View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1502_low_5 (Length: 311)

Name: NF1502_low_5
Description: NF1502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1502_low_5
NF1502_low_5
[»] chr4 (12 HSPs)
chr4 (1-278)||(2390893-2391170)
chr4 (20-290)||(2381284-2381554)
chr4 (33-263)||(2380042-2380272)
chr4 (189-284)||(2382562-2382657)
chr4 (115-172)||(2367678-2367735)
chr4 (41-169)||(2376161-2376289)
chr4 (144-244)||(2621192-2621292)
chr4 (126-169)||(1547469-1547512)
chr4 (129-172)||(2373256-2373299)
chr4 (105-180)||(2460589-2460664)
chr4 (126-173)||(12126879-12126926)
chr4 (124-169)||(6007668-6007713)
[»] chr1 (3 HSPs)
chr1 (105-229)||(15837955-15838079)
chr1 (108-155)||(9581951-9581998)
chr1 (108-154)||(9587510-9587556)
[»] chr3 (1 HSPs)
chr3 (125-169)||(513446-513490)
[»] chr8 (2 HSPs)
chr8 (124-169)||(32152209-32152254)
chr8 (105-170)||(39516859-39516924)
[»] chr6 (1 HSPs)
chr6 (114-169)||(10578802-10578857)
[»] chr5 (2 HSPs)
chr5 (123-169)||(32268773-32268819)
chr5 (124-169)||(41900267-41900312)


Alignment Details
Target: chr4 (Bit Score: 258; Significance: 1e-144; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 2390893 - 2391170
Alignment:
Q  1 ccaaggttccaaaaacgatggcagcggaaacagcagaagggtgttcaaatttaccagatgagttgtgggaatacatcatcaaattccttgatggagatca 100  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||    
T  2390893 ccaaggttccaaaaacgatggcagcggaaacagcaaaagagtgttcaaatttaccagatgagttgtgggaatacatcatcaaattccttgatgaagacca 2390992  T
Q  101 ctatactttcaagtctctttctatcgtctccaaacaattactctccatcaccaacaatctccgattctccatcaaaatcacccaacaaaccatccctttc 200  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2390993 ctatactttcaagtctctttctatcgtctcgaaacaattactctccatcaccaacaatctccgattctccatcaaaatcacccaacaaaccatccctttc 2391092  T
Q  201 attcctcaaatcttccaacggttctctaatgtcacatccctcaatctcacatccaccaacctcaattacttctctcaa 278  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2391093 attcctcaaatcttccaacggttctctaatgtcacatccctcaatctcacatccaccaacctcaattacttctctcaa 2391170  T

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Target: chr4; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 20 - 290
Target Start/End: Original strand, 2381284 - 2381554
Alignment:
Q  20 ggcagcggaaacagcagaagggtgttcaaatttaccagatgagttgtgggaatacatcatcaaattccttgatggagatcactatactttcaagtctctt 119  Q
    |||||| | ||||||| ||| |||||||| ||||||||||||  | |||||||||||||||||||||||  ||||||| ||||  |||||||||||||||    
T  2381284 ggcagcagcaacagcaaaagcgtgttcaagtttaccagatgacctatgggaatacatcatcaaattcctcaatggagaccactgcactttcaagtctctt 2381383  T
Q  120 tctatcgtctccaaacaattactctccatcaccaacaatctccgattctccatcaaaatcacccaacaaaccatccctttcattcctcaaatcttccaac 219  Q
    || |||||||||||||| |||||||| |||||||||| ||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||    
T  2381384 tccatcgtctccaaacagttactctcgatcaccaacagtctccgattctccgtcaaaatcaccctacaaaccatccctttcattcctcaactcttccaac 2381483  T
Q  220 ggttctctaatgtcacatccctcaatctcacatccaccaacctcaattacttctctcaacacaatcacccc 290  Q
    | ||||||| ||||||||||||||||||| |||||| |||||||| |||||| |||| |||||||||||||    
T  2381484 gcttctctagtgtcacatccctcaatctcgcatccagcaacctcacttacttttctctacacaatcacccc 2381554  T

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Target: chr4; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 33 - 263
Target Start/End: Original strand, 2380042 - 2380272
Alignment:
Q  33 gcagaagggtgttcaaatttaccagatgagttgtgggaatacatcatcaaattccttgatggagatcactatactttcaagtctctttctatcgtctcca 132  Q
    |||||||  ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||| ||||||||||||| ||||||||||    
T  2380042 gcagaagcatgttcaaatttaccagatgagttatgggaatacatcatcaaattccttgatggagaccactgtactgtcaagtctctttccatcgtctcca 2380141  T
Q  133 aacaattactctccatcaccaacaatctccgattctccatcaaaatcacccaacaaaccatccctttcattcctcaaatcttccaacggttctctaatgt 232  Q
    |||| |||||||| |||||| ||| | |||||||| || |||||||||||||||||||||||||||| |||||||   |||| ||| |||    |||  |    
T  2380142 aacagttactctcgatcacctacagtttccgattcaccctcaaaatcacccaacaaaccatcccttttattcctcgcctcttgcaaaggtgtcgtaacat 2380241  T
Q  233 cacatccctcaatctcacatccaccaacctc 263  Q
    ||||||||||||||||||||||| |||||||    
T  2380242 cacatccctcaatctcacatccatcaacctc 2380272  T

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Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 189 - 284
Target Start/End: Original strand, 2382562 - 2382657
Alignment:
Q  189 accatccctttcattcctcaaatcttccaacggttctctaatgtcacatccctcaatctcacatccaccaacctcaattacttctctcaacacaat 284  Q
    |||||||||||||||||||   |||||| | || || |||||||||||||||||||| ||||||||  |||||||| | ||||||||||| |||||    
T  2382562 accatccctttcattcctcgcctcttccgaaggctccctaatgtcacatccctcaatatcacatccctcaacctcactcacttctctcaatacaat 2382657  T

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Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 115 - 172
Target Start/End: Original strand, 2367678 - 2367735
Alignment:
Q  115 ctctttctatcgtctccaaacaattactctccatcaccaacaatctccgattctccat 172  Q
    ||||||| ||||||||||||||||| |||||||||||||||  |||||||||||||||    
T  2367678 ctctttccatcgtctccaaacaatttctctccatcaccaaccgtctccgattctccat 2367735  T

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Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 41 - 169
Target Start/End: Original strand, 2376161 - 2376289
Alignment:
Q  41 gtgttcaaatttaccagatgagttgtgggaatacatcatcaaattccttgatggagatcactatactttcaagtctctttctatcgtctccaaacaatta 140  Q
    ||||||| |||||||| ||||||| ||||||||||||||||||||||| |  || ||  ||    |||| |||||||| || ||||||||||||   ||     
T  2376161 gtgttcatatttaccatatgagttatgggaatacatcatcaaattcctcgccggcgacaacccctctttgaagtctctctccatcgtctccaaaactttt 2376260  T
Q  141 ctctccatcaccaacaatctccgattctc 169  Q
    |||||||||||||||  | ||||||||||    
T  2376261 ctctccatcaccaaccgtttccgattctc 2376289  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 244
Target Start/End: Original strand, 2621192 - 2621292
Alignment:
Q  144 tccatcaccaacaatctccgattctccatcaaaatcacccaacaaaccatccctttcattcctcaaatcttccaacggttctctaatgtcacatccctca 243  Q
    ||||||||||||  ||| || |||||||||| |||| || |  |||||||||||||||||||||   ||||| |  ||||| ||||| ||||||||||||    
T  2621192 tccatcaccaaccgtctacggttctccatcacaatctccgataaaaccatccctttcattcctcgcctcttcgacaggttccctaatatcacatccctca 2621291  T
Q  244 a 244  Q
    |    
T  2621292 a 2621292  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 169
Target Start/End: Original strand, 1547469 - 1547512
Alignment:
Q  126 gtctccaaacaattactctccatcaccaacaatctccgattctc 169  Q
    |||||||||||||| |||||||||||||||  ||||||||||||    
T  1547469 gtctccaaacaattcctctccatcaccaaccgtctccgattctc 1547512  T

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Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 2373256 - 2373299
Alignment:
Q  129 tccaaacaattactctccatcaccaacaatctccgattctccat 172  Q
    ||||||||||| ||||||||||||||  ||||||||||||||||    
T  2373256 tccaaacaatttctctccatcaccaatcatctccgattctccat 2373299  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 105 - 180
Target Start/End: Complemental strand, 2460664 - 2460589
Alignment:
Q  105 actttcaagtctctttctatcgtctccaaacaattactctccatcaccaacaatctccgattctccatcaaaatca 180  Q
    |||||||| ||||| || || ||||||||||| || ||||||||||||||   ||||||||||||  |||||||||    
T  2460664 actttcaaatctctctccatggtctccaaacagttcctctccatcaccaatcgtctccgattctctctcaaaatca 2460589  T

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Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 12126926 - 12126879
Alignment:
Q  126 gtctccaaacaattactctccatcaccaacaatctccgattctccatc 173  Q
    |||||||||||||| |||||||||||||||  ||||| ||||||||||    
T  12126926 gtctccaaacaatttctctccatcaccaaccgtctcctattctccatc 12126879  T

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Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 6007713 - 6007668
Alignment:
Q  124 tcgtctccaaacaattactctccatcaccaacaatctccgattctc 169  Q
    ||||||| ||||| || |||||||||||||||| ||||||||||||    
T  6007713 tcgtctcgaaacagttcctctccatcaccaacagtctccgattctc 6007668  T

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Target: chr1 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 105 - 229
Target Start/End: Original strand, 15837955 - 15838079
Alignment:
Q  105 actttcaagtctctttctatcgtctccaaacaattactctccatcaccaacaatctccgattctccatcaaaatcacccaacaaaccatccctttcattc 204  Q
    ||||||||||| || || || ||||||||||| || |||||||||||||||  ||||||||||||| |||||||||   | ||||| |||||||||||||    
T  15837955 actttcaagtccctctcgatggtctccaaacagtttctctccatcaccaaccgtctccgattctccctcaaaatcatagatcaaacaatccctttcattc 15838054  T
Q  205 ctcaaatcttccaacggttctctaa 229  Q
    || |  |||||||| ||||| ||||    
T  15838055 ctaacctcttccaaaggttccctaa 15838079  T

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Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 108 - 155
Target Start/End: Complemental strand, 9581998 - 9581951
Alignment:
Q  108 ttcaagtctctttctatcgtctccaaacaattactctccatcaccaac 155  Q
    ||||||||||||||| ||||||||||||| || ||||| |||||||||    
T  9581998 ttcaagtctctttctgtcgtctccaaacagtttctctctatcaccaac 9581951  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 108 - 154
Target Start/End: Complemental strand, 9587556 - 9587510
Alignment:
Q  108 ttcaagtctctttctatcgtctccaaacaattactctccatcaccaa 154  Q
    ||||||||||||||| ||||||||||||| || |||||| |||||||    
T  9587556 ttcaagtctctttctgtcgtctccaaacagtttctctccgtcaccaa 9587510  T

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Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 513446 - 513490
Alignment:
Q  125 cgtctccaaacaattactctccatcaccaacaatctccgattctc 169  Q
    |||||| ||||| ||||||||||||||||||||||||||||||||    
T  513446 cgtctcaaaacagttactctccatcaccaacaatctccgattctc 513490  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 32152254 - 32152209
Alignment:
Q  124 tcgtctccaaacaattactctccatcaccaacaatctccgattctc 169  Q
    ||||||||||||| || |||||||||||||||| ||||||||||||    
T  32152254 tcgtctccaaacagttcctctccatcaccaacagtctccgattctc 32152209  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 105 - 170
Target Start/End: Complemental strand, 39516924 - 39516859
Alignment:
Q  105 actttcaagtctctttctatcgtctccaaacaattactctccatcaccaacaatctccgattctcc 170  Q
    |||||||||||||| || |||||||||| |||||| ||| |||||||||||  |||| ||||||||    
T  39516924 actttcaagtctctctccatcgtctccagacaatttctcgccatcaccaaccgtctcagattctcc 39516859  T

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Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 114 - 169
Target Start/End: Original strand, 10578802 - 10578857
Alignment:
Q  114 tctctttctatcgtctccaaacaattactctccatcaccaacaatctccgattctc 169  Q
    ||||| ||| |||||||||||||||| |||||||| ||||||| ||||| ||||||    
T  10578802 tctctatctctcgtctccaaacaattcctctccataaccaacagtctcctattctc 10578857  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 123 - 169
Target Start/End: Complemental strand, 32268819 - 32268773
Alignment:
Q  123 atcgtctccaaacaattactctccatcaccaacaatctccgattctc 169  Q
    |||||||||||||| ||||||||||||||||||  ||| ||||||||    
T  32268819 atcgtctccaaacagttactctccatcaccaaccgtcttcgattctc 32268773  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 169
Target Start/End: Original strand, 41900267 - 41900312
Alignment:
Q  124 tcgtctccaaacaattactctccatcaccaacaatctccgattctc 169  Q
    ||||||||||||| || |||||||||||||||| ||| ||||||||    
T  41900267 tcgtctccaaacagtttctctccatcaccaacactcttcgattctc 41900312  T

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