View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1502_low_4 (Length: 393)

Name: NF1502_low_4
Description: NF1502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1502_low_4
NF1502_low_4
[»] chr2 (11 HSPs)
chr2 (26-239)||(41700845-41701065)
chr2 (245-386)||(41701169-41701310)
chr2 (95-168)||(24450600-24450673)
chr2 (60-142)||(30930185-30930269)
chr2 (76-168)||(24548450-24548543)
chr2 (76-157)||(28143928-28144012)
chr2 (94-152)||(45002376-45002433)
chr2 (117-157)||(3912528-3912568)
chr2 (76-168)||(24450980-24451074)
chr2 (98-151)||(630171-630224)
chr2 (117-157)||(30930058-30930098)
[»] chr7 (32 HSPs)
chr7 (76-168)||(33536670-33536764)
chr7 (60-157)||(20561579-20561678)
chr7 (63-157)||(2486377-2486473)
chr7 (60-168)||(21665628-21665737)
chr7 (97-157)||(8237847-8237907)
chr7 (94-166)||(44603916-44603988)
chr7 (94-157)||(1502224-1502287)
chr7 (98-157)||(2739815-2739874)
chr7 (87-157)||(25480486-25480556)
chr7 (97-157)||(18869528-18869588)
chr7 (94-142)||(44606952-44607000)
chr7 (101-168)||(18869739-18869806)
chr7 (99-157)||(8669610-8669668)
chr7 (78-157)||(9669436-9669517)
chr7 (99-168)||(8669738-8669807)
chr7 (99-168)||(8669877-8669946)
chr7 (76-157)||(29529633-29529714)
chr7 (100-168)||(24865204-24865272)
chr7 (63-168)||(33536854-33536961)
chr7 (94-157)||(3743122-3743185)
chr7 (76-168)||(9669649-9669742)
chr7 (95-166)||(9677059-9677130)
chr7 (98-157)||(21666244-21666303)
chr7 (84-168)||(28644942-28645028)
chr7 (111-168)||(21666075-21666132)
chr7 (78-168)||(24718992-24719084)
chr7 (98-151)||(24719213-24719266)
chr7 (98-155)||(28645295-28645352)
chr7 (124-168)||(14657334-14657378)
chr7 (76-157)||(29239370-29239453)
chr7 (97-168)||(35144569-35144643)
chr7 (97-157)||(42586214-42586274)
[»] chr4 (15 HSPs)
chr4 (94-168)||(25051198-25051272)
chr4 (60-168)||(25051331-25051440)
chr4 (94-168)||(25051038-25051112)
chr4 (63-157)||(37996671-37996767)
chr4 (98-166)||(11132268-11132336)
chr4 (94-157)||(32668835-32668898)
chr4 (78-157)||(13540460-13540541)
chr4 (61-151)||(19583368-19583457)
chr4 (76-149)||(16177287-16177362)
chr4 (76-168)||(34852996-34853088)
chr4 (76-168)||(13540673-13540766)
chr4 (95-166)||(13542003-13542074)
chr4 (101-151)||(19585334-19585384)
chr4 (63-168)||(25446942-25447047)
chr4 (109-157)||(10326111-10326159)
[»] chr1 (22 HSPs)
chr1 (84-168)||(43761347-43761433)
chr1 (95-168)||(3592626-3592699)
chr1 (63-157)||(34903612-34903708)
chr1 (101-157)||(39313088-39313144)
chr1 (117-182)||(3591774-3591840)
chr1 (94-156)||(11080645-11080707)
chr1 (60-151)||(15198750-15198843)
chr1 (63-168)||(16682063-16682169)
chr1 (95-168)||(15913300-15913373)
chr1 (84-166)||(32034942-32035026)
chr1 (101-168)||(16086900-16086967)
chr1 (117-168)||(39157547-39157598)
chr1 (64-157)||(39312935-39313032)
chr1 (94-156)||(15121826-15121887)
chr1 (94-156)||(15146014-15146075)
chr1 (98-168)||(46022945-46023015)
chr1 (78-140)||(3591906-3591970)
chr1 (98-151)||(48994897-48994950)
chr1 (75-168)||(15114838-15114933)
chr1 (75-168)||(15123048-15123143)
chr1 (75-168)||(15139354-15139449)
chr1 (75-168)||(15147236-15147331)
[»] chr6 (17 HSPs)
chr6 (64-157)||(31794944-31795038)
chr6 (100-168)||(11959866-11959934)
chr6 (63-151)||(5089615-5089705)
chr6 (94-181)||(11854208-11854295)
chr6 (84-140)||(15555445-15555501)
chr6 (101-168)||(2999472-2999539)
chr6 (94-157)||(15554430-15554493)
chr6 (63-176)||(15556434-15556547)
chr6 (103-162)||(15554776-15554836)
chr6 (94-142)||(15555126-15555174)
chr6 (60-147)||(31794770-31794860)
chr6 (100-155)||(15555933-15555988)
chr6 (101-147)||(15556292-15556338)
chr6 (94-168)||(15558795-15558868)
chr6 (62-157)||(4979870-4979964)
chr6 (98-168)||(7566121-7566188)
chr6 (76-157)||(31480956-31481039)
[»] chr5 (23 HSPs)
chr5 (118-168)||(40373650-40373700)
chr5 (60-147)||(41912815-41912904)
chr5 (60-143)||(26657521-26657605)
chr5 (60-143)||(26929109-26929193)
chr5 (60-155)||(3419995-3420091)
chr5 (101-168)||(17762113-17762180)
chr5 (76-157)||(1832902-1832982)
chr5 (106-168)||(37447741-37447803)
chr5 (76-157)||(40318368-40318448)
chr5 (76-157)||(41409092-41409172)
chr5 (76-157)||(17762794-17762875)
chr5 (117-182)||(41912704-41912768)
chr5 (95-167)||(17694034-17694106)
chr5 (84-157)||(22554745-22554820)
chr5 (62-130)||(12048740-12048810)
chr5 (98-157)||(21118353-21118412)
chr5 (99-153)||(54194-54248)
chr5 (76-130)||(17694197-17694253)
chr5 (60-166)||(21117522-21117630)
chr5 (101-138)||(22554269-22554306)
chr5 (83-156)||(3419811-3419886)
chr5 (98-142)||(22555121-22555165)
chr5 (94-166)||(40373794-40373866)
[»] chr3 (21 HSPs)
chr3 (98-168)||(1102328-1102398)
chr3 (117-199)||(3142476-3142558)
chr3 (63-168)||(30081519-30081626)
chr3 (97-159)||(7165500-7165562)
chr3 (100-168)||(8494242-8494310)
chr3 (97-157)||(20126209-20126269)
chr3 (84-168)||(4144981-4145067)
chr3 (78-157)||(31720862-31720941)
chr3 (76-168)||(37834445-37834538)
chr3 (103-168)||(4160961-4161026)
chr3 (60-140)||(495180-495262)
chr3 (84-168)||(4161146-4161232)
chr3 (60-168)||(12946498-12946607)
chr3 (84-156)||(13698423-13698497)
chr3 (110-169)||(27532317-27532376)
chr3 (76-151)||(494645-494722)
chr3 (76-168)||(20105992-20106083)
chr3 (83-136)||(20126414-20126467)
chr3 (93-168)||(3142158-3142234)
chr3 (94-126)||(3142380-3142412)
chr3 (101-157)||(25810419-25810475)
[»] chr8 (11 HSPs)
chr8 (95-168)||(34913635-34913708)
chr8 (86-130)||(25699301-25699345)
chr8 (94-168)||(13004036-13004108)
chr8 (62-168)||(42498982-42499089)
chr8 (60-168)||(36648068-36648177)
chr8 (88-152)||(6128112-6128176)
chr8 (101-199)||(25699650-25699748)
chr8 (100-157)||(34913778-34913835)
chr8 (63-168)||(25721726-25721833)
chr8 (76-157)||(36647432-36647515)
chr8 (117-169)||(36647938-36647990)
[»] scaffold1609 (3 HSPs)
scaffold1609 (83-151)||(584-654)
scaffold1609 (98-168)||(251-320)
scaffold1609 (84-142)||(406-466)
[»] scaffold0028 (1 HSPs)
scaffold0028 (63-157)||(77439-77534)
[»] scaffold0636 (1 HSPs)
scaffold0636 (60-168)||(1121-1231)
[»] scaffold0013 (1 HSPs)
scaffold0013 (62-157)||(51160-51256)


Alignment Details
Target: chr2 (Bit Score: 151; Significance: 9e-80; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 9e-80
Query Start/End: Original strand, 26 - 239
Target Start/End: Original strand, 41700845 - 41701065
Alignment:
Q  26 ggttgtgtattcaagagatgaatgtgaatttctttgcaaatatttgacgttgttttccatataaaatcaaaatatttaatagaaacactaaattaatgtt 125  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| ||||||||||||||| ||    
T  41700845 ggttgtatattcaagagatgaatgtgaatttctttgcaaatatttgacgttgttttgcatataaaataaaaatatttaataaaaacactaaattaat-tt 41700943  T
Q  126 gatatg-ttgaaaatagttatgagttttcaaaactttctcatatggatatatgaaaaattgattcttc------atatatataagcacattagagtgtga 218  Q
    |||||| |||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||      ||||||||||||||||||||||||||    
T  41700944 gatatgtttgaaaatagttatgagttttcaaaactttctcacatggatgtatgaaaaattgattcttcatatatatatatataagcacattagagtgtga 41701043  T
Q  219 cac-aatattgatcgaaacaaa 239  Q
    ||| ||||||||||||||||||    
T  41701044 cacaaatattgatcgaaacaaa 41701065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 245 - 386
Target Start/End: Original strand, 41701169 - 41701310
Alignment:
Q  245 ttctcatataaattatcannnnnnnccaatttcatttatccgatttctgcatgttatccttcggtaattacctccattcctttttggaattgtttcaaat 344  Q
    ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41701169 ttctcatataaattatcatttttttccaatttcatttatccgatttctgcatgttatccttcggtaattacctccattcctttttggaattgtttcaaat 41701268  T
Q  345 cagcgtttttctgtttaccatctcttgtgttgtttcatctct 386  Q
    |||||||| ||||||||||||||||||||||||||| |||||    
T  41701269 cagcgtttctctgtttaccatctcttgtgttgtttcttctct 41701310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 95 - 168
Target Start/End: Original strand, 24450600 - 24450673
Alignment:
Q  95 aaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    ||||||||||||||||||||| ||| |||||||||| || |||||||| |||||||||||||| ||| ||||||    
T  24450600 aaatatttaatagaaacactacattgatgttgatattttaaaaatagtcatgagttttcaaaattttatcatat 24450673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 60 - 142
Target Start/End: Original strand, 30930185 - 30930269
Alignment:
Q  60 tgcaaatatttgacgttgttttccatataaaatca--aaatatttaatagaaacactaaattaatgttgatatgttgaaaatagt 142  Q
    ||||||||||| | | |||||| |||||||||| |  ||||||||||||||||||||| |||||||||||||| || ||||||||    
T  30930185 tgcaaatatttaatggtgttttgcatataaaataataaaatatttaatagaaacactatattaatgttgatattttaaaaatagt 30930269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 76 - 168
Target Start/End: Complemental strand, 24548543 - 24548450
Alignment:
Q  76 tgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    |||||| |||||||||| ||||  ||||||||| |||||||| |||||| ||| ||| || ||||||||||||||||||||||| ||| ||||||    
T  24548543 tgttttgcatataaaataaaaagttatttaatataaacactacattaattttgttat-ttaaaaatagttatgagttttcaaaattttatcatat 24548450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 28144012 - 28143928
Alignment:
Q  76 tgttttccatataaaatcaaaa---tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    |||||| |||||||||| ||||   ||||||||||||| |||| |||||||||||| | ||||||||||| |||||||| |||||    
T  28144012 tgttttacatataaaataaaaaagatatttaatagaaaaactacattaatgttgattttttgaaaatagtgatgagtttccaaaa 28143928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 152
Target Start/End: Original strand, 45002376 - 45002433
Alignment:
Q  94 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagtttt 152  Q
    |||||||||||| |||||||||||||||||||| ||| ||  |||||||||||||||||    
T  45002376 aaaatatttaattgaaacactaaattaatgttggtat-tttcaaatagttatgagtttt 45002433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 3912528 - 3912568
Alignment:
Q  117 attaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    |||||||||||||| ||||||||||| ||||||||||||||    
T  3912528 attaatgttgatattttgaaaatagtaatgagttttcaaaa 3912568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 168
Target Start/End: Original strand, 24450980 - 24451074
Alignment:
Q  76 tgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    |||||| |||||||||| ||||  ||||||||||| | |||| |||  |||||| || |||||||||||||||| ||| ||||| ||| ||||||    
T  24450980 tgttttgcatataaaataaaaagttatttaatagacaaactacattggtgttgaaattttgaaaatagttatgactttccaaaattttatcatat 24451074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 630171 - 630224
Alignment:
Q  98 tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttt 151  Q
    ||||||| |||||||||| |||||||||||||  ||||||||||| | ||||||    
T  630171 tatttaagagaaacactatattaatgttgataatttgaaaatagtcacgagttt 630224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 157
Target Start/End: Original strand, 30930058 - 30930098
Alignment:
Q  117 attaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    |||||||||||||||||||||||||| || | |||||||||    
T  30930058 attaatgttgatatgttgaaaatagtcataaattttcaaaa 30930098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 32)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 168
Target Start/End: Complemental strand, 33536764 - 33536670
Alignment:
Q  76 tgttttccatataaaatcaaaatat--ttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    |||||| |||||||||| ||||| |  ||||||||||||||| |||||||||||||| ||||||||||| | |||||||||||| ||| ||||||    
T  33536764 tgttttgcatataaaataaaaatttaattaatagaaacactatattaatgttgatattttgaaaatagtcacgagttttcaaaattttatcatat 33536670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 60 - 157
Target Start/End: Original strand, 20561579 - 20561678
Alignment:
Q  60 tgcaaatatttgacgttgttttccatataaaatcaaa--atatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    ||||||||||| ||| |||||| |||||||||| | |  |||||||  ||||||||||||||||| ||||||| ||||||||||| ||||||||| ||||    
T  20561579 tgcaaatatttaacggtgttttgcatataaaataatagaatatttataagaaacactaaattaatattgatattttgaaaatagtcatgagtttttaaaa 20561678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 63 - 157
Target Start/End: Complemental strand, 2486473 - 2486377
Alignment:
Q  63 aaatatttgacgttgttttccatataaaatcaaaat--atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    |||||||| ||||| |||| ||| |||||| |||||  || |||||||||||||| |||||| || |||| || |||||||||||||||||||||||    
T  2486473 aaatatttaacgttattttgcatgtaaaattaaaatttatctaatagaaacactacattaattttaatattttaaaaatagttatgagttttcaaaa 2486377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 60 - 168
Target Start/End: Original strand, 21665628 - 21665737
Alignment:
Q  60 tgcaaatatttgacgttgttttccatataaaatcaaaa-tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaac 158  Q
    ||||||||||| | | ||||||  ||||||||| |||| |||||||||||||||||| ||| |||||||||| || |||||||| | ||||||| ||||     
T  21665628 tgcaaatatttaatggtgttttgtatataaaataaaaaatatttaatagaaacactatatttatgttgatattttaaaaatagtcacgagtttttaaaag 21665727  T
Q  159 tttctcatat 168  Q
    ||| ||||||    
T  21665728 tttatcatat 21665737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 97 - 157
Target Start/End: Complemental strand, 8237907 - 8237847
Alignment:
Q  97 atatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    |||||||| ||||||| || |||||||||||||| ||||||||||| ||||||||||||||    
T  8237907 atatttaagagaaacattatattaatgttgatattttgaaaatagtcatgagttttcaaaa 8237847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 44603916 - 44603988
Alignment:
Q  94 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcat 166  Q
    ||||||| ||||||||||||||||||||||||||||| || |||||||| | || ||||||||| ||| ||||    
T  44603916 aaaatatataatagaaacactaaattaatgttgatatttttaaaatagtcacgatttttcaaaattttatcat 44603988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 157
Target Start/End: Original strand, 1502224 - 1502287
Alignment:
Q  94 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    |||||| || ||||||||| |||||||||||| |||| ||||||||||| ||||||||||||||    
T  1502224 aaaataattgatagaaacaataaattaatgtttatattttgaaaatagtgatgagttttcaaaa 1502287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 98 - 157
Target Start/End: Complemental strand, 2739874 - 2739815
Alignment:
Q  98 tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    ||||||||||| |||||| |||||||||||||| ||||||||||| || |||||||||||    
T  2739874 tatttaatagacacactacattaatgttgatattttgaaaatagtcataagttttcaaaa 2739815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 87 - 157
Target Start/End: Complemental strand, 25480556 - 25480486
Alignment:
Q  87 taaaatcaaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    |||||| | |||||||||||||||||||| |||||||||||||| || |||||| | ||||||||| ||||    
T  25480556 taaaataataatatttaatagaaacactacattaatgttgatattttaaaaataatcatgagtttttaaaa 25480486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 97 - 157
Target Start/End: Original strand, 18869528 - 18869588
Alignment:
Q  97 atatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    |||||||||||||||| || |||||||||||||| ||||||||| | | ||||||||||||    
T  18869528 atatttaatagaaacagtatattaatgttgatattttgaaaataatcacgagttttcaaaa 18869588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 44606952 - 44607000
Alignment:
Q  94 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagt 142  Q
    ||||||| ||||||||||||||||||||||||||||| || ||||||||    
T  44606952 aaaatatctaatagaaacactaaattaatgttgatattttaaaaatagt 44607000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 18869739 - 18869806
Alignment:
Q  101 ttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    |||||| |||||| | ||||||||||||| |||||||| | |||||||||||||||| ||| ||||||    
T  18869739 ttaatacaaacacaacattaatgttgataggttgaaaacaattatgagttttcaaaattttatcatat 18869806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 99 - 157
Target Start/End: Complemental strand, 8669668 - 8669610
Alignment:
Q  99 atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    ||||||||||||||||| ||||||||| |||| ||||||| |||  |||||||||||||    
T  8669668 atttaatagaaacactacattaatgttcatattttgaaaacagtcgtgagttttcaaaa 8669610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 9669517 - 9669436
Alignment:
Q  78 ttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    |||| |||||||||| ||||  |||||||||||| ||||| || ||| ||||||| ||||||||||| ||||||||| ||||    
T  9669517 ttttacatataaaataaaaagttatttaatagaagcactacataaattttgatattttgaaaatagtcatgagtttttaaaa 9669436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 8669807 - 8669738
Alignment:
Q  99 atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    ||||||||||||||||| ||||||||| |||| ||||||| |||   |||||||||||| ||| ||||||    
T  8669807 atttaatagaaacactacattaatgttcatattttgaaaacagtcgcgagttttcaaaattttatcatat 8669738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 99 - 168
Target Start/End: Complemental strand, 8669946 - 8669877
Alignment:
Q  99 atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    ||||||||||||||||| ||||||||| |||| ||||||| |||   |||||||||||| ||| ||||||    
T  8669946 atttaatagaaacactacattaatgttcatattttgaaaacagtcgcgagttttcaaaattttatcatat 8669877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 29529714 - 29529633
Alignment:
Q  76 tgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    |||||| |||||||||| ||||  |||||||||||||||||| |||||| |||  || ||||||||||| ||||||||| ||||    
T  29529714 tgttttgcatataaaataaaaagttatttaatagaaacactacattaattttg--attttgaaaatagtgatgagtttttaaaa 29529633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 24865272 - 24865204
Alignment:
Q  100 tttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    ||||||| |||||||| |||||| ||||||| ||||||||||| |||| |||| |||| ||| ||||||    
T  24865272 tttaataaaaacactacattaattttgatattttgaaaatagtcatgaatttttaaaattttatcatat 24865204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 168
Target Start/End: Complemental strand, 33536961 - 33536854
Alignment:
Q  63 aaatatttgacgttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactt 160  Q
    |||||||| ||  ||||||  ||||||||| ||||  ||||||||||| ||| || ||| |||||||||| ||||||||||| | | |||||||||| ||    
T  33536961 aaatatttaacaatgttttaaatataaaataaaaaattatttaatagacacaatacattcatgttgatattttgaaaatagtcacgtgttttcaaaattt 33536862  T
Q  161 tctcatat 168  Q
    | ||||||    
T  33536861 tatcatat 33536854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 94 - 157
Target Start/End: Complemental strand, 3743185 - 3743122
Alignment:
Q  94 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    ||||||||||||||||||| || ||| ||||| |||| || |||||||| | ||||||||||||    
T  3743185 aaaatatttaatagaaacattatattgatgtttatattttaaaaatagtcacgagttttcaaaa 3743122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 168
Target Start/End: Complemental strand, 9669742 - 9669649
Alignment:
Q  76 tgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    |||||| |||||||||| |||   ||||||||||||||||||  ||||| || |||| ||||||||||| |||||||||||| | ||| ||||||    
T  9669742 tgttttgcatataaaataaaacgttatttaatagaaacactaccttaatttt-atattttgaaaatagtcatgagttttcaatattttatcatat 9669649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 9677130 - 9677059
Alignment:
Q  95 aaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcat 166  Q
    ||||||||| |||||||| || |||||||||||||| || ||||||||||| || ||| |||| ||| ||||    
T  9677130 aaatatttattagaaacattatattaatgttgatatttttaaaatagttattaggttttaaaattttatcat 9677059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 21666244 - 21666303
Alignment:
Q  98 tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    ||||||||||||| |||| |||||| || |||| ||||||||||| |||| |||||||||    
T  21666244 tatttaatagaaatactacattaattttaatattttgaaaatagtcatgaattttcaaaa 21666303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 84 - 168
Target Start/End: Complemental strand, 28645028 - 28644942
Alignment:
Q  84 atataaaatcaaaat--atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    ||||||||| |||||  |||||||||| |||||| ||||||||| |||| ||||||||||| | ||||||  |||| ||| ||||||    
T  28645028 atataaaataaaaatttatttaatagacacactacattaatgttaatattttgaaaatagtcacgagtttctaaaattttatcatat 28644942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 21666075 - 21666132
Alignment:
Q  111 cactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    ||||| ||||| ||| |||| ||||||||||| |||||||||||||| ||| ||||||    
T  21666075 cactacattaaggtttatattttgaaaatagtcatgagttttcaaaattttatcatat 21666132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 168
Target Start/End: Original strand, 24718992 - 24719084
Alignment:
Q  78 ttttccatataaaatcaaaatat--ttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    |||| |||||||||| ||||| |  |||||||||||||||  ||||||||||||| || |||||| | || | ||||||||| ||| ||||||    
T  24718992 ttttacatataaaataaaaatttaattaatagaaacactacgttaatgttgatattttaaaaatactcataaattttcaaaattttatcatat 24719084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 151
Target Start/End: Original strand, 24719213 - 24719266
Alignment:
Q  98 tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttt 151  Q
    ||||||||||| |||||| |||||| ||||||| ||||||||||| | ||||||    
T  24719213 tatttaatagacacactacattaatattgatattttgaaaatagtgacgagttt 24719266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 155
Target Start/End: Complemental strand, 28645352 - 28645295
Alignment:
Q  98 tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaa 155  Q
    |||||||||||||||||| ||| ||||| |||| || |||||| | ||||||||||||    
T  28645352 tatttaatagaaacactacattgatgtttatatattaaaaataatcatgagttttcaa 28645295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 168
Target Start/End: Complemental strand, 14657378 - 14657334
Alignment:
Q  124 ttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    |||| |||||||||||||| ||||||||||||||| || ||||||    
T  14657378 ttgacatgttgaaaatagtcatgagttttcaaaacattatcatat 14657334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 29239370 - 29239453
Alignment:
Q  76 tgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    |||||| ||| |||||| ||||  ||||||||| |||||||| ||| ||||||||   ||||||||||| ||| ||||||||||    
T  29239370 tgttttgcatgtaaaataaaaagttatttaataaaaacactacattgatgttgattatttgaaaatagtcatgcgttttcaaaa 29239453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 168
Target Start/End: Original strand, 35144569 - 35144643
Alignment:
Q  97 atatttaatagaaacactaaattaatgttg---atatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    |||||||||| |||| ||| ||||||||||   |||| || ||||| || |||||||||||||| ||||||||||    
T  35144569 atatttaatataaacgctatattaatgttgttgatattttaaaaattgtcatgagttttcaaaattttctcatat 35144643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 97 - 157
Target Start/End: Complemental strand, 42586274 - 42586214
Alignment:
Q  97 atatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    ||||||||||| ||||||| ||| |||||||||| ||||||||| | | |||||| |||||    
T  42586274 atatttaatagtaacactacattgatgttgatattttgaaaataatcacgagtttccaaaa 42586214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 25051198 - 25051272
Alignment:
Q  94 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    |||||||||||||||||||||| |||||| ||||||| |||||||||||||| ||||||| ||| ||| ||||||    
T  25051198 aaaatatttaatagaaacactatattaatattgatattttgaaaatagttataagttttccaaattttatcatat 25051272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 60 - 168
Target Start/End: Original strand, 25051331 - 25051440
Alignment:
Q  60 tgcaaatatttgacgttgttttccatataaaatca-aaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaac 158  Q
    |||||| |||| ||| |||| | |||||||||| | |||||||||||||||| | || |||||||||||||| || |||||| | ||||||||||||||     
T  25051331 tgcaaacatttaacggtgttatacatataaaataacaaatatttaatagaaataatatattaatgttgatattttaaaaataatcatgagttttcaaaat 25051430  T
Q  159 tttctcatat 168  Q
    ||| ||||||    
T  25051431 tttatcatat 25051440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 25051038 - 25051112
Alignment:
Q  94 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    ||||||||| ||||||||| || ||||||  |||||| |||||||| ||||||||||||||||| ||| ||||||    
T  25051038 aaaatatttgatagaaacattacattaatactgatattttgaaaatcgttatgagttttcaaaattttatcatat 25051112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 157
Target Start/End: Complemental strand, 37996767 - 37996671
Alignment:
Q  63 aaatatttgacgttgttttccatataaaatcaaaat--atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    |||||||| | | ||||||  ||||||||| |||||  |||||| | |||||||| |||||||||||||| || |||||||| ||||||||||||||    
T  37996767 aaatatttaatggtgttttaaatataaaatgaaaatttatttaacaaaaacactacattaatgttgatattttaaaaatagtcatgagttttcaaaa 37996671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 98 - 166
Target Start/End: Original strand, 11132268 - 11132336
Alignment:
Q  98 tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcat 166  Q
    ||||||| ||||||||||  || |||||||||| ||||||||||| |||||||||||||| ||| ||||    
T  11132268 tatttaaaagaaacactaccttgatgttgatattttgaaaatagtcatgagttttcaaaattttatcat 11132336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 157
Target Start/End: Original strand, 32668835 - 32668898
Alignment:
Q  94 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    ||||||||||||||||| |||| ||||||||||| || ||||||||||| |  |||||||||||    
T  32668835 aaaatatttaatagaaaaactacattaatgttgaaattttgaaaatagtcaatagttttcaaaa 32668898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 13540541 - 13540460
Alignment:
Q  78 ttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    |||| |||||||||| ||||  |||||||||||| ||||| || ||| ||||||| ||||||||||| ||||||||| ||||    
T  13540541 ttttacatataaaataaaaagttatttaatagaagcactacataaattttgatattttgaaaatagtcatgagtttttaaaa 13540460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 61 - 151
Target Start/End: Original strand, 19583368 - 19583457
Alignment:
Q  61 gcaaatatttgacgttgttttccatataaaatcaaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttt 151  Q
    |||||||||||||| |||||| ||| |||||  | | |||| ||||||||||||| |||| ||| ||||| || |||||||||||||||||    
T  19583368 gcaaatatttgacggtgttttgcatgtaaaaagata-tattcaatagaaacactacattactgtcgatattttaaaaatagttatgagttt 19583457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 149
Target Start/End: Complemental strand, 16177362 - 16177287
Alignment:
Q  76 tgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagt 149  Q
    |||||| | |||||||||||||  ||||||||| |||||||| |||||||||  ||| ||||||||||| ||||||    
T  16177362 tgttttgcttataaaatcaaaaattatttaataaaaacactacattaatgtttttattttgaaaatagtcatgagt 16177287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 76 - 168
Target Start/End: Original strand, 34852996 - 34853088
Alignment:
Q  76 tgttttccatataaaatcaaaat--atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    |||||| |||||||||| |||||  |||||||||||||||||||||||| |||  || |||||| |||| || |||||| |||| ||| ||||||    
T  34852996 tgttttgcatataaaataaaaatttatttaatagaaacactaaattaattttg--attttgaaagtagtcataagtttttaaaattttatcatat 34853088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 76 - 168
Target Start/End: Complemental strand, 13540766 - 13540673
Alignment:
Q  76 tgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    |||||| |||||||||| |||   ||||||||||||||||||  ||||| || |||| ||||||||||| |||||||||||| | ||| ||||||    
T  13540766 tgttttgcatataaaataaaacgttatttaatagaaacactaccttaatttt-atattttgaaaatagtcatgagttttcaatattttatcatat 13540673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 95 - 166
Target Start/End: Complemental strand, 13542074 - 13542003
Alignment:
Q  95 aaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcat 166  Q
    ||||||||| |||||||| || |||||||||||||| || ||||||||||| || ||| |||| ||| ||||    
T  13542074 aaatatttattagaaacattatattaatgttgatatttttaaaatagttattaggttttaaaattttatcat 13542003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 151
Target Start/End: Original strand, 19585334 - 19585384
Alignment:
Q  101 ttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttt 151  Q
    |||| |||||||||| |||||||||||||| ||||||||||| || |||||    
T  19585334 ttaacagaaacactacattaatgttgatattttgaaaatagtcattagttt 19585384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 168
Target Start/End: Complemental strand, 25447047 - 25446942
Alignment:
Q  63 aaatatttgacgttgttttccatataaaatcaaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttc 162  Q
    |||||||| ||| ||||||  ||||||  | ||||||||||||| | |||||| ||| |||||||||| || |||||| | ||||||||  |||| |||     
T  25447047 aaatatttaacggtgttttaaatataacttaaaaatatttaataaacacactatatttatgttgatattttaaaaataatcatgagtttctaaaatttta 25446948  T
Q  163 tcatat 168  Q
    ||||||    
T  25446947 tcatat 25446942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 10326111 - 10326159
Alignment:
Q  109 aacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    |||| ||||||||||||||||| || |||||||| | ||||||||||||    
T  10326111 aacattaaattaatgttgatatttttaaaatagtcaagagttttcaaaa 10326159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 6e-16; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 84 - 168
Target Start/End: Complemental strand, 43761433 - 43761347
Alignment:
Q  84 atataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    ||||||||| ||||  |||||||||||||||||| ||| |||||||||| ||||||||||||||||||||  |||| ||| ||||||    
T  43761433 atataaaataaaaagttatttaatagaaacactacattgatgttgatattttgaaaatagttatgagtttctaaaattttatcatat 43761347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 95 - 168
Target Start/End: Original strand, 3592626 - 3592699
Alignment:
Q  95 aaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    |||||||||||| |||||||| ||||||||| |||| ||||||||||| | |||||||||||| ||| ||||||    
T  3592626 aaatatttaataaaaacactacattaatgttaatattttgaaaatagtcacgagttttcaaaattttatcatat 3592699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 63 - 157
Target Start/End: Original strand, 34903612 - 34903708
Alignment:
Q  63 aaatatttgacgttgttttccatataaaatcaaaat--atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    |||||||| ||| ||||||  ||||||||| |||||  |||||||||| |||||| |||||||||||||| || ||||||| || |||||| |||||    
T  34903612 aaatatttaacggtgttttaaatataaaataaaaatttatttaatagacacactacattaatgttgatattttaaaaataggtaagagtttccaaaa 34903708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 101 - 157
Target Start/End: Complemental strand, 39313144 - 39313088
Alignment:
Q  101 ttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    ||||||||||||||  |||||| ||||||| ||||||||||||| ||||||||||||    
T  39313144 ttaatagaaacactgcattaatcttgatattttgaaaatagttacgagttttcaaaa 39313088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 3591774 - 3591840
Alignment:
Q  117 attaatgttgatatgttgaaaatagtt-atgagttttcaaaactttctcatatggatatatgaaaaa 182  Q
    ||||| |||||||| |||||||||||  ||||||||||||||||||||||||| || |||| |||||    
T  3591774 attaacgttgatatcttgaaaatagtccatgagttttcaaaactttctcatattgaaatattaaaaa 3591840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 11080645 - 11080707
Alignment:
Q  94 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaa 156  Q
    ||||||||||| |||||||||  |||||||||||||  ||||||||||| |||| ||||||||    
T  11080645 aaaatatttaaaagaaacactgtattaatgttgataatttgaaaatagtgatgatttttcaaa 11080707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 60 - 151
Target Start/End: Original strand, 15198750 - 15198843
Alignment:
Q  60 tgcaaatatttgacgttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttt 151  Q
    ||||||||||  ||| |||||| |||||||||| ||||  |||||||||||||||||| ||||||||  |||| |||| |||| | ||||||||    
T  15198750 tgcaaatattgaacggtgttttgcatataaaataaaaagttatttaatagaaacactatattaatgtatatattttgacaatattaatgagttt 15198843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 63 - 168
Target Start/End: Complemental strand, 16682169 - 16682063
Alignment:
Q  63 aaatatttgacgttgttttccatataaaat-caaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaacttt 161  Q
    |||||||| ||| ||||||  |||| |||| |||||||||| |||||||||||| |||| |||  |||| ||||||||||| ||||  |||||||| |||    
T  16682169 aaatatttaacggtgttttgaatattaaatacaaaatatttgatagaaacactacattactgtacatattttgaaaatagtcatgaactttcaaaatttt 16682070  T
Q  162 ctcatat 168  Q
     ||||||    
T  16682069 atcatat 16682063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 95 - 168
Target Start/End: Complemental strand, 15913373 - 15913300
Alignment:
Q  95 aaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    |||||||||||| || ||||| |||||||||||||| |||||| || || |||||||| |||| ||| ||||||    
T  15913373 aaatatttaataaaatcactatattaatgttgatattttgaaagtaattttgagtttttaaaattttatcatat 15913300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 84 - 166
Target Start/End: Complemental strand, 32035026 - 32034942
Alignment:
Q  84 atataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcat 166  Q
    ||||||||| ||||  |||||||||||| ||||| |||||| ||||||| || |||||||| | |||||||||||| ||| ||||    
T  32035026 atataaaatgaaaagttatttaatagaagcactacattaattttgatattttaaaaatagtcacgagttttcaaaattttatcat 32034942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 101 - 168
Target Start/End: Complemental strand, 16086967 - 16086900
Alignment:
Q  101 ttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    |||||||||||||||   |  ||||||||||||||||||||| | ||| |||||||||| ||||||||    
T  16086967 ttaatagaaacactaccattgtgttgatatgttgaaaatagtcacgagctttcaaaactatctcatat 16086900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 117 - 168
Target Start/End: Original strand, 39157547 - 39157598
Alignment:
Q  117 attaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    |||||| ||||||| |||||||||||||| ||||||||||| ||| ||||||    
T  39157547 attaattttgatattttgaaaatagttataagttttcaaaattttatcatat 39157598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 157
Target Start/End: Complemental strand, 39313032 - 39312935
Alignment:
Q  64 aatatttgacgttgttttccatataaaatcaaaat--atttaatagaaacactaaattaatgttg--atatgttgaaaatagttatgagttttcaaaa 157  Q
    ||||||| ||| ||||||  ||||||||| |||||  |||||||||| |||||| ||||||||||  || | ||||||||||| |||||||| |||||    
T  39313032 aatatttaacggtgttttaaatataaaataaaaatttatttaatagacacactacattaatgttgaaattttttgaaaatagtcatgagtttccaaaa 39312935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 15121826 - 15121887
Alignment:
Q  94 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaa 156  Q
    ||||||||||| |||||||||| |||| ||||||||| |||||||  |||| |||||||||||    
T  15121826 aaaatatttaacagaaacactatattattgttgatat-ttgaaaaatgttacgagttttcaaa 15121887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 156
Target Start/End: Original strand, 15146014 - 15146075
Alignment:
Q  94 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaa 156  Q
    ||||||||||| |||||||||| |||| ||||||||| |||||||  |||| |||||||||||    
T  15146014 aaaatatttaacagaaacactatattattgttgatat-ttgaaaaatgttacgagttttcaaa 15146075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 98 - 168
Target Start/End: Original strand, 46022945 - 46023015
Alignment:
Q  98 tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    ||||||| |||||||||| |||||||||||||  ||||||||||| | |||||| || || ||| ||||||    
T  46022945 tatttaagagaaacactacattaatgttgataatttgaaaatagtcacgagtttccacaattttatcatat 46023015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 78 - 140
Target Start/End: Original strand, 3591906 - 3591970
Alignment:
Q  78 ttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaata 140  Q
    |||| |||||||||| ||||  |||||||||||||||| | |||||||||||||| || ||||||    
T  3591906 ttttgcatataaaatgaaaaattatttaatagaaacacaacattaatgttgatatcttaaaaata 3591970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 151
Target Start/End: Complemental strand, 48994950 - 48994897
Alignment:
Q  98 tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttt 151  Q
    ||||||| |||||||||| |||||||||||||  ||||||||||| | ||||||    
T  48994950 tatttaagagaaacactacattaatgttgataatttgaaaatagtcacgagttt 48994897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 168
Target Start/End: Original strand, 15114838 - 15114933
Alignment:
Q  75 ttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    ||||||| |||||||||| ||||  |||||| ||||||||||| | | ||||| | || |||||||||||  ||||||||||| | ||| ||||||    
T  15114838 ttgttttgcatataaaataaaaagttatttattagaaacactacaatgatgtttacattttgaaaatagtcttgagttttcaataatttatcatat 15114933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 168
Target Start/End: Original strand, 15123048 - 15123143
Alignment:
Q  75 ttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    ||||||| |||||||||| || |  |||||| ||||||||||| | | ||||| | || ||||||||||| |||||||||||| | ||| ||||||    
T  15123048 ttgttttgcatataaaataaacagttatttattagaaacactacaatgatgtttacatcttgaaaatagtcatgagttttcaataatttatcatat 15123143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 168
Target Start/End: Original strand, 15139354 - 15139449
Alignment:
Q  75 ttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    ||||||| |||||||||| ||||  |||||| ||||||||||| | | ||||| | || |||||||||||  ||||||||||| | ||| ||||||    
T  15139354 ttgttttgcatataaaataaaaagttatttattagaaacactacaatgatgtttacattttgaaaatagtcttgagttttcaataatttatcatat 15139449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 75 - 168
Target Start/End: Original strand, 15147236 - 15147331
Alignment:
Q  75 ttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    ||||||| |||||||||| || |  |||||| ||||||||||| | | ||||| | || ||||||||||| |||||||||||| | ||| ||||||    
T  15147236 ttgttttgcatataaaataaacagttatttattagaaacactacaatgatgtttacatcttgaaaatagtcatgagttttcaataatttatcatat 15147331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 64 - 157
Target Start/End: Complemental strand, 31795038 - 31794944
Alignment:
Q  64 aatatttgacgttgttttccatataaaatcaaaa-tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    ||||||| ||| |||||| |||||||||| |||| ||||||||| || ||||| |||||||||||||| ||||||||||| | ||||||| ||||    
T  31795038 aatatttaacggtgttttacatataaaataaaaaatatttaataaaagcactacattaatgttgatatattgaaaatagtcacgagtttttaaaa 31794944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 11959934 - 11959866
Alignment:
Q  100 tttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    |||||||||||||||| |||||||||||||| || |||||| | |||||||||||||| ||| ||||||    
T  11959934 tttaatagaaacactacattaatgttgatattttaaaaataataatgagttttcaaaaatttatcatat 11959866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 63 - 151
Target Start/End: Original strand, 5089615 - 5089705
Alignment:
Q  63 aaatatttgacgttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttt 151  Q
    |||||||  ||| |||||| |||||||| | ||||  |||||||||||||||||| |||||||||||||| ||||||||| | ||||||||    
T  5089615 aaatattgaacggtgttttgcatataaagtaaaaagttatttaatagaaacactacattaatgttgatattttgaaaataatcatgagttt 5089705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 94 - 181
Target Start/End: Complemental strand, 11854295 - 11854208
Alignment:
Q  94 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatatggatatatgaaaa 181  Q
    ||||||||||| |||||||||| ||||| |||||| | || |||||| | |||||||||||||| ||| |||||| |||| |||||||    
T  11854295 aaaatatttaacagaaacactacattaaagttgatcttttaaaaataataatgagttttcaaaattttatcatatcgatacatgaaaa 11854208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 84 - 140
Target Start/End: Original strand, 15555445 - 15555501
Alignment:
Q  84 atataaaatcaaaatatttaatagaaacactaaattaatgttgatatgttgaaaata 140  Q
    ||||||||| |||  ||||||||||||||||| |||||||||||||| |||||||||    
T  15555445 atataaaataaaataatttaatagaaacactatattaatgttgatattttgaaaata 15555501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 2999472 - 2999539
Alignment:
Q  101 ttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    ||||||||||||||| ||| |||||||||| ||||||||||| |||| |||| |||| ||| ||||||    
T  2999472 ttaatagaaacactacattgatgttgatattttgaaaatagtcatgactttttaaaattttatcatat 2999539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 157
Target Start/End: Original strand, 15554430 - 15554493
Alignment:
Q  94 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    ||||||||||||||||| |||| |||||||||||||| ||||||||  | ||||||||| ||||    
T  15554430 aaaatatttaatagaaatactatattaatgttgatattttgaaaatgatcatgagtttttaaaa 15554493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 63 - 176
Target Start/End: Original strand, 15556434 - 15556547
Alignment:
Q  63 aaatatttgacgttgttttccatataaaatcaaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttc 162  Q
    |||||||| ||| | |||| | |||||||| |||| ||||   ||||| |||| ||||||||||||||||| |||| | | ||||||||| |||| |||     
T  15556434 aaatatttaacggtattttacttataaaataaaaaaatttctcagaaaaactacattaatgttgatatgttaaaaacaatcatgagttttaaaaaattta 15556533  T
Q  163 tcatatggatatat 176  Q
    |||||| |||||||    
T  15556534 tcatatcgatatat 15556547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 103 - 162
Target Start/End: Original strand, 15554776 - 15554836
Alignment:
Q  103 aatagaaacactaaattaatgttgatatgtt-gaaaatagttatgagttttcaaaactttc 162  Q
    ||||||||||||| |||||||||||||||||  |||||| | |||| ||||||||||||||    
T  15554776 aatagaaacactacattaatgttgatatgttaaaaaataataatgacttttcaaaactttc 15554836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 142
Target Start/End: Original strand, 15555126 - 15555174
Alignment:
Q  94 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagt 142  Q
    |||||| |||||| |||||||| |||||||||||||| |||||||||||    
T  15555126 aaaatacttaataaaaacactacattaatgttgatattttgaaaatagt 15555174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 60 - 147
Target Start/End: Complemental strand, 31794860 - 31794770
Alignment:
Q  60 tgcaaatatttgacgttgttttccatataaaatca---aaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatga 147  Q
    |||||||| || ||||||||||||||||||||| |   ||| | ||||| ||||||||| |||||||| ||||| ||||| ||||| ||||    
T  31794860 tgcaaatagttaacgttgttttccatataaaataaaataaaaaattaattgaaacactacattaatgtcgatattttgaatatagtcatga 31794770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 100 - 155
Target Start/End: Original strand, 15555933 - 15555988
Alignment:
Q  100 tttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaa 155  Q
    |||||||||||||||| |||| ||||||||| || |||||||||| ||||| ||||    
T  15555933 tttaatagaaacactacattagtgttgatattttcaaaatagttacgagttctcaa 15555988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 147
Target Start/End: Original strand, 15556292 - 15556338
Alignment:
Q  101 ttaatagaaacactaaattaatgttgatatgttgaaaatagttatga 147  Q
    ||||||||||||| | |||||||||||||| ||||||||||| ||||    
T  15556292 ttaatagaaacacaacattaatgttgatattttgaaaatagtcatga 15556338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 15558795 - 15558868
Alignment:
Q  94 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    |||||||||| || ||||||||||||||||||||||| || |||| ||| |||| ||||| ||| ||| ||||||    
T  15558795 aaaatattta-tataaacactaaattaatgttgatattttaaaaacagtcatgaattttctaaattttatcatat 15558868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 157
Target Start/End: Original strand, 4979870 - 4979964
Alignment:
Q  62 caaatatttgacgttgttttccatataaaatcaaaa-tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    ||||||||| |||| |||||  ||||||||| |||| ||||||||| ||| | || |||||||| ||||| ||||||||||| | ||||||||||||    
T  4979870 caaatatttaacgt-gttttgtatataaaataaaaaatatttaataaaaaaa-tacattaatgtcgatattttgaaaatagtcacgagttttcaaaa 4979964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 7566188 - 7566121
Alignment:
Q  98 tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    |||||||||||||||||| |||||| ||   || ||||||||||| ||||||||| |||| ||| ||||||    
T  7566188 tatttaatagaaacactacattaatttt---attttgaaaatagtcatgagtttttaaaattttatcatat 7566121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 31480956 - 31481039
Alignment:
Q  76 tgttttccatataaaat--caaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    |||||| ||||||||||  |||| ||||||||||||||| || || ||| || |||| | ||||||||| | ||||||||||||    
T  31480956 tgttttgcatataaaataacaaagtatttaatagaaacattacatcaatattaatatttagaaaatagtaacgagttttcaaaa 31481039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 118 - 168
Target Start/End: Original strand, 40373650 - 40373700
Alignment:
Q  118 ttaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    ||||||||||||||||||||||||| || ||||||||||||||||||||||    
T  40373650 ttaatgttgatatgttgaaaatagtcataagttttcaaaactttctcatat 40373700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 60 - 147
Target Start/End: Original strand, 41912815 - 41912904
Alignment:
Q  60 tgcaaatatttgacgttgttttccatataaaat--caaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatga 147  Q
    ||||||||||| ||| |||||| ||||||||||  ||| ||||||| || |||||||| |||||||||||||| ||||||||||| ||||    
T  41912815 tgcaaatatttaacggtgttttgcatataaaatgacaacatatttattaaaaacactatattaatgttgatattttgaaaatagtcatga 41912904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 26657521 - 26657605
Alignment:
Q  60 tgcaaatatttgacgttgttttccatataaaatcaaaat-atttaatagaaacactaaattaatgttgatatgttgaaaatagtt 143  Q
    ||||||||||| ||| ||||||  ||||||||| ||||| ||||||||||||||||| || |||||||||||  |||||||||||    
T  26657521 tgcaaatatttaacggtgttttaaatataaaataaaaattatttaatagaaacactacatgaatgttgatattctgaaaatagtt 26657605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 60 - 143
Target Start/End: Original strand, 26929109 - 26929193
Alignment:
Q  60 tgcaaatatttgacgttgttttccatataaaatcaaaat-atttaatagaaacactaaattaatgttgatatgttgaaaatagtt 143  Q
    ||||||||||| ||| ||||||  ||||||||| ||||| ||||||||||||||||| || |||||||||||  |||||||||||    
T  26929109 tgcaaatatttaacggtgttttaaatataaaataaaaattatttaatagaaacactacatgaatgttgatattctgaaaatagtt 26929193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 60 - 155
Target Start/End: Original strand, 3419995 - 3420091
Alignment:
Q  60 tgcaaatatttgacgttgttttccatataaa-atcaaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaa 155  Q
    ||||||||||| ||| |||||| |||| ||| | |||||||||||||| ||||| || | |||||||||||| ||||||||||| || | |||||||    
T  3419995 tgcaaatatttaacggtgttttgcatacaaataacaaaatatttaatacaaacattatactaatgttgatattttgaaaatagtcataaattttcaa 3420091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 101 - 168
Target Start/End: Original strand, 17762113 - 17762180
Alignment:
Q  101 ttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    |||||||||| || | |||||||||||||| ||||||||||| | |||||||||||| ||| ||||||    
T  17762113 ttaatagaaagacaacattaatgttgatattttgaaaatagtcacgagttttcaaaattttatcatat 17762180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 1832902 - 1832982
Alignment:
Q  76 tgttttccatataaaatcaaaa-tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    ||||||||||||||||| |||| |||||||||  |||||| | ||| ||||||||| || |||||||||||||||||||||||    
T  1832902 tgttttccatataaaataaaaaatatttaataagaacactta-ttagtgttgatatttt-aaaatagttatgagttttcaaaa 1832982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 106 - 168
Target Start/End: Complemental strand, 37447803 - 37447741
Alignment:
Q  106 agaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    |||||||||| |||||||||||||| |||||||| || |||||| ||||||| ||| ||||||    
T  37447803 agaaacactacattaatgttgatattttgaaaatggtcatgagtgttcaaaattttatcatat 37447741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 40318368 - 40318448
Alignment:
Q  76 tgttttccatataaaatcaaaa-tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    ||||||||||||||||| |||| |||||||||  |||||| | ||| ||||||||| || |||||||||||||||||||||||    
T  40318368 tgttttccatataaaataaaaaatatttaataagaacactta-ttagtgttgatatttt-aaaatagttatgagttttcaaaa 40318448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 41409172 - 41409092
Alignment:
Q  76 tgttttccatataaaatcaaaa-tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    ||||||||||||||||| |||| |||||||||  |||||| | ||| ||||||||| || |||||||||||||||||||||||    
T  41409172 tgttttccatataaaataaaaaatatttaataagaacactta-ttagtgttgatatttt-aaaatagttatgagttttcaaaa 41409092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 76 - 157
Target Start/End: Original strand, 17762794 - 17762875
Alignment:
Q  76 tgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    |||||| |||||||||| ||||  |||||||||||||||||| |||||| |||  || ||||||||| | ||||||||||||||    
T  17762794 tgttttgcatataaaataaaaagttatttaatagaaacactacattaattttg--attttgaaaatactcatgagttttcaaaa 17762875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 117 - 182
Target Start/End: Original strand, 41912704 - 41912768
Alignment:
Q  117 attaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatatggatatatgaaaaa 182  Q
    ||||||||| |||||||||||||||| |  |||||||||||||||||||||| |||| || |||||    
T  41912704 attaatgtt-atatgttgaaaatagtcacaagttttcaaaactttctcatatcgatacattaaaaa 41912768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 95 - 167
Target Start/End: Original strand, 17694034 - 17694106
Alignment:
Q  95 aaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcata 167  Q
    ||||||||||||| ||||||| | |||||||||||| || |||||| ||| ||||||| |||| ||| |||||    
T  17694034 aaatatttaatagcaacactatactaatgttgatattttaaaaataattacgagtttttaaaattttatcata 17694106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 84 - 157
Target Start/End: Original strand, 22554745 - 22554820
Alignment:
Q  84 atataaaatcaaaat--atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    ||||||||| |||||  |||||||||| |||||| |||||||||||||| || |||||||| | |||||| |||||    
T  22554745 atataaaataaaaatttatttaatagacacactacattaatgttgatattttaaaaatagtcacgagtttccaaaa 22554820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 62 - 130
Target Start/End: Complemental strand, 12048810 - 12048740
Alignment:
Q  62 caaatatttgacgttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatat 130  Q
    ||||||||| ||| ||||||  ||||||||| ||||  |||||||||||||||||| ||| ||||||||||    
T  12048810 caaatatttaacggtgttttaaatataaaataaaaagttatttaatagaaacactacattgatgttgatat 12048740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 98 - 157
Target Start/End: Original strand, 21118353 - 21118412
Alignment:
Q  98 tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    ||||||||||||||| ||||||||| ||||||| ||||||||| | || |||||| ||||    
T  21118353 tatttaatagaaacattaaattaattttgatattttgaaaataatcattagttttaaaaa 21118412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 54194 - 54248
Alignment:
Q  99 atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttc 153  Q
    ||||||||||||||||||||||||||| |||| || ||||||  ||| |||||||    
T  54194 atttaatagaaacactaaattaatgttaatattttaaaaatatctataagttttc 54248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 130
Target Start/End: Original strand, 17694197 - 17694253
Alignment:
Q  76 tgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatat 130  Q
    |||||| |||||||||| ||||  ||||||||| |||||||| ||||||||||||||    
T  17694197 tgttttacatataaaataaaaaaatatttaatataaacactacattaatgttgatat 17694253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 166
Target Start/End: Original strand, 21117522 - 21117630
Alignment:
Q  60 tgcaaatatttgacgttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    |||||||||||  || ||||||  ||||||||| |||   |||||||| |||| |||| ||| |||||||||| |||||||||||  |||||||| ||||    
T  21117522 tgcaaatatttatcggtgttttaaatataaaataaaatgttatttaattgaaatactacattgatgttgatattttgaaaatagtcgtgagtttttaaaa 21117621  T
Q  158 ctttctcat 166  Q
     ||| ||||    
T  21117622 ttttatcat 21117630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 138
Target Start/End: Original strand, 22554269 - 22554306
Alignment:
Q  101 ttaatagaaacactaaattaatgttgatatgttgaaaa 138  Q
    ||||||||||||||| |||||||||||||| |||||||    
T  22554269 ttaatagaaacactacattaatgttgatattttgaaaa 22554306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 3419811 - 3419886
Alignment:
Q  83 catataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaa 156  Q
    |||||||||| ||||  ||||||||||||||| |  |||||| ||||||| || |||||||| |||| ||||||||    
T  3419811 catataaaataaaaagctatttaatagaaacattgcattaatattgatattttaaaaatagtcatgaattttcaaa 3419886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 142
Target Start/End: Original strand, 22555121 - 22555165
Alignment:
Q  98 tatttaatagaaacactaaattaatgttgatatgttgaaaatagt 142  Q
    ||||||||||| |||||| |||||||||||||| || ||||||||    
T  22555121 tatttaatagacacactacattaatgttgatattttaaaaatagt 22555165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 166
Target Start/End: Original strand, 40373794 - 40373866
Alignment:
Q  94 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcat 166  Q
    ||||||||||||| |||| | | |||||| ||||||| |||||||||   | |||||||||||||||| ||||    
T  40373794 aaaatatttaatataaactcgacattaattttgatattttgaaaataacgacgagttttcaaaactttatcat 40373866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 98 - 168
Target Start/End: Complemental strand, 1102398 - 1102328
Alignment:
Q  98 tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    ||||||||||| |||||| |||||||||||||| ||||||||||||||||||||  |||| ||| ||||||    
T  1102398 tatttaatagacacactacattaatgttgatattttgaaaatagttatgagtttctaaaattttatcatat 1102328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 199
Target Start/End: Complemental strand, 3142558 - 3142476
Alignment:
Q  117 attaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatatggatatatgaaaaattgattcttcatatata 199  Q
    ||||| |||||||||||||||||||| ||||||||||||||| |||||| || |||| || |||||||| |||  ||||||||    
T  3142558 attaacgttgatatgttgaaaatagtcatgagttttcaaaacattctcagatcgatacataaaaaattgcttccccatatata 3142476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 63 - 168
Target Start/End: Original strand, 30081519 - 30081626
Alignment:
Q  63 aaatatttgacgttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactt 160  Q
    |||||||| ||| ||||||  ||||||||| ||||  ||||||||| |||||| | |||||||||||||| || |||||||| |||||||| ||||| ||    
T  30081519 aaatatttaacggtgttttaaatataaaataaaaagttatttaatataaacacgacattaatgttgatattttcaaaatagtcatgagtttccaaaattt 30081618  T
Q  161 tctcatat 168  Q
    | ||||||    
T  30081619 tatcatat 30081626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 97 - 159
Target Start/End: Original strand, 7165500 - 7165562
Alignment:
Q  97 atatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaact 159  Q
    ||||||||||||||||||| |||||||| |||||  | ||||||||||| |||||||||||||    
T  7165500 atatttaatagaaacactacattaatgtagatattataaaaatagttattagttttcaaaact 7165562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 100 - 168
Target Start/End: Complemental strand, 8494310 - 8494242
Alignment:
Q  100 tttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    ||||||||||| |||| ||||||||| |||| || ||||||||||| ||||||| ||||||| ||||||    
T  8494310 tttaatagaaatactacattaatgtttatattttaaaaatagttattagttttcgaaactttatcatat 8494242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 97 - 157
Target Start/End: Complemental strand, 20126269 - 20126209
Alignment:
Q  97 atatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    ||||||||||||||||||| ||| |||||||||| ||||||||||| |||| |||| ||||    
T  20126269 atatttaatagaaacactacattgatgttgatattttgaaaatagtcatgaatttttaaaa 20126209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 84 - 168
Target Start/End: Complemental strand, 4145067 - 4144981
Alignment:
Q  84 atataaaatcaaaat--atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    ||||||||| |||||  ||| ||||||||||||| ||||||||| |||| ||||||||| | ||||||||||| || ||| ||||||    
T  4145067 atataaaataaaaatttattcaatagaaacactatattaatgtttatattttgaaaatattaatgagttttcacaattttatcatat 4144981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 78 - 157
Target Start/End: Complemental strand, 31720941 - 31720862
Alignment:
Q  78 ttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    |||| |||||||||| ||||  |||||||||||||||||| |||||| |||  || ||||||||||| ||||||||||||||    
T  31720941 ttttgcatataaaataaaaagttatttaatagaaacactacattaattttg--attttgaaaatagtgatgagttttcaaaa 31720862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 168
Target Start/End: Complemental strand, 37834538 - 37834445
Alignment:
Q  76 tgttttccatataaaatcaaaat--atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    |||||| || ||||||| |||||  |||||||||||| |||| |||||| ||||||| |||||||||||  ||||||||||||| ||| ||||||    
T  37834538 tgttttgcaaataaaataaaaatttatttaatagaaaaactacattaattttgatat-ttgaaaatagtcttgagttttcaaaattttatcatat 37834445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 103 - 168
Target Start/End: Complemental strand, 4161026 - 4160961
Alignment:
Q  103 aatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    ||||||||||||| ||||||||| |||| ||||||||| | ||||||||||| || ||| ||||||    
T  4161026 aatagaaacactatattaatgtttatattttgaaaatattaatgagttttcacaattttatcatat 4160961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 140
Target Start/End: Complemental strand, 495262 - 495180
Alignment:
Q  60 tgcaaatatttgacgttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaata 140  Q
    ||||||||||| ||| | ||||  ||||||||| ||||  |||||||||||||||||| ||| ||||||||||  ||||||||    
T  495262 tgcaaatatttaacggtattttaaatataaaataaaaagttatttaatagaaacactacattgatgttgatattctgaaaata 495180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 84 - 168
Target Start/End: Complemental strand, 4161232 - 4161146
Alignment:
Q  84 atataaaatcaaaat--atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    ||||||||| |||||  ||| ||||||||||||| ||||||||| || | ||||||||| | ||||||||||| || ||| ||||||    
T  4161232 atataaaataaaaatttattcaatagaaacactatattaatgtttatcttttgaaaatattaatgagttttcacaattttatcatat 4161146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 168
Target Start/End: Complemental strand, 12946607 - 12946498
Alignment:
Q  60 tgcaaatatttgacgttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    ||||||||||| | | ||||||| ||||||||| ||||  ||||||||||||| |||| | |||| ||||||| ||||||||| | ||| ||||| ||||    
T  12946607 tgcaaatatttaaaggtgttttc-atataaaattaaaacttatttaatagaaatactacaataattttgatattttgaaaataataatgtgtttttaaaa 12946509  T
Q  158 ctttctcatat 168  Q
     ||| ||||||    
T  12946508 ttttatcatat 12946498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 84 - 156
Target Start/End: Original strand, 13698423 - 13698497
Alignment:
Q  84 atataaaatcaaaat--atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaa 156  Q
    ||||||||| |||||  |||||||||| | || | |||||||||||||| |||||||| || |||||||||||||    
T  13698423 atataaaatgaaaattaatttaatagacaaacaacattaatgttgatattttgaaaattgtcatgagttttcaaa 13698497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 110 - 169
Target Start/End: Original strand, 27532317 - 27532376
Alignment:
Q  110 acactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatatg 169  Q
    |||||| |||||||||||||| || |||||| | |||||||||||||| ||| |||||||    
T  27532317 acactatattaatgttgatattttaaaaataatcatgagttttcaaaattttatcatatg 27532376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 494722 - 494645
Alignment:
Q  76 tgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttt 151  Q
    |||||| |||||||||| ||||  |||| ||||||||||||| ||||||||| |||| |||| |||| | ||||||||    
T  494722 tgttttgcatataaaataaaaagttattcaatagaaacactatattaatgtttatattttgacaatattaatgagttt 494645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 76 - 168
Target Start/End: Original strand, 20105992 - 20106083
Alignment:
Q  76 tgttttccatataaaatcaaaat-atttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    |||||| |||||||||| ||||| ||||||||  |||||| | ||||||||||||| ||| ||||||| || ||||||||||| ||| ||||||    
T  20105992 tgtttttcatataaaataaaaattatttaataagaacactta-ttaatgttgatattttg-aaatagtcataagttttcaaaattttatcatat 20106083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 83 - 136
Target Start/End: Complemental strand, 20126467 - 20126414
Alignment:
Q  83 catataaaatcaaaatatttaatagaaacactaaattaatgttgatatgttgaa 136  Q
    |||||||||| ||||||||||||| |||||||| ||| |||| ||||| |||||    
T  20126467 catataaaataaaaatatttaataaaaacactacattgatgtcgatattttgaa 20126414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 168
Target Start/End: Complemental strand, 3142234 - 3142158
Alignment:
Q  93 caaaatatttaatagaaacactaaattaatg-ttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    ||||||||||||||||||  ||| |||||   ||||||| ||||||||||| | |||||||||||| ||| ||||||    
T  3142234 caaaatatttaatagaaatgctacattaaacattgatattttgaaaatagtcacgagttttcaaaattttatcatat 3142158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 94 - 126
Target Start/End: Complemental strand, 3142412 - 3142380
Alignment:
Q  94 aaaatatttaatagaaacactaaattaatgttg 126  Q
    |||||||||||||||||||||| ||||||||||    
T  3142412 aaaatatttaatagaaacactacattaatgttg 3142380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 101 - 157
Target Start/End: Original strand, 25810419 - 25810475
Alignment:
Q  101 ttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    |||||||||||| |  |||||||||||||| ||||||||||| | ||||||| ||||    
T  25810419 ttaatagaaacattgcattaatgttgatattttgaaaatagtaacgagtttttaaaa 25810475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 95 - 168
Target Start/End: Complemental strand, 34913708 - 34913635
Alignment:
Q  95 aaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    |||||||||||||||||| ||||||||||||||||| ||| |||||||  || ||||| |||| ||| ||||||    
T  34913708 aaatatttaatagaaacaataaattaatgttgatattttgtaaatagtcttgggtttttaaaattttatcatat 34913635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 86 - 130
Target Start/End: Original strand, 25699301 - 25699345
Alignment:
Q  86 ataaaatcaaaatatttaatagaaacactaaattaatgttgatat 130  Q
    ||||||| |||||||||||||||||||||| ||||||||||||||    
T  25699301 ataaaataaaaatatttaatagaaacactatattaatgttgatat 25699345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 13004036 - 13004108
Alignment:
Q  94 aaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    ||||||||||||||||||| || ||||||  ||||||| |||||||| ||||||||||| |||| ||| ||||||    
T  13004036 aaaatatttaatagaaacattatattaat--tgatatgctgaaaatacttatgagtttttaaaattttatcatat 13004108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 62 - 168
Target Start/End: Complemental strand, 42499089 - 42498982
Alignment:
Q  62 caaatatttgacgttgttttccatataaaatcaaaa-tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactt 160  Q
    ||||||||| ||| | ||||  ||||||||| |||| |||||||||||| || || ||||||| |||||| ||||||||||||| || |||| |||| ||    
T  42499089 caaatattttacgatattttgtatataaaataaaaaatatttaatagaatcattatattaatgatgatattttgaaaatagttacgaatttttaaaattt 42498990  T
Q  161 tctcatat 168  Q
    | ||||||    
T  42498989 tatcatat 42498982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 60 - 168
Target Start/End: Complemental strand, 36648177 - 36648068
Alignment:
Q  60 tgcaaatatttgacgttgttttccatataaaatcaa-aatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaac 158  Q
    ||||||||||  ||| |||||| ||| |||||| |  |||||||||||||||  ||| |||||||||||||| |||||||||||  | |||||| ||||     
T  36648177 tgcaaatattcaacggtgttttgcatgtaaaataaggaatatttaatagaaattctatattaatgttgatattttgaaaatagtcgtaagtttttaaaat 36648078  T
Q  159 tttctcatat 168  Q
    ||| ||||||    
T  36648077 tttatcatat 36648068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 6128176 - 6128112
Alignment:
Q  88 aaaatcaaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagtttt 152  Q
    |||| |||||||||||||| |||||||| | | |||||||| | ||||||||||| |||||||||    
T  6128176 aaaaacaaaatatttaataaaaacactacactgatgttgatgttttgaaaatagtcatgagtttt 6128112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 199
Target Start/End: Original strand, 25699650 - 25699748
Alignment:
Q  101 ttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatatggatatatgaaaaattgattcttcatatata 199  Q
    ||||||||||||||| ||||||| ||  ||| | |||||||| || |||||| |||| ||| |||||| |||| || |||||||| |||| || |||||    
T  25699650 ttaatagaaacactacattaatgatggcatgataaaaatagtcataagtttttaaaattttatcatatcgatacataaaaaattgcttctccagatata 25699748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 100 - 157
Target Start/End: Complemental strand, 34913835 - 34913778
Alignment:
Q  100 tttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    ||||||||| ||| ||||||||| |||||||  ||||||||||| ||||| |||||||    
T  34913835 tttaatagagacattaaattaatattgatattctgaaaatagttgtgagtgttcaaaa 34913778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 168
Target Start/End: Original strand, 25721726 - 25721833
Alignment:
Q  63 aaatatttgacgttgttttccatataaaat--caaaatatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactt 160  Q
    |||||| | ||| |||||| ||||| ||||  |||||||||||||  |||| ||  |||||||||||||| ||||||||||| || | ||||||| | ||    
T  25721726 aaatatataacggtgttttacatatgaaataacaaaatatttaatgtaaactcttcattaatgttgatattttgaaaatagtaatcaattttcaacattt 25721825  T
Q  161 tctcatat 168  Q
    | ||||||    
T  25721826 tatcatat 25721833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 36647515 - 36647432
Alignment:
Q  76 tgttttccatataaaatcaaaatattt--aatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    |||||| |||||||||| ||||||| |  ||||||||||  | ||||||||| |||| | |||||||||||| |||||| ||||    
T  36647515 tgttttgcatataaaataaaaatatattaaatagaaacatgacattaatgtttatatttcgaaaatagttataagttttaaaaa 36647432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 36647990 - 36647938
Alignment:
Q  117 attaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatatg 169  Q
    |||||||||||||| |||||||||||| | | ||||||||| ||| |||||||    
T  36647990 attaatgttgatattttgaaaatagttgttaattttcaaaattttatcatatg 36647938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1609 (Bit Score: 36; Significance: 0.00000000004; HSPs: 3)
Name: scaffold1609
Description:

Target: scaffold1609; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 83 - 151
Target Start/End: Original strand, 584 - 654
Alignment:
Q  83 catataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttt 151  Q
    |||||||||| ||||  |||||||||||||||||| ||||||||| |||| ||||||||||| || |||||    
T  584 catataaaataaaaagttatttaatagaaacactacattaatgtttatattttgaaaatagtcattagttt 654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1609; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 98 - 168
Target Start/End: Original strand, 251 - 320
Alignment:
Q  98 tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaactttctcatat 168  Q
    |||||||||||||||||| ||||||||||| |  ||||||||||| | |||||||||||| ||| ||||||    
T  251 tatttaatagaaacactatattaatgttga-agtttgaaaatagtcacgagttttcaaaattttatcatat 320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1609; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 84 - 142
Target Start/End: Original strand, 406 - 466
Alignment:
Q  84 atataaaatcaaaat--atttaatagaaacactaaattaatgttgatatgttgaaaatagt 142  Q
    ||||||||| |||||  ||| |||||| |||||| |||||||||||||| |||||||||||    
T  406 atataaaataaaaatttattcaatagacacactacattaatgttgatattttgaaaatagt 466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 63 - 157
Target Start/End: Complemental strand, 77534 - 77439
Alignment:
Q  63 aaatatttgacgttgttttccatataaaatcaaaa-tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    |||||||| ||  |||||| |||||||||| |||| ||||||||| ||||| || |||||||||||||| || ||| |||| ||||||||| ||||    
T  77534 aaatattttacaatgttttgcatataaaataaaaaatatttaataaaaacattacattaatgttgatattttaaaagtagtcatgagtttttaaaa 77439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0636 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: scaffold0636
Description:

Target: scaffold0636; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 60 - 168
Target Start/End: Complemental strand, 1231 - 1121
Alignment:
Q  60 tgcaaatatttgacgttgttttccatataaaatcaaaa--tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    ||||||||||| ||| | ||||  ||||||||| ||||  |||||||||||||||||| ||||| || ||||| |||||||   | |||||||||||| |    
T  1231 tgcaaatatttaacgatatttttaatataaaataaaaacttatttaatagaaacactagattaaggtagatattttgaaaacgatcatgagttttcaata 1132  T
Q  158 ctttctcatat 168  Q
     ||| ||||||    
T  1131 ttttatcatat 1121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 62 - 157
Target Start/End: Complemental strand, 51256 - 51160
Alignment:
Q  62 caaatatttgacgttgttttccatataaaatcaaaa-tatttaatagaaacactaaattaatgttgatatgttgaaaatagttatgagttttcaaaa 157  Q
    ||||||||| |||  ||||| |||||||||| |||| || |||||| ||  |||| ||||||||| |||| || |||||||||||| ||||| ||||    
T  51256 caaatatttaacggcgttttacatataaaataaaaaataattaataaaactactacattaatgttaatattttaaaaatagttatgggtttttaaaa 51160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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