View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1502_low_1 (Length: 661)
Name: NF1502_low_1
Description: NF1502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1502_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 538; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 538; E-Value: 0
Query Start/End: Original strand, 18 - 658
Target Start/End: Original strand, 53956968 - 53957631
Alignment:
| Q |
18 |
cacatataactcagcaccctgtgcaagaatcaatcttcctttttcaaagtcaaaatccaaatcgtagttgtcttcaataggcaagatgggggctccccca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53956968 |
cacatataactcagcaccctgtgcaagaatcaatcttcctttttcaaagtcaaaatccaaatcgtagttgtcttcaataggcaagatgggggctccccca |
53957067 |
T |
|
| Q |
118 |
ttcaatctgttccttgatcctgatcttactttaagtgtggctgctccttttaatgctacagttagccaacaatttttgttcagtaacagattttgttcac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
53957068 |
ttcaatctgttccttgatcctgatcttactttaagtgtggctgctccttttaatgctacagttagccaacaatttttgttcagtaacagatt--gttcac |
53957165 |
T |
|
| Q |
218 |
ccatattaaattttaaaaaataattgacataaaaagtttattttttattggtgggggg-----tcatgttatgactgtaaatcttttgctaattctagca |
312 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
53957166 |
ccatattaaatttaaaaaaataattgacataaaaagtttattttttattggtgggggggggggtcatgttatgactgtaaatcttttgctaattctagca |
53957265 |
T |
|
| Q |
313 |
tatatata--------------------ataccccaaaactatgaaccacgaacactcattggattagacgtgtcccaccgacacatataattacactga |
392 |
Q |
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| T |
53957266 |
tatatatatatatatatatatatatgtaataccccaaaactatgaaccacagacactcattggattagacgtgtcccaccgacaaatataattacactga |
53957365 |
T |
|
| Q |
393 |
atcgtgtccggtgtctgtgtccgtattcgttcttcatagtctcaaaataattgtattaaataaaagtatgagttgaaataataaaaattactacatgttg |
492 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53957366 |
atcgtgtccggtgtctgtgtccgtattcgtgcttcatagtctcaaaataattgtattaaataaaagtatgagttgaaataataaaaattactacatgttg |
53957465 |
T |
|
| Q |
493 |
cagctgcagcagtgagagttaggatatcactagcacttgtgccattcatggctgagccaataacacttctaagatcctctttcttagctccctttgctac |
592 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | | |
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| T |
53957466 |
cagctgcagcagtgagagttaggatatcactagcacttgtgccattcatggctgagccaataacacttctaagatcctctttcttagctcccattgattc |
53957565 |
T |
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| Q |
593 |
agctacttttgcacactgagcagctaccaaagcagcagcagaggctattgctttctctctatcttc |
658 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
53957566 |
agctacttttgcacactgagcagctaccaaagcagcagcagaggctattgctttctctctatcttc |
53957631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 34; Significance: 0.000000001; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 332 - 390
Target Start/End: Complemental strand, 17124276 - 17124216
Alignment:
| Q |
332 |
ctatgaaccacgaacactcattggattagacgtgtcc--caccgacacatataattacact |
390 |
Q |
| |
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|||||||||||| |||||||| ||||||||||||| | |||||| ||||||||||||||| |
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| T |
17124276 |
ctatgaaccacggacactcatcggattagacgtgttcgacaccgatacatataattacact |
17124216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 333 - 394
Target Start/End: Original strand, 34691770 - 34691833
Alignment:
| Q |
333 |
tatgaaccacgaacactcattggattagacgtgtcc--caccgacacatataattacactgaat |
394 |
Q |
| |
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|||||| |||| |||||| | ||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
34691770 |
tatgaaacacggacactcctcggattaggcgtgtccgacaccgacacatataattacactgaat |
34691833 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 333 - 394
Target Start/End: Original strand, 34714182 - 34714245
Alignment:
| Q |
333 |
tatgaaccacgaacactcattggattagacgtgtcc--caccgacacatataattacactgaat |
394 |
Q |
| |
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|||||| |||| |||||| | ||||||| ||||||| |||||||||||||||||||||||||| |
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| T |
34714182 |
tatgaaacacggacactcctcggattaggcgtgtccgacaccgacacatataattacactgaat |
34714245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 332 - 394
Target Start/End: Original strand, 31855772 - 31855836
Alignment:
| Q |
332 |
ctatgaaccacgaacactcattggattagacgtgtcc--caccgacacatataattacactgaat |
394 |
Q |
| |
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||||||| |||||||||| || |||||||||||| | ||||||||||| |||||||||||||| |
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| T |
31855772 |
ctatgaagtacgaacactccttagattagacgtgttcgacaccgacacatctaattacactgaat |
31855836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 394 - 431
Target Start/End: Complemental strand, 7171483 - 7171446
Alignment:
| Q |
394 |
tcgtgtccggtgtctgtgtccgtattcgttcttcatag |
431 |
Q |
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||||||||||||||||||||||||| ||| |||||||| |
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| T |
7171483 |
tcgtgtccggtgtctgtgtccgtatccgtgcttcatag |
7171446 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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