start/End: Original strand, 6453295 - 6453401
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    |||||||||||||||||||||||||||||||| ||    
T  6453295 gaagtattatatgattacttatcatgttattaattcaattttctaaaaatcattttataatgattgtaatttaaaaaggaaaagcaagtcctccccttcc 6453394  T
Q  234 ttcccct 240  Q
    |||||||    
T  6453395 ttcccct 6453401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 12022276 - 12022170
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    |||||||||||| || | |||||||||| |||||||||||||||||||||||||||||||| | ||||||||||||| |||||| ||| |||||||||||    
T  12022276 gaagtattatatgatcatttatcatgttgttaattcaattttctaaaaatcattttataatgttcgtaatttaaaaaagaaaagtaagccctcccctccc 12022177  T
Q  234 ttcccct 240  Q
    |||||||    
T  12022176 ttcccct 12022170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 8815274 - 8815168
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    ||||||||||||||| | |||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||||| || |||| |    
T  8815274 gaagtattatataatcatttatcatgttgttgattcaattttctaaaaatcattttataatgtccgtaatttaaaaaagaaaagtaagtcatcacctctc 8815175  T
Q  234 ttcccct 240  Q
    |||||||    
T  8815174 ttcccct 8815168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 134 - 240
Target Start/End: Original strand, 16024265 - 16024370
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    |||||||||||| || | |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||| ||   ||||||||||    
T  16024265 gaagtattatatgatcatttatcatgttgttaattcaattttctaaaaatcattttataatgtccgtaatttaaaaa-gaaaagtaaactctcccctccc 16024363  T
Q  234 ttcccct 240  Q
    |||||||    
T  16024364 ttcccct 16024370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 134 - 240
Target Start/End: Original strand, 30365241 - 30365347
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    ||||| ||||||||| | |||||||||| |||||||||||||||||||||||||| ||||| || |||||||||||| |||||| ||| |||||||||||    
T  30365241 gaagtgttatataatcatttatcatgttgttaattcaattttctaaaaatcatttcataatgtctgtaatttaaaaaagaaaaggaagccctcccctccc 30365340  T
Q  234 ttcccct 240  Q
    || ||||    
T  30365341 ttaccct 30365347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 134 - 240
Target Start/End: Original strand, 43732798 - 43732904
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    |||||||||||| || | ||||||| || |||||||||||||| ||||||||||||||||| ||||||||||||||| |||||| ||  |||||||||||    
T  43732798 gaagtattatatgatcatttatcatattgttaattcaattttcaaaaaatcattttataatgtccgtaatttaaaaaagaaaagtaaaccctcccctccc 43732897  T
Q  234 ttcccct 240  Q
    |||||||    
T  43732898 ttcccct 43732904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 135 - 217
Target Start/End: Original strand, 29937614 - 29937696
Alignment:
Q  135 aagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaag 217  Q
    ||||||||||| || | |||||||||| |||||||||||||||||||||||||||||||| ||| |||||| |||| ||||||    
T  29937614 aagtattatatgatcatttatcatgttgttaattcaattttctaaaaatcattttataatgtccataattttaaaaagaaaag 29937696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 134 - 240
Target Start/End: Original strand, 34196420 - 34196524
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    |||||||||||| ||   ||||| |||| |||||||||||||||||||||||||||||||| || |||||||||||| |||||| ||| ||||||| |||    
T  34196420 gaagtattatatgatcgtttatcttgttgttaattcaattttctaaaaatcattttataatgtctgtaatttaaaaa-gaaaagtaagccctcccc-ccc 34196517  T
Q  234 ttcccct 240  Q
    |||||||    
T  34196518 ttcccct 34196524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 138 - 209
Target Start/End: Complemental strand, 40633118 - 40633047
Alignment:
Q  138 tattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaa 209  Q
    ||||||| ||| | |||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||    
T  40633118 tattatacaatcatttatcatgttgttaattcaattttctaaaaattattttataatgtccgtaatttaaaa 40633047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 163 - 217
Target Start/End: Complemental strand, 8671896 - 8671842
Alignment:
Q  163 ttaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaag 217  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  8671896 ttaattcaattttctaaaaatcattttataatgtccgtaatttaaaaagaaaaag 8671842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 134 - 231
Target Start/End: Complemental strand, 20472825 - 20472728
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctc 231  Q
    |||||||||||| || |  |||||| || ||||||||||||||||||| | |||||||||| || |||||||||||| |||||| ||| ||| |||||    
T  20472825 gaagtattatatgatcatatatcatattgttaattcaattttctaaaatttattttataatgtctgtaatttaaaaaagaaaagtaagcccttccctc 20472728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 205
Target Start/End: Complemental strand, 9434432 - 9434360
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatca-ttttataatatccgtaattt 205  Q
    |||||||||||| || | |||||||||| ||||||||||||| ||||||| | ||||||||||||||||||||    
T  9434432 gaagtattatattatcatttatcatgttgttaattcaattttttaaaaattatttttataatatccgtaattt 9434360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 138 - 232
Target Start/End: Original strand, 9933356 - 9933450
Alignment:
Q  138 tattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctcc 232  Q
    |||||||| || | |||||||||| ||||||||||||| | |||||||||||||||| |||  | |||||||| |||||| ||  ||||||||||    
T  9933356 tattatatgatcatttatcatgttgttaattcaatttttttaaaatcattttataatgtccaaattttaaaaaagaaaagtaaaccctcccctcc 9933450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 238
Target Start/End: Complemental strand, 24243180 - 24243078
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    |||||||||||| || | |||||||||||||| ||||||||| |||||  ||||||||| | | |||||||| |||| |||||| ||||| |||| ||||    
T  24243180 gaagtattatatgatcatttatcatgttattatttcaatttt-taaaagacattttatagtgt-cgtaatttcaaaatgaaaagtaagtcatcccttccc 24243083  T
Q  234 ttccc 238  Q
    |||||    
T  24243082 ttccc 24243078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 22 - 71
Target Start/End: Original strand, 6453183 - 6453232
Alignment:
Q  22 acgtgtatttgaattgaggatttgggaggaaaaaggaggggaagactcac 71  Q
    ||||||||||| ||||||| |||||||| |||| ||||||||||||||||    
T  6453183 acgtgtatttggattgagggtttgggagaaaaagggaggggaagactcac 6453232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 191
Target Start/End: Original strand, 43826443 - 43826500
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttat 191  Q
    |||||||| ||| || | |||||||||| ||||||||||||||||||||| |||||||    
T  43826443 gaagtattttatgatcatttatcatgttgttaattcaattttctaaaaattattttat 43826500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 30581986 - 30582030
Alignment:
Q  196 tccgtaatttaaaaaggaaaagcaagtcctcccctcccttcccct 240  Q
    ||||||||||||||| |||||| ||| ||||||||||||||||||    
T  30581986 tccgtaatttaaaaaagaaaagtaagccctcccctcccttcccct 30582030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 233
Target Start/End: Original strand, 39449415 - 39449514
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    |||||||||||| || | | |||||||| ||||||||||||| ||||||| |||||||||  ||  ||| ||||||| | || | ||| |||||||||||    
T  39449415 gaagtattatatgatcattaatcatgttgttaattcaattttttaaaaataattttataacgtctttaaattaaaaaaggaatgtaagccctcccctccc 39449514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 179 - 240
Target Start/End: Complemental strand, 31543160 - 31543099
Alignment:
Q  179 aaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctcccttcccct 240  Q
    |||| ||||| ||| | ||||||||||||||| |||||| ||  ||||||||||||||||||    
T  31543160 aaaaacatttcatagtttccgtaatttaaaaatgaaaagtaaaccctcccctcccttcccct 31543099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 71; Significance: 3e-32; HSPs: 19)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 134 - 240
Target Start/End: Original strand, 34980921 - 34981027
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    ||||||||||||||| | |||||||||| |||| ||||||||||| ||||||||||||||| ||| ||||||||||| |||||| |||||||||||||||    
T  34980921 gaagtattatataatcatttatcatgttgttaactcaattttctataaatcattttataatgtccataatttaaaaaagaaaagtaagtcctcccctccc 34981020  T
Q  234 ttcccct 240  Q
    |||||||    
T  34981021 ttcccct 34981027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 134 - 235
Target Start/End: Original strand, 10043363 - 10043464
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    |||||||||||| |||| |||| ||||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||  ||||||||||||||    
T  10043363 gaagtattatatgattatttataatgttgttaattcaattttctaaaaatcattttataatattcgtaatttaaaaaagaaaagtgagtcctcccctccc 10043462  T
Q  234 tt 235  Q
    ||    
T  10043463 tt 10043464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 134 - 240
Target Start/End: Original strand, 10204687 - 10204793
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    |||||||||||| || | |||| | ||| ||||||||||||| ||||||||||||| |||| || |||| ||||||| |||||| |||||||||||||||    
T  10204687 gaagtattatatgatcatttattacgttgttaattcaattttttaaaaatcattttttaatgtctgtaaattaaaaaagaaaagtaagtcctcccctccc 10204786  T
Q  234 ttcccct 240  Q
    |||||||    
T  10204787 ttcccct 10204793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 152 - 236
Target Start/End: Complemental strand, 33744308 - 33744224
Alignment:
Q  152 ttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctcccttc 236  Q
    |||||||||| |||||||||||||| ||||||||||||||||| ||| ||||||||||| |||||| ||  ||||||||||||||    
T  33744308 ttatcatgttgttaattcaattttcaaaaaatcattttataatgtccataatttaaaaaagaaaagtaaaccctcccctcccttc 33744224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 135 - 240
Target Start/End: Complemental strand, 12036067 - 12035963
Alignment:
Q  135 aagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccct 234  Q
    ||||||||||| || | |||||||||| | ||||||||||||||| ||| |||||||||| | | ||||||||||| ||||| |||||||||| ||||||    
T  12036067 aagtattatatgataatttatcatgttgt-aattcaattttctaataataattttataatgttcataatttaaaaaagaaaaacaagtcctcctctccct 12035969  T
Q  235 tcccct 240  Q
    ||||||    
T  12035968 tcccct 12035963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 157 - 240
Target Start/End: Complemental strand, 15986734 - 15986651
Alignment:
Q  157 atgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctcccttcccct 240  Q
    ||||| ||||||||||||| ||||| |||||||||||| || |||| ||||||| |||||  ||||||||||||||||||||||    
T  15986734 atgttgttaattcaattttttaaaagtcattttataatgtctgtaaattaaaaaagaaaattaagtcctcccctcccttcccct 15986651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 137 - 217
Target Start/End: Complemental strand, 6597920 - 6597840
Alignment:
Q  137 gtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaag 217  Q
    ||||||||| || | |||||||||| ||| |||||||||| ||||||||||||| ||| ||||||||||||||| ||||||    
T  6597920 gtattatatgatcatttatcatgttgttatttcaattttcaaaaaatcattttacaatgtccgtaatttaaaaaagaaaag 6597840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 233
Target Start/End: Complemental strand, 40305798 - 40305699
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    |||||| ||||| || | ||||||| || ||||||||||||||||||||| |||||||||| || |||||||||||| |||||  ||| |||||| ||||    
T  40305798 gaagtactatatgatcatttatcatattgttaattcaattttctaaaaattattttataatgtctgtaatttaaaaaagaaaactaagccctcccttccc 40305699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 152 - 223
Target Start/End: Original strand, 6382456 - 6382527
Alignment:
Q  152 ttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtc 223  Q
    |||||||||| ||||||||||||||||||||  |||||||||| ||||||| ||| ||| |||||| |||||    
T  6382456 ttatcatgttgttaattcaattttctaaaaagtattttataatgtccgtaaattagaaaagaaaagtaagtc 6382527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 150 - 216
Target Start/End: Original strand, 2183941 - 2184007
Alignment:
Q  150 acttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaa 216  Q
    |||||||||||| ||| ||||||||| |||| | ||||||||||| ||||||||||||| |||||||    
T  2183941 acttatcatgttgttatttcaattttttaaataacattttataatgtccgtaatttaaagaggaaaa 2184007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 152 - 240
Target Start/End: Complemental strand, 14245203 - 14245115
Alignment:
Q  152 ttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctcccttcccct 240  Q
    ||||||||||| ||  | || |||||||||| ||||| | | | ||||||||||||||| |||||| || |||||||||||||||||||    
T  14245203 ttatcatgttaatatgttaactttctaaaaaacatttcacagtgtccgtaatttaaaaaagaaaagtaaatcctcccctcccttcccct 14245115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 1657967 - 1658030
Alignment:
Q  177 taaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctcccttcccct 240  Q
    |||||| ||||||||| | ||||||||||||||| |||||| ||  ||||||||||||||||||    
T  1657967 taaaaaacattttatagtgtccgtaatttaaaaatgaaaagtaaaccctcccctcccttcccct 1658030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 152 - 210
Target Start/End: Original strand, 21581076 - 21581134
Alignment:
Q  152 ttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaa 210  Q
    |||||||||| ||||||||||||||||||||| |||| ||||  ||| |||||||||||    
T  21581076 ttatcatgttgttaattcaattttctaaaaattatttcataacgtccataatttaaaaa 21581134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 8551550 - 8551478
Alignment:
Q  135 aagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaa 207  Q
    ||||||||||| || | |||| ||||| |||||| |||||| |||||||||||||||||| || ||| |||||    
T  8551550 aagtattatatgatcatttataatgttgttaatttaattttttaaaaatcattttataatgtctgtagtttaa 8551478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 10043141 - 10043048
Alignment:
Q  135 aagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctccc 228  Q
    ||||||||||| || | |||||||||| |||||||||||||||| |||| ||| | |||| |   |||||||| || |||||| ||||| ||||    
T  10043141 aagtattatatgatcatttatcatgttgttaattcaattttctagaaataattctttaatgtttataatttaagaaagaaaagtaagtcatccc 10043048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 208
Target Start/End: Complemental strand, 33424934 - 33424861
Alignment:
Q  135 aagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaa 208  Q
    ||||||||||| || | |||||||  ||||| ||||||||  | |||| ||||||||| |||||||||||||||    
T  33424934 aagtattatatgatcatttatcattctattatttcaatttagtgaaaagcattttatactatccgtaatttaaa 33424861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 152 - 240
Target Start/End: Original strand, 13634840 - 13634928
Alignment:
Q  152 ttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctcccttcccct 240  Q
    ||||||||||| ||  | || ||| |||||| ||||| ||| | | ||||||||||||| |||||| ||  ||||||||||||||||||    
T  13634840 ttatcatgttaatatgttaactttttaaaaaacatttcatagtgttcgtaatttaaaaatgaaaagtaacccctcccctcccttcccct 13634928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 14245219 - 14245263
Alignment:
Q  196 tccgtaatttaaaaaggaaaagcaagtcctcccctcccttcccct 240  Q
    ||||||||||||||| ||||| |||  ||||||||||||||||||    
T  14245219 tccgtaatttaaaaatgaaaaacaaaccctcccctcccttcccct 14245263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 217
Target Start/End: Original strand, 36363182 - 36363226
Alignment:
Q  173 tttctaaaaatcattttataatatccgtaatttaaaaaggaaaag 217  Q
    |||||||||  ||||||||| ||||||||||||||||| ||||||    
T  36363182 tttctaaaagacattttatagtatccgtaatttaaaaatgaaaag 36363226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 22186830 - 22186926
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccct 230  Q
    ||||||||||||||| | |||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||  |||||||||||    
T  22186830 gaagtattatataatcatttatcatgttgttaattcaattttctaaaaatcattttataatgtccgtaatttaaaaaagaaaagtgagtcctcccct 22186926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 134 - 240
Target Start/End: Original strand, 37761575 - 37761681
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    ||||| ||||||||| | |||||||||| |||||||||||||||||||||||||| ||||| ||| ||||||||||| |||||| ||| |||||||||||    
T  37761575 gaagtgttatataatcatttatcatgttgttaattcaattttctaaaaatcatttcataatgtccataatttaaaaaagaaaaggaagccctcccctccc 37761674  T
Q  234 ttcccct 240  Q
    |||||||    
T  37761675 ttcccct 37761681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 54576460 - 54576354
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    ||||||||||||||| | |||||| ||| |||||||||||||||| ||||||||||||||| |||||||| |||||| |||||| ||| |||||||||||    
T  54576460 gaagtattatataatcatttatcacgttgttaattcaattttctataaatcattttataatgtccgtaatctaaaaaagaaaagtaagccctcccctccc 54576361  T
Q  234 ttcccct 240  Q
    |||||||    
T  54576360 ttcccct 54576354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 134 - 235
Target Start/End: Complemental strand, 4437558 - 4437457
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    |||||||||||| || | |||||||||| ||||||||||||| |||||||||||||||||||||| ||||||||||| |||||  ||||| |||||||||    
T  4437558 gaagtattatatgatcaattatcatgttgttaattcaattttttaaaaatcattttataatatccataatttaaaaaagaaaaataagtcatcccctccc 4437459  T
Q  234 tt 235  Q
    ||    
T  4437458 tt 4437457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 34995162 - 34995264
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    |||||||||||  |||| ||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||| | ||||| |    
T  34995162 gaagtattataagattatttatcatgtt--taattcaattttctaaaaatcatttgataatatccgtaatttaaaaaagaaaagtaagtcttaccctcac 34995259  T
Q  234 ttccc 238  Q
    |||||    
T  34995260 ttccc 34995264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 154 - 240
Target Start/End: Complemental strand, 29993884 - 29993798
Alignment:
Q  154 atcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctcccttcccct 240  Q
    |||||||| |||||||||||||||||||||||||||||| | ||||||||||||||| ||||| | |||||||| ||| ||||||||    
T  29993884 atcatgttgttaattcaattttctaaaaatcattttatagtgtccgtaatttaaaaaagaaaaacgagtcctccactcacttcccct 29993798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 134 - 228
Target Start/End: Original strand, 55080690 - 55080784
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctccc 228  Q
    |||||||| ||| || | |||||||||| |||||| |||||||||||||| |||||||||| | ||||||||||||| |||||| ||||||||||    
T  55080690 gaagtattttatgatcatttatcatgttgttaattaaattttctaaaaattattttataatgttcgtaatttaaaaaagaaaagtaagtcctccc 55080784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 134 - 231
Target Start/End: Original strand, 43961521 - 43961618
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctc 231  Q
    |||||||||||| || | ||||||||||  ||||||||||||||||||||||||||||||| | | ||||||||||| |||||  ||| |||||||||    
T  43961521 gaagtattatatgatcatttatcatgttgataattcaattttctaaaaatcattttataatgttcataatttaaaaaagaaaaataagccctcccctc 43961618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 51329906 - 51329982
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaa 210  Q
    ||||||||||||||| | ||||||| || |||||||||||||||| |||| |||||||||||||| |||||||||||    
T  51329906 gaagtattatataatcatttatcattttgttaattcaattttctataaattattttataatatccctaatttaaaaa 51329982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 7977629 - 7977522
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaattta-aaaaggaaaagcaagtcctcccctcc 232  Q
    |||||||||||| || | |||||||||| |||||||||||||| ||| || |||||||||| | ||||||||| |||| |||||| ||| ||||||||||    
T  7977629 gaagtattatatgatcatttatcatgttgttaattcaattttcaaaatattattttataatgttcgtaatttaaaaaaagaaaagtaagccctcccctcc 7977530  T
Q  233 cttcccct 240  Q
    ||| ||||    
T  7977529 ctttccct 7977522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 134 - 217
Target Start/End: Complemental strand, 47846188 - 47846105
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaag 217  Q
    |||||||||||| |||| |||||||||| ||||||||||||| ||||||| |||||||||| |||  |||||||||| ||||||    
T  47846188 gaagtattatatgattatttatcatgttcttaattcaattttgtaaaaattattttataatgtccagaatttaaaaaagaaaag 47846105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 152 - 226
Target Start/End: Original strand, 5825025 - 5825099
Alignment:
Q  152 ttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctc 226  Q
    |||||||||| |||||||||||||||||||||||||||||||| || |||||| ||||| |||||| || |||||    
T  5825025 ttatcatgttgttaattcaattttctaaaaatcattttataatgtctgtaattcaaaaaagaaaagtaaatcctc 5825099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 9030328 - 9030396
Alignment:
Q  135 aagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaat 203  Q
    |||||||||||||| | ||||||| ||||||||| ||||||||||||||||||||||||| || |||||    
T  9030328 aagtattatataatcatttatcattttattaattaaattttctaaaaatcattttataatgtctgtaat 9030396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 21695022 - 21694917
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    |||||||||||| || | ||||||| || ||| ||||||||  |||||| ||||||||| | ||||||||||||||| |||||| ||| |||||| ||||    
T  21695022 gaagtattatatgatca-ttatcattttgttatttcaatttattaaaaaccattttatagtgtccgtaatttaaaaaagaaaagtaagccctcccgtccc 21694924  T
Q  234 ttcccct 240  Q
    |||||||    
T  21694923 ttcccct 21694917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 54001236 - 54001163
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaa 210  Q
    |||||||||||| || | |||||||||||   |||||||||| ||||||| |||||||||| |||||||||||||||    
T  54001236 gaagtattatatgatcatttatcatgtta---attcaattttttaaaaattattttataatgtccgtaatttaaaaa 54001163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 215
Target Start/End: Original strand, 11089627 - 11089708
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaa 215  Q
    |||||| ||||| || | |||| ||||| ||||||||||||||||||||  |||||||||  ||||||||||||||| ||||    
T  11089627 gaagtaatatatgatcatttatgatgttgttaattcaattttctaaaaaatattttataaagtccgtaatttaaaaaagaaa 11089708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 177 - 240
Target Start/End: Original strand, 6938401 - 6938464
Alignment:
Q  177 taaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctcccttcccct 240  Q
    |||||| ||||||||||||||||||||||||||| ||||||  |  |||||||||| |||||||    
T  6938401 taaaaaacattttataatatccgtaatttaaaaatgaaaagtgaaccctcccctccattcccct 6938464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 134 - 232
Target Start/End: Complemental strand, 17182618 - 17182518
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaatttt--ctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctc 231  Q
    |||||||||||| || | ||||||| || |||||||||||||  | ||||||||||||||||  ||  ||||||||||| |||||| || || |||||||    
T  17182618 gaagtattatatgatcatttatcatattgttaattcaatttttgcaaaaaatcattttataacgtcaataatttaaaaaagaaaagtaaatcttcccctc 17182519  T
Q  232 c 232  Q
    |    
T  17182518 c 17182518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 206
Target Start/End: Original strand, 14539383 - 14539455
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaattta 206  Q
    |||||||||||| || | |||| ||||| |||||| |||||||||| || ||||||||||| | |||||||||    
T  14539383 gaagtattatatgatcatttattatgttcttaatttaattttctaacaaacattttataatgttcgtaattta 14539455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 51075226 - 51075270
Alignment:
Q  152 ttatcatgttattaattcaattttctaaaaatcattttataatat 196  Q
    |||||||||| ||||||||||||| ||||||| ||||||||||||    
T  51075226 ttatcatgttgttaattcaattttttaaaaattattttataatat 51075270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 216
Target Start/End: Complemental strand, 2247936 - 2247854
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaa 216  Q
    ||||||||||||||||  ||||||| ||| ||| | ||  || ||| || ||||||||||| ||||||||||||||| |||||    
T  2247936 gaagtattatataattgtttatcatattaataagttaagattttaataaacattttataatgtccgtaatttaaaaatgaaaa 2247854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 216
Target Start/End: Complemental strand, 35543412 - 35543358
Alignment:
Q  162 attaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaa 216  Q
    |||||||||||||| ||||||| |||||||||| | | ||||||||||| |||||    
T  35543412 attaattcaattttttaaaaattattttataatgttcctaatttaaaaaagaaaa 35543358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 232
Target Start/End: Original strand, 44145842 - 44145940
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctcc 232  Q
    ||||||||| || || | |||| ||| | ||||||||||||| |||||||||||||||||| ||  ||| ||||||| | || | ||| ||||||||||    
T  44145842 gaagtattacatgatcatttataatgctgttaattcaattttttaaaaatcattttataatgtctttaaattaaaaaaggaatgtaagccctcccctcc 44145940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 34108359 - 34108283
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaa-atcattttataatatccgtaatttaaaaa 210  Q
    ||||||||||| ||| | |||||||||||| | || | |||| ||||| | |||||||||||||||||||||||||||    
T  34108359 gaagtattatacaataatttatcatgttat-attttacttttttaaaataacattttataatatccgtaatttaaaaa 34108283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 6938352 - 6938308
Alignment:
Q  196 tccgtaatttaaaaaggaaaagcaagtcctcccctcccttcccct 240  Q
    |||||||||||||||||||||  || ||||| |||||||||||||    
T  6938352 tccgtaatttaaaaaggaaaaataaatcctctcctcccttcccct 6938308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 67; Significance: 7e-30; HSPs: 27)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 28074236 - 28074130
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    |||||||||||| || | |||||| ||| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||  ||| ||||||||||    
T  28074236 gaagtattatatgatcatttatcaggttgttaattcaattttctaaaaatcattttataatgtccgtaatttaaaaaagaaaagtgagttctcccctccc 28074137  T
Q  234 ttcccct 240  Q
    |||||||    
T  28074136 ttcccct 28074130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 36267686 - 36267580
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    |||||||||||| || | ||||||| || || ||||||||||||||||||||||||||||||||||||||||||||| |||||  ||| |||||||||||    
T  36267686 gaagtattatatgatcatttatcatattgttgattcaattttctaaaaatcattttataatatccgtaatttaaaaaagaaaactaagccctcccctccc 36267587  T
Q  234 ttcccct 240  Q
    |||||||    
T  36267586 ttcccct 36267580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 134 - 240
Target Start/End: Original strand, 33519159 - 33519265
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    |||||||||||| || | |||||||||| |||||||||||||||||||||||||||||||| || |||||||||| | |||||| ||  |||||||||||    
T  33519159 gaagtattatatgatcatttatcatgttgttaattcaattttctaaaaatcattttataatgtctgtaatttaaagaagaaaagtaatccctcccctccc 33519258  T
Q  234 ttcccct 240  Q
    |||||||    
T  33519259 ttcccct 33519265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 48881691 - 48881585
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    |||| |||||||||| | |||||||||| ||||||||||||||| ||||| |||||||||| ||||||||||||||| |||||| ||| | |||||||||    
T  48881691 gaagcattatataatcatttatcatgttgttaattcaattttctgaaaattattttataatgtccgtaatttaaaaaagaaaagtaagccatcccctccc 48881592  T
Q  234 ttcccct 240  Q
    |||||||    
T  48881591 ttcccct 48881585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 37620885 - 37620989
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    |||||||||||||||   ||||||||||  ||||||||||||| ||||||||||||||||| ||| ||||||||||| |||||||||  |||||||||||    
T  37620885 gaagtattatataatcttttatcatgttgataattcaattttccaaaaatcattttataatgtccataatttaaaaaagaaaagcaaaccctcccctccc 37620984  T
Q  234 ttccc 238  Q
    |||||    
T  37620985 ttccc 37620989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 146 - 240
Target Start/End: Complemental strand, 2087860 - 2087766
Alignment:
Q  146 aattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctcccttcccct 240  Q
    ||||| |||||||||| |||||||| |||| ||||||| |||||||||||||||||||||||||| |||||| ||||| | | ||||||||||||    
T  2087860 aattatttatcatgttgttaattcatttttttaaaaattattttataatatccgtaatttaaaaaagaaaagtaagtctttctctcccttcccct 2087766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 154 - 238
Target Start/End: Original strand, 37925972 - 37926056
Alignment:
Q  154 atcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctcccttccc 238  Q
    |||||||| |||||||||||||||||| ||||||||||||| ||||||||||| ||| |||||   |||||||||||||||||||    
T  37925972 atcatgttgttaattcaattttctaaacatcattttataatgtccgtaatttagaaaagaaaaatgagtcctcccctcccttccc 37926056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 30592386 - 30592280
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    |||||||||||| |||| ||||||| | |||| ||||||||| |||||||||||||||| | || |||||||||||| |||||| ||| |||||| ||||    
T  30592386 gaagtattatatgattatttatcatatgattatttcaattttttaaaaatcattttatagtgtctgtaatttaaaaaagaaaagtaagccctcccttccc 30592287  T
Q  234 ttcccct 240  Q
    || ||||    
T  30592286 tttccct 30592280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 154 - 232
Target Start/End: Original strand, 39646600 - 39646678
Alignment:
Q  154 atcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctcc 232  Q
    |||||||| |||||||||||||||||||||||||||||||| |||||||||||||||  |||||  |||| ||||||||    
T  39646600 atcatgttgttaattcaattttctaaaaatcattttataatgtccgtaatttaaaaaataaaagtgagtcatcccctcc 39646678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 134 - 217
Target Start/End: Original strand, 35422075 - 35422158
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaag 217  Q
    ||||||| |||| |||| |||| ||||| ||||||||||||||||||||| |||||||||| |||||||||| |||| ||||||    
T  35422075 gaagtatcatatgattatttattatgttgttaattcaattttctaaaaattattttataatgtccgtaattttaaaaagaaaag 35422158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 166 - 240
Target Start/End: Complemental strand, 31364146 - 31364072
Alignment:
Q  166 attcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctcccttcccct 240  Q
    |||||||||||| |||||||||||||||| ||||||||||| ||| |||||| |||  |||||||||||||||||    
T  31364146 attcaattttcttaaaatcattttataatgtccgtaatttagaaaagaaaagtaagctctcccctcccttcccct 31364072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 21857476 - 21857555
Alignment:
Q  152 ttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctcc 232  Q
    |||||||||| |||||||||||||||||||||||||||||||| | ||||| ||||||  |||||| |||||||| |||||    
T  21857476 ttatcatgttgttaattcaattttctaaaaatcattttataatgttcgtaa-ttaaaagagaaaagtaagtcctctcctcc 21857555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 139 - 240
Target Start/End: Original strand, 48015323 - 48015424
Alignment:
Q  139 attatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctcccttccc 238  Q
    ||||||| || | |||||||||| |||||||||||||| |||||| |||||||||  || |||||||||||| |||||| |||  |||  ||||||||||    
T  48015323 attatatgatcatttatcatgttgttaattcaattttccaaaaattattttataaagtctgtaatttaaaaacgaaaagtaagctctcatctcccttccc 48015422  T
Q  239 ct 240  Q
    ||    
T  48015423 ct 48015424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 48013632 - 48013712
Alignment:
Q  152 ttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctcc 232  Q
    |||||||||| ||||||||||||||||||||| |||||||||  || || ||||||||| |||||| |||  |||||||||    
T  48013632 ttatcatgttgttaattcaattttctaaaaattattttataaagtctgtgatttaaaaacgaaaagtaagctctcccctcc 48013712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 134 - 193
Target Start/End: Complemental strand, 3215993 - 3215934
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataa 193  Q
    |||||||||||| || | ||||||| || |||||||||||||||||||||||||||||||    
T  3215993 gaagtattatatgatcatttatcatattgttaattcaattttctaaaaatcattttataa 3215934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 240
Target Start/End: Original strand, 16833806 - 16833915
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataat---atccgtaatttaaaaaggaaaagcaagtcctcccct 230  Q
    ||||||||| || || | |||||||||||||||||||||||| ||||||| || |||||||    || ||||||| |||| |||||| || ||||| |||    
T  16833806 gaagtattacatgatcatttatcatgttattaattcaattttataaaaattatattataatgaagtctgtaattttaaaaagaaaagtaactcctctcct 16833905  T
Q  231 cccttcccct 240  Q
     |||||||||    
T  16833906 tccttcccct 16833915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 135 - 232
Target Start/End: Original strand, 48094005 - 48094102
Alignment:
Q  135 aagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctcc 232  Q
    ||||||||||| || | ||||||| |||||| ||||||| | ||||||  ||||||||   | ||||||||||||| |||||| || |||||||||||    
T  48094005 aagtattatatgatcatttatcattttattatttcaattctataaaaaagattttatagcgttcgtaatttaaaaaagaaaagtaaatcctcccctcc 48094102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 139 - 194
Target Start/End: Original strand, 8122264 - 8122319
Alignment:
Q  139 attatataattacttatcatgttattaattcaattttctaaaaatcattttataat 194  Q
    ||||||| || | ||||||| || ||||||||||||||||||||| ||||||||||    
T  8122264 attatatgataatttatcatcttgttaattcaattttctaaaaattattttataat 8122319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 150 - 217
Target Start/End: Original strand, 19835836 - 19835903
Alignment:
Q  150 acttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaag 217  Q
    |||||| ||||||||| || |||||| |||| | ||||||||| | ||||||||||||||| ||||||    
T  19835836 acttatgatgttattattttaattttttaaagaacattttatagtttccgtaatttaaaaatgaaaag 19835903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 228
Target Start/End: Complemental strand, 23116393 - 23116298
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatca-ttttataatatccgtaatttaaaaaggaaaagcaagtcctccc 228  Q
    ||||||||||||||| | ||||||||||  || ||||||||| ||| || || ||||||| | || |||||||||||| |||||| ||| ||||||    
T  23116393 gaagtattatataatcatttatcatgttgctatttcaattttttaataaacacttttatagtgtctgtaatttaaaaaagaaaagtaagccctccc 23116298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 240
Target Start/End: Original strand, 18231697 - 18231803
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    |||||||||||| ||   ||||||||||| ||  | || ||| |||||| ||||| ||| | |  |||||||||||| |||||| || ||||||||||||    
T  18231697 gaagtattatatgatcgtttatcatgttaatatgttaactttttaaaaaacatttcatagtgtttgtaatttaaaaatgaaaagtaaatcctcccctccc 18231796  T
Q  234 ttcccct 240  Q
    |||||||    
T  18231797 ttcccct 18231803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 240
Target Start/End: Complemental strand, 4833663 - 4833558
Alignment:
Q  135 aagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccct 234  Q
    ||||||||||| |||  ||||||||||| ||  | || ||| || ||| ||||| ||| | || |||||||||||| |||||| ||  ||||||||||||    
T  4833663 aagtattatatgattgtttatcatgttaataggttaactttttataaaacatttcatagtgtctgtaatttaaaaatgaaaagtaaaccctcccctccct 4833564  T
Q  235 tcccct 240  Q
    ||||||    
T  4833563 tcccct 4833558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 135 - 192
Target Start/End: Original strand, 7791831 - 7791888
Alignment:
Q  135 aagtattatataattacttatcatgttattaattcaattttctaaaaatcattttata 192  Q
    ||||||||||| |||| |||||||||| ||| |||||||||| |||||  ||||||||    
T  7791831 aagtattatatgattatttatcatgtttttatttcaattttcaaaaaagtattttata 7791888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 167 - 228
Target Start/End: Complemental strand, 12670633 - 12670572
Alignment:
Q  167 ttcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctccc 228  Q
    ||||||||||||| ||| || |||||| ||| |||||||||||| |||||| | ||||||||    
T  12670633 ttcaattttctaacaattatattataaaatctgtaatttaaaaaagaaaagtatgtcctccc 12670572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 210
Target Start/End: Original strand, 3143623 - 3143671
Alignment:
Q  162 attaattcaattttctaaaaatcattttataatatccgtaatttaaaaa 210  Q
    |||||||||||||| ||||||| |||||||||| ||  |||||||||||    
T  3143623 attaattcaattttttaaaaattattttataatgtcattaatttaaaaa 3143671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 39856038 - 39856082
Alignment:
Q  196 tccgtaatttaaaaaggaaaagcaagtcctcccctcccttcccct 240  Q
    ||||||||||||||| |||||| ||  ||||||||||||||||||    
T  39856038 tccgtaatttaaaaaagaaaagtaaaccctcccctcccttcccct 39856082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 41008253 - 41008209
Alignment:
Q  196 tccgtaatttaaaaaggaaaagcaagtcctcccctcccttcccct 240  Q
    ||||||||||||||| ||||| ||| | |||||||||||||||||    
T  41008253 tccgtaatttaaaaaagaaaaacaaattctcccctcccttcccct 41008209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 3e-29; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 135 - 240
Target Start/End: Original strand, 35512909 - 35513014
Alignment:
Q  135 aagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccct 234  Q
    ||||||||||| || | |||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||  ||||| ||| ||||||||||||    
T  35512909 aagtattatatgatcatttatcatgttgttaattcaattttctaaaaatcattttataatgtccataatttaaaaaataaaagtaagccctcccctccct 35513008  T
Q  235 tcccct 240  Q
    ||||||    
T  35513009 tcccct 35513014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 40709425 - 40709319
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    |||||||||||| || | ||||||| |  |||||| |||||||||||||| |||||||||||| ||||||||||||| |||||| ||||||||| |||||    
T  40709425 gaagtattatatgatcatttatcatatcgttaatttaattttctaaaaattattttataatattcgtaatttaaaaaagaaaagtaagtcctcctctccc 40709326  T
Q  234 ttcccct 240  Q
    |||||||    
T  40709325 ttcccct 40709319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 134 - 232
Target Start/End: Complemental strand, 1085623 - 1085524
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaattta-aaaaggaaaagcaagtcctcccctcc 232  Q
    |||||||||||| || | |||||||| | ||| ||||||||||||||||||||||| |||| ||||||||||| ||||||||||| ||||||||||||||    
T  1085623 gaagtattatatgatcatttatcatgctgttagttcaattttctaaaaatcattttctaatgtccgtaatttaaaaaaggaaaagtaagtcctcccctcc 1085524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 134 - 240
Target Start/End: Original strand, 25268375 - 25268481
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    |||||||||||| || | |||||| ||| || ||| ||||||||||||||||||||||||| ||||||||||||||| | |||| ||  ||||||||| |    
T  25268375 gaagtattatatgatcatttatcacgttgttgattaaattttctaaaaatcattttataatttccgtaatttaaaaaaggaaagtaaaccctcccctcac 25268474  T
Q  234 ttcccct 240  Q
    |||||||    
T  25268475 ttcccct 25268481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 47071180 - 47071245
Alignment:
Q  152 ttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaag 217  Q
    |||||||||| |||||| ||||||||||||||||||||||||| ||||||||||||||| ||||||    
T  47071180 ttatcatgttgttaattaaattttctaaaaatcattttataatgtccgtaatttaaaaaagaaaag 47071245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 134 - 240
Target Start/End: Original strand, 35927924 - 35928029
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    |||||||||||| || | |||||||||| ||||||||||||||| ||||| ||||||||| ||| |||||||||||| |||||| || || ||||  |||    
T  35927924 gaagtattatatgatcatttatcatgttgttaattcaattttct-aaaattattttataaaatctgtaatttaaaaaagaaaagtaaatcatccctcccc 35928022  T
Q  234 ttcccct 240  Q
    |||||||    
T  35928023 ttcccct 35928029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 237
Target Start/End: Original strand, 2506650 - 2506753
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    |||||||||||| || | |||| || || ||||||| ||||| ||||||| ||||||||||||| |||||||||||| |||||  ||||| || ||||||    
T  2506650 gaagtattatatgatcatttattatattgttaattcgattttttaaaaattattttataatatctgtaatttaaaaaagaaaactaagtcatctcctccc 2506749  T
Q  234 ttcc 237  Q
    ||||    
T  2506750 ttcc 2506753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 232
Target Start/End: Complemental strand, 525232 - 525137
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctcc 232  Q
    ||||||||||||||| | ||||||| || ||||||||| ||||||||||| ||||||| || ||||||||||||||| |||||| || |||||||||||    
T  525232 gaagtattatataatcatttatcatattgttaattcaa-tttctaaaaattattttat-atgtccgtaatttaaaaaagaaaagtaa-tcctcccctcc 525137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 134 - 215
Target Start/End: Original strand, 33643379 - 33643460
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaa 215  Q
    |||||||||||| || | | ||||| ||||||||||||||||||||||||||||||| ||| | | ||||||||||| ||||    
T  33643379 gaagtattatatgatcattcatcatattattaattcaattttctaaaaatcattttaaaatgttcataatttaaaaaagaaa 33643460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 152 - 216
Target Start/End: Original strand, 1344677 - 1344741
Alignment:
Q  152 ttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaa 216  Q
    |||||||||| ||  |||||||||||||||||||||||| ||| ||||||||||||||| |||||    
T  1344677 ttatcatgttgttggttcaattttctaaaaatcattttacaatgtccgtaatttaaaaaagaaaa 1344741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 137 - 217
Target Start/End: Complemental strand, 13387049 - 13386969
Alignment:
Q  137 gtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaag 217  Q
    ||||||||| || | |||||||||| |||||||||||||||||||||| |||||| || ||| ||||| ||||| ||||||    
T  13387049 gtattatatgatcatttatcatgttgttaattcaattttctaaaaatcgttttatgatgtccataattaaaaaaagaaaag 13386969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 180
Target Start/End: Original strand, 17622648 - 17622694
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaa 180  Q
    |||||||||||| || |||||||||||||||||||||||||| ||||    
T  17622648 gaagtattatatgatcacttatcatgttattaattcaattttttaaa 17622694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 51303517 - 51303411
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    |||||||||||| || | |||||||||| |||||||||||||  ||||||||||||| | | |  ||||| ||||||  |||||  || |||||||||||    
T  51303517 gaagtattatatgatcatttatcatgttgttaattcaattttaaaaaaatcattttacattgttggtaatataaaaaataaaagtgagccctcccctccc 51303418  T
Q  234 ttcccct 240  Q
     ||||||    
T  51303417 ctcccct 51303411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 40287388 - 40287313
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaa 210  Q
    ||||||||||||||| | |||| || || ||||||||||||||||||| |||||| | ||| ||| |||||||||||    
T  40287388 gaagtattatataatcatttatgattttgttaattcaattttctaaaactcatttcacaatgtcc-taatttaaaaa 40287313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 240
Target Start/End: Original strand, 20607356 - 20607434
Alignment:
Q  163 ttaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaa-agcaagtcctcccctcccttcccct 240  Q
    |||||| ||||||| ||||||||||||||||| ||| ||||| |||||  ||| || ||  ||||||||||||||||||    
T  20607356 ttaatttaattttcaaaaaatcattttataatgtccataattaaaaaaaaaaatagtaaaccctcccctcccttcccct 20607434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 235
Target Start/End: Original strand, 41498515 - 41498616
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    |||||||||||| ||   ||||||||||| ||  | || ||| || ||| ||||| ||| | ||||||||||||||| |||||| || ||||||||||||    
T  41498515 gaagtattatatgatcgtttatcatgttaatatgttaactttttataaaacatttcatagtgtccgtaatttaaaaatgaaaagtaaatcctcccctccc 41498614  T
Q  234 tt 235  Q
    ||    
T  41498615 tt 41498616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 30010403 - 30010359
Alignment:
Q  196 tccgtaatttaaaaaggaaaagcaagtcctcccctcccttcccct 240  Q
    ||||||||||||| | |||||| || |||||||||||||||||||    
T  30010403 tccgtaatttaaacaagaaaagtaaatcctcccctcccttcccct 30010359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 35349635 - 35349679
Alignment:
Q  196 tccgtaatttaaaaaggaaaagcaagtcctcccctcccttcccct 240  Q
    ||||||||||||||| |||||| ||  ||||||||||||||||||    
T  35349635 tccgtaatttaaaaacgaaaagtaaaccctcccctcccttcccct 35349679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 4e-28; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 134 - 240
Target Start/End: Original strand, 34641103 - 34641207
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    |||||||||||| || | |||||||||| ||||||||||||||||||  |||||||||||| ||||||||||||||| |||||| ||| |||||||||||    
T  34641103 gaagtattatatgatcatttatcatgttgttaattcaattttctaaa--tcattttataatgtccgtaatttaaaaaagaaaagtaagccctcccctccc 34641200  T
Q  234 ttcccct 240  Q
    |||||||    
T  34641201 ttcccct 34641207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 134 - 240
Target Start/End: Original strand, 24253833 - 24253939
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    ||||| ||||||||| | |||||||||| ||||||||| ||||||||| |||||||||||| ||||||||||||||| |||||| || |||| |||||||    
T  24253833 gaagtgttatataatcatttatcatgttgttaattcaactttctaaaactcattttataatgtccgtaatttaaaaaagaaaagtaaatccttccctccc 24253932  T
Q  234 ttcccct 240  Q
    |||||||    
T  24253933 ttcccct 24253939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 134 - 240
Target Start/End: Original strand, 26135908 - 26136014
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    ||||||||||||||||| ||||||| || |||||||||||||| |||||| |||||||||| ||||||||||||||| |||||| ||  ||||| |||||    
T  26135908 gaagtattatataattatttatcatattgttaattcaattttcaaaaaattattttataatgtccgtaatttaaaaaagaaaagtaaaccctccactccc 26136007  T
Q  234 ttcccct 240  Q
    |||||||    
T  26136008 ttcccct 26136014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 134 - 240
Target Start/End: Complemental strand, 8432392 - 8432288
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    ||||||||||| ||||| |||||||||| ||||||||||||| |||||||||||||||||| || |||||| |||||  ||||| ||||||||||||| |    
T  8432392 gaagtattataaaattatttatcatgttgttaattcaattttgtaaaaatcattttataatgtctgtaattaaaaaa--aaaagtaagtcctcccctctc 8432295  T
Q  234 ttcccct 240  Q
    |||||||    
T  8432294 ttcccct 8432288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 134 - 216
Target Start/End: Complemental strand, 10943747 - 10943665
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaa 216  Q
    ||||||||||||||||| |||| ||||| |||||||||||||||||||||||||||||||||||  ||||||||||| |||||    
T  10943747 gaagtattatataattatttattatgttgttaattcaattttctaaaaatcattttataatatctataatttaaaaaagaaaa 10943665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 134 - 240
Target Start/End: Original strand, 44412472 - 44412578
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    |||||||||||| || | |||||||||| |||||||||||||| ||||||||||||| | | | |||||||||||||  |||||  ||||||||||||||    
T  44412472 gaagtattatatgatgatttatcatgttgttaattcaattttcaaaaaatcattttacattgttcgtaatttaaaaaataaaagtgagtcctcccctccc 44412571  T
Q  234 ttcccct 240  Q
    |||||||    
T  44412572 ttcccct 44412578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 136 - 240
Target Start/End: Original strand, 55428492 - 55428596
Alignment:
Q  136 agtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccctt 235  Q
    |||||||||| || | |||||| ||| |||||||||||||||||||||||| || |||| ||||||||||||| | |||||| || || |||||||||||    
T  55428492 agtattatatgatcatttatcacgttgttaattcaattttctaaaaatcatcttgtaatgtccgtaatttaaagaagaaaagtaaatcatcccctccctt 55428591  T
Q  236 cccct 240  Q
    |||||    
T  55428592 cccct 55428596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 134 - 216
Target Start/End: Original strand, 40858676 - 40858758
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaa 216  Q
    |||||||||||| || | |||||||||| |||||||||||||| ||| ||||||||||||| ||||||||||||||| |||||    
T  40858676 gaagtattatatgatcatttatcatgttgttaattcaattttcaaaagatcattttataatgtccgtaatttaaaaaagaaaa 40858758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 134 - 205
Target Start/End: Original strand, 42772143 - 42772214
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaattt 205  Q
    |||||||||||| || | |||||||||| |||||||||||||| ||||||||||||||||| ||||||||||    
T  42772143 gaagtattatatgatcatttatcatgttgttaattcaattttcaaaaaatcattttataatgtccgtaattt 42772214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 41414189 - 41414265
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaa 210  Q
    |||||||||||| || | |||||||||| |||| ||||||||||||||||||||||||||| ||| | |||||||||    
T  41414189 gaagtattatatgatcatttatcatgttgttaactcaattttctaaaaatcattttataatgtccctgatttaaaaa 41414265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 152 - 216
Target Start/End: Complemental strand, 54985808 - 54985744
Alignment:
Q  152 ttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaa 216  Q
    ||||||| || ||||||||||||||||||||||| |||||||| ||||||||||||||| |||||    
T  54985808 ttatcatattgttaattcaattttctaaaaatcaatttataatgtccgtaatttaaaaacgaaaa 54985744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 217
Target Start/End: Complemental strand, 17474339 - 17474256
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaag 217  Q
    |||||||||| | |||| ||||||| || |||||||||||||  |||||| |||||||||| ||||||||||||||| ||||||    
T  17474339 gaagtattatttgattatttatcatattgttaattcaatttttaaaaaattattttataatgtccgtaatttaaaaaagaaaag 17474256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 134 - 209
Target Start/End: Complemental strand, 21090204 - 21090129
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaa 209  Q
    |||||||||||| || |  ||||||||| |||||||||||||| ||||||| |||||||||||| |||||||||||    
T  21090204 gaagtattatatgataatatatcatgttgttaattcaattttcaaaaaatcgttttataatatctgtaatttaaaa 21090129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 152 - 217
Target Start/End: Complemental strand, 18086095 - 18086030
Alignment:
Q  152 ttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaag 217  Q
    |||| ||||| |||||||||||||||||||| ||||||||||| || |||||||||||| ||||||    
T  18086095 ttattatgttgttaattcaattttctaaaaaacattttataatgtctgtaatttaaaaaagaaaag 18086030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 157 - 216
Target Start/End: Original strand, 48683747 - 48683806
Alignment:
Q  157 atgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaa 216  Q
    ||||| |||||||||||| ||||||||||||||||||| | ||||||||||||| |||||    
T  48683747 atgttgttaattcaatttcctaaaaatcattttataatgttcgtaatttaaaaaagaaaa 48683806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 211
Target Start/End: Complemental strand, 42699745 - 42699668
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaag 211  Q
    |||||||||||| || | ||||||| ||  |||||||||||||||||| | |||||||||| ||| ||||||||||||    
T  42699745 gaagtattatatgatcatttatcatattgataattcaattttctaaaatttattttataatgtccataatttaaaaag 42699668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 190
Target Start/End: Original strand, 46978538 - 46978594
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcatttta 190  Q
    ||||||||||||||| | |||||||||| |||||| |||||| ||||||||||||||    
T  46978538 gaagtattatataatcatttatcatgttgttaattaaattttataaaaatcatttta 46978594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 134 - 209
Target Start/End: Original strand, 36727287 - 36727362
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaa 209  Q
    |||||||||||| || | |||||||||| |||| | |||||||| ||||| |||||||||| | ||||||||||||    
T  36727287 gaagtattatatgataatttatcatgttgttaagttaattttcttaaaattattttataatgttcgtaatttaaaa 36727362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 24560288 - 24560244
Alignment:
Q  196 tccgtaatttaaaaaggaaaagcaagtcctcccctcccttcccct 240  Q
    ||||||||||||||| ||||| |||  ||||||||||||||||||    
T  24560288 tccgtaatttaaaaaagaaaaacaaaccctcccctcccttcccct 24560244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 184 - 232
Target Start/End: Complemental strand, 25179977 - 25179929
Alignment:
Q  184 cattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctcc 232  Q
    ||||||||| | ||| ||||||||||| |||||| ||||||||||||||    
T  25179977 cattttatagtgtccataatttaaaaatgaaaagtaagtcctcccctcc 25179929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 240
Target Start/End: Original strand, 28582682 - 28582726
Alignment:
Q  196 tccgtaatttaaaaaggaaaagcaagtcctcccctcccttcccct 240  Q
    ||||||||||||||| |||||| ||  ||||||||||||||||||    
T  28582682 tccgtaatttaaaaaagaaaagtaaaccctcccctcccttcccct 28582726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 138 - 240
Target Start/End: Original strand, 242331 - 242433
Alignment:
Q  138 tattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctcccttcc 237  Q
    |||||||| || | |||||||||  ||||||||||||| |||||||||||||||||| ||||||||||||||| |||||| ||  |||||||||||||||    
T  242331 tattatatcatcatttatcatgtcgttaattcaattttttaaaaatcattttataatgtccgtaatttaaaaaagaaaagtaaaccctcccctcccttcc 242430  T
Q  238 cct 240  Q
    |||    
T  242431 cct 242433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 59; Significance: 4e-25; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 134 - 240
Target Start/End: Original strand, 26318416 - 26318522
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    |||||||||||| || | |||||||||| ||||||||||||||||||| ||||||||||| |||| ||||||||||| |||||| || || |||||||||    
T  26318416 gaagtattatatgatcaattatcatgttgttaattcaattttctaaaagtcattttataaaatccataatttaaaaaagaaaagtaaatcttcccctccc 26318515  T
Q  234 ttcccct 240  Q
    || ||||    
T  26318516 tttccct 26318522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 9051649 - 9051591
Alignment:
Q  152 ttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaa 210  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  9051649 ttatcatgttgttaattcaattttctaaaaatcattttataatatccgtaatttaaaaa 9051591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 134 - 236
Target Start/End: Original strand, 10293359 - 10293461
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    |||||||||||| |||| |||| ||||| | |||||| |||||||||||||||||||||||||| ||||||| |||| |||||| |||  ||||||||||    
T  10293359 gaagtattatatgattatttatgatgttgtcaattcagttttctaaaaatcattttataatatctgtaatttgaaaaagaaaagtaagctctcccctccc 10293458  T
Q  234 ttc 236  Q
    |||    
T  10293459 ttc 10293461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 134 - 217
Target Start/End: Original strand, 31799032 - 31799115
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaag 217  Q
    |||||||||||| || | |||||||||| |||||||||||||  |||||| |||||||||||||||||||||||||| ||||||    
T  31799032 gaagtattatatgatcatttatcatgttgttaattcaatttttaaaaaattattttataatatccgtaatttaaaaaagaaaag 31799115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 138 - 240
Target Start/End: Complemental strand, 34176700 - 34176598
Alignment:
Q  138 tattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctcccttcc 237  Q
    |||||||| || | |||| || || ||||||||||||| ||||||||| |||||||| | ||||||||||||| |||||| ||||| ||||||||| |||    
T  34176700 tattatatgatcatttattatattgttaattcaattttttaaaaatcaatttataattttcgtaatttaaaaaagaaaagtaagtcttcccctcccatcc 34176601  T
Q  238 cct 240  Q
    |||    
T  34176600 cct 34176598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 15323339 - 15323406
Alignment:
Q  137 gtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatt 204  Q
    ||||||||| || | || ||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  15323339 gtattatatgatcatttgtcatgttgttaattcaattttctaaaaatcattttataatgtccgtaatt 15323406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 137 - 204
Target Start/End: Original strand, 15353477 - 15353544
Alignment:
Q  137 gtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatt 204  Q
    ||||||||| || | |||| ||||| |||||||||||||||||||||||||||||||| |||||||||    
T  15353477 gtattatatgatcatttataatgttgttaattcaattttctaaaaatcattttataatgtccgtaatt 15353544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 223
Target Start/End: Original strand, 3841196 - 3841286
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaa--atcattttataatatccgtaatttaaaaaggaaaagcaagtc 223  Q
    |||||||||||| || | ||||||| || ||||||||||||| |||||  ||||||||||||| ||||||||||||||| |||||| |||||    
T  3841196 gaagtattatatcatcatttatcat-ttgttaattcaattttgtaaaaaaatcattttataatgtccgtaatttaaaaaagaaaagtaagtc 3841286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 134 - 217
Target Start/End: Complemental strand, 25468532 - 25468449
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaag 217  Q
    ||||||||||||||| | |||||| ||| |||| | |||||||| ||||| |||||||||| ||| ||||||||||| ||||||    
T  25468532 gaagtattatataatcatttatcacgttgttaaattaattttcttaaaattattttataatgtccataatttaaaaaagaaaag 25468449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 194
Target Start/End: Complemental strand, 15373729 - 15373672
Alignment:
Q  137 gtattatataattacttatcatgttattaattcaattttctaaaaatcattttataat 194  Q
    ||||||||| || | || ||||||| ||||||||||||||||||||||||||||||||    
T  15373729 gtattatatgatcatttgtcatgttgttaattcaattttctaaaaatcattttataat 15373672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 4097368 - 4097292
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaa 210  Q
    |||||||| ||| || | |||||||||| ||||||||||||||||||||  |||||||||| ||||| ||| |||||    
T  4097368 gaagtattgtatgatcatttatcatgttgttaattcaattttctaaaaaatattttataatgtccgtgattcaaaaa 4097292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 23091121 - 23091176
Alignment:
Q  186 ttttataatatccgtaattt-aaaaaggaaaagcaagtcctcccctcccttcccct 240  Q
    |||||||||||||||||||| ||||| |||||| ||| ||||||||||||||||||    
T  23091121 ttttataatatccgtaatttaaaaaaagaaaagtaagccctcccctcccttcccct 23091176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 240
Target Start/End: Original strand, 10818327 - 10818433
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    |||||||||||| || | ||||||||||| ||  | ||| || |||||| ||||| ||| | ||||||||||||||| |||||| ||  |||||||||||    
T  10818327 gaagtattatatgatcatttatcatgttaatatgttaatattttaaaaaacatttcatagtgtccgtaatttaaaaatgaaaagtaaaccctcccctccc 10818426  T
Q  234 ttcccct 240  Q
    | |||||    
T  10818427 tacccct 10818433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 134 - 233
Target Start/End: Complemental strand, 30850045 - 30849948
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    |||||||||||| ||   |||||||||||||| || ||||||  |||||  |||||||| ||| ||||||||||||| |||| | || ||||||||||||    
T  30850045 gaagtattatatgatcgtttatcatgttattattttaatttt--aaaaaatattttatagtatgcgtaatttaaaaacgaaatgtaaatcctcccctccc 30849948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 9719102 - 9719058
Alignment:
Q  196 tccgtaatttaaaaaggaaaagcaagtcctcccctcccttcccct 240  Q
    ||||||||||||||| |||||  || |||||||||||||||||||    
T  9719102 tccgtaatttaaaaatgaaaaataaatcctcccctcccttcccct 9719058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 196 - 240
Target Start/End: Complemental strand, 14515544 - 14515500
Alignment:
Q  196 tccgtaatttaaaaaggaaaagcaagtcctcccctcccttcccct 240  Q
    ||||||||||||||| ||||| |||  ||||||||||||||||||    
T  14515544 tccgtaatttaaaaaagaaaaacaaaccctcccctcccttcccct 14515500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 21)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 138 - 240
Target Start/End: Complemental strand, 42296432 - 42296330
Alignment:
Q  138 tattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctcccttcc 237  Q
    |||||||| || | |||| ||||| |||||||| |||||||||| |||||||||||||||||||||||||||| |||||| ||||||| | |||||||||    
T  42296432 tattatatgatcatttattatgttgttaattcatttttctaaaattcattttataatatccgtaatttaaaaaagaaaagtaagtccttcactcccttcc 42296333  T
Q  238 cct 240  Q
    |||    
T  42296332 cct 42296330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 135 - 240
Target Start/End: Original strand, 42813732 - 42813837
Alignment:
Q  135 aagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccct 234  Q
    ||||||||||| |||| |||||| ||| |||||||||||||||||||||||||||||||| | ||||||||||||| |||||  ||| | ||||||| ||    
T  42813732 aagtattatatgattatttatcaggttgttaattcaattttctaaaaatcattttataatgttcgtaatttaaaaaagaaaaataagccatcccctctct 42813831  T
Q  235 tcccct 240  Q
    ||||||    
T  42813832 tcccct 42813837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 134 - 238
Target Start/End: Original strand, 45257418 - 45257522
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    |||||||||||| || | ||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||| |||||| ||  | || ||||||    
T  45257418 gaagtattatatgatcatttatcatattgttaattcaattttcaaaaaatcattttataatatccgtaatttaaaaaagaaaagtaaaccatctcctccc 45257517  T
Q  234 ttccc 238  Q
    |||||    
T  45257518 ttccc 45257522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 134 - 220
Target Start/End: Original strand, 35325380 - 35325466
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaa 220  Q
    |||||||||||| || | |||||||||||||||||||||||| ||||||| |||||||||| ||  |||||||||||||||||||||    
T  35325380 gaagtattatatgatcatttatcatgttattaattcaattttttaaaaattattttataatgtcgttaatttaaaaaggaaaagcaa 35325466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 155 - 237
Target Start/End: Original strand, 16713657 - 16713739
Alignment:
Q  155 tcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctcccttcc 237  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||| ||| |||| ||||| ||||  ||| ||||||||||    
T  16713657 tcatgttattaattcaattttctaaaaattattttataatatccgtagttttaaaaagaaaaacaagctctctcctcccttcc 16713739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 3094486 - 3094410
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaa 210  Q
    |||||||||||| |||| |||||||||| ||||||||||||||||| |||||||||||||  | |||||||||||||    
T  3094486 gaagtattatatgattatttatcatgttgttaattcaattttctaagaatcattttataacgttcgtaatttaaaaa 3094410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 210
Target Start/End: Complemental strand, 15085833 - 15085757
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaa 210  Q
    |||||||||||| || | |||||| ||| |||||||||||||||||||||||||||||||| |||||||||| ||||    
T  15085833 gaagtattatatgatcatttatcaagttgttaattcaattttctaaaaatcattttataatgtccgtaattttaaaa 15085757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 152 - 217
Target Start/End: Original strand, 9313116 - 9313181
Alignment:
Q  152 ttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaag 217  Q
    |||||| ||| |||||||||||||| ||||||||||||||||| || |||||||||||||||||||    
T  9313116 ttatcaagttgttaattcaattttcgaaaaatcattttataatgtctgtaatttaaaaaggaaaag 9313181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 34187695 - 34187759
Alignment:
Q  141 tatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaattt 205  Q
    |||||||| | |||||||||| |||||||||||||||||||||||||||||||| ||| ||||||    
T  34187695 tatataatcatttatcatgttgttaattcaattttctaaaaatcattttataatgtccataattt 34187759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 154 - 240
Target Start/End: Original strand, 22356134 - 22356221
Alignment:
Q  154 atcatgttattaattcaattttctaaaaatcattttat-aatatccgtaatttaaaaaggaaaagcaagtcctcccctcccttcccct 240  Q
    ||||| || ||||||||||||||||||||||||||||| ||| ||||||||||||||| |||||   |  ||||||||||||||||||    
T  22356134 atcattttgttaattcaattttctaaaaatcattttataaatgtccgtaatttaaaaaagaaaaatgaaccctcccctcccttcccct 22356221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 138 - 240
Target Start/End: Original strand, 31061474 - 31061577
Alignment:
Q  138 tattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaattt-aaaaaggaaaagcaagtcctcccctcccttc 236  Q
    |||||||| || | |||||||||| |||||||||||||| |||| ||| |||||||| || ||||||| ||||| |||||| || ||||||||||| |||    
T  31061474 tattatatgatcatttatcatgttgttaattcaattttcaaaaagtcactttataatgtctgtaatttaaaaaaagaaaagtaaatcctcccctccattc 31061573  T
Q  237 ccct 240  Q
    ||||    
T  31061574 ccct 31061577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 157 - 232
Target Start/End: Complemental strand, 36052197 - 36052122
Alignment:
Q  157 atgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctcc 232  Q
    ||||| |||||||||||||||||||||||||||||||| |  |||||||||||  |||||| ||||| ||||||||    
T  36052197 atgttgttaattcaattttctaaaaatcattttataatgtatgtaatttaaaatagaaaagtaagtcgtcccctcc 36052122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 210
Target Start/End: Complemental strand, 1052870 - 1052812
Alignment:
Q  152 ttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaa 210  Q
    |||||||||| ||||||||||||||||||||| |||||||||||||  |||||||||||    
T  1052870 ttatcatgttgttaattcaattttctaaaaattattttataatatcgataatttaaaaa 1052812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 134 - 230
Target Start/End: Original strand, 33265717 - 33265813
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccct 230  Q
    |||||||||||| || | ||||||| || |||||||||||||| ||||||||||||| | | | | |||||||||||  |||||| |||||||||||    
T  33265717 gaagtattatatgatcatttatcatattgttaattcaattttcaaaaaatcattttacattgttcataatttaaaaaataaaagcgagtcctcccct 33265813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 134 - 209
Target Start/End: Original strand, 45098280 - 45098355
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaa 209  Q
    |||||||||||| || | |||||||||| |||||||||||||  ||||| ||||||||||| || |||||||||||    
T  45098280 gaagtattatatgatcatttatcatgttgttaattcaatttttcaaaaaccattttataatgtctgtaatttaaaa 45098355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 134 - 216
Target Start/End: Original strand, 21502144 - 21502226
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaa 216  Q
    |||||||||||| |  | ||||| |||| ||||| ||||||||| ||||| ||||||||||||||||| |||||||| |||||    
T  21502144 gaagtattatatgaccatttatcttgttgttaatgcaattttcttaaaattattttataatatccgtagtttaaaaaagaaaa 21502226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 134 - 190
Target Start/End: Complemental strand, 31928177 - 31928121
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcatttta 190  Q
    |||||||||||| || | ||||||||||||||||||||||||  |||||||||||||    
T  31928177 gaagtattatatgatcatttatcatgttattaattcaattttaaaaaaatcatttta 31928121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 134 - 236
Target Start/End: Complemental strand, 31795902 - 31795800
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    |||||||||||| ||   |||||||||| ||| || | ||||  ||||| | ||| ||| | ||||||||||||||| |||||| |||||||||||||||    
T  31795902 gaagtattatatgatcgtttatcatgttgttattttattttttaaaaaaacttttcatagtgtccgtaatttaaaaacgaaaagtaagtcctcccctccc 31795803  T
Q  234 ttc 236  Q
    |||    
T  31795802 ttc 31795800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 179 - 240
Target Start/End: Original strand, 887266 - 887327
Alignment:
Q  179 aaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctcccttcccct 240  Q
    |||| |||||||||  |||||||||||||||| |||||| |||  |||||||||||||||||    
T  887266 aaaaacattttatagcatccgtaatttaaaaaagaaaagtaagcgctcccctcccttcccct 887327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 152 - 215
Target Start/End: Complemental strand, 8554414 - 8554351
Alignment:
Q  152 ttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaa 215  Q
    |||||||| | |||||||||||||  |||||| |||||||||| |||||||||| |||| ||||    
T  8554414 ttatcatgatgttaattcaatttttaaaaaattattttataatgtccgtaatttgaaaaagaaa 8554351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 154 - 196
Target Start/End: Complemental strand, 2381100 - 2381058
Alignment:
Q  154 atcatgttattaattcaattttctaaaaatcattttataatat 196  Q
    |||||||| | ||||||||||||||||| ||||||||||||||    
T  2381100 atcatgttgtcaattcaattttctaaaattcattttataatat 2381058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 134 - 217
Target Start/End: Original strand, 17651 - 17734
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaag 217  Q
    |||||||||||| |||| ||||||||||  ||||||||||||| |||||||||||||||||||  |||||||||||| ||||||    
T  17651 gaagtattatatgattatttatcatgttgctaattcaattttcaaaaaatcattttataatatttgtaatttaaaaaagaaaag 17734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 135 - 226
Target Start/End: Complemental strand, 1529 - 1438
Alignment:
Q  135 aagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctc 226  Q
    ||||||||||| || | |||||| ||| ||||||||||||||||||||||||| |||||| |||| | |||||||| |||||| ||||||||    
T  1529 aagtattatatgatcatttatcaagttgttaattcaattttctaaaaatcattctataatgtccgcagtttaaaaaagaaaagtaagtcctc 1438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0119 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0119
Description:

Target: scaffold0119; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 220
Target Start/End: Original strand, 37494 - 37580
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaa 220  Q
    ||||| |||||| || |||||||||||| |||||| | ||||||||||||||| ||||| | || |||||||||||| |||||||||    
T  37494 gaagtgttatatgatcacttatcatgttgttaattaagttttctaaaaatcatcttatattgtctgtaatttaaaaaagaaaagcaa 37580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 134 - 240
Target Start/End: Original strand, 184718 - 184824
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    |||||||||||| || |  ||||||||| |||||||||||||  ||||||||||||||||| ||| ||||||||||| ||| || ||  |||||| ||||    
T  184718 gaagtattatatgataatatatcatgttgttaattcaattttaaaaaaatcattttataatgtccataatttaaaaaagaatagtaaaccctcccttccc 184817  T
Q  234 ttcccct 240  Q
    || ||||    
T  184818 tttccct 184824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 138 - 217
Target Start/End: Original strand, 53000 - 53079
Alignment:
Q  138 tattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaag 217  Q
    |||||||| || | |||||||||| ||| |||||||||| ||||||||||| |||||  || ||||||||||| ||||||    
T  53000 tattatatgatcatttatcatgttgttagttcaattttcaaaaaatcatttcataatgcccataatttaaaaaagaaaag 53079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 233
Target Start/End: Original strand, 8258 - 8357
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattcaattttctaaaaatcattttataatatccgtaatttaaaaaggaaaagcaagtcctcccctccc 233  Q
    |||||||||||| || | | |||||||| ||||||||||||| ||||||| |||||||||  ||  ||| ||||||| | || | ||| |||||||||||    
T  8258 gaagtattatatgatcattaatcatgttgttaattcaattttttaaaaataattttataacgtctttaaattaaaaaaggaatgtaagccctcccctccc 8357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1414 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold1414
Description:

Target: scaffold1414; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 210
Target Start/End: Original strand, 412 - 489
Alignment:
Q  134 gaagtattatataattacttatcatgttattaattc-aattttctaaaaatcattttataatatccgtaatttaaaaa 210  Q
    |||||||| ||| || | |||||||| | ||||||  |||||||||||||||||||||||||| | ||| ||||||||    
T  412 gaagtattttattatcatttatcatgctgttaattttaattttctaaaaatcattttataatacctgtagtttaaaaa 489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University