View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1502_low_7 (Length: 249)
Name: NF1502_low_7
Description: NF1502
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1502_low_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 230; Significance: 1e-127; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 242
Target Start/End: Complemental strand, 35094354 - 35094113
Alignment:
| Q |
1 |
tcgtcaaaagatacaaacaaatgaacaatgttaataggccagagtttcaagagcacatgagaagactgggaaggttgaatcatccgaatctccttcctct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
35094354 |
tcgtcaaaagatacaaacaaatgaacaatgttaataggccagagtttcaagagcacatgagaagactaggaaggttgaatcatccgaatctccttcctct |
35094255 |
T |
|
| Q |
101 |
cgtagcttactactacaaaagagacgagaaacttttcatcaccgactttgttcccaatggaagcttggccgttcgccttcacggtattttcattttcact |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35094254 |
cgtagcttactactacaaaagagacgagaaacttttcatcaccgactttgttcccaatggaagcttggccgttcgccttcacggtattttcattttcact |
35094155 |
T |
|
| Q |
201 |
tcaactaataaacatcatagaatataagtttaatattcttcg |
242 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
35094154 |
tcaactaataaacatcagagaatataagtttaatatttttcg |
35094113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 187 - 226
Target Start/End: Original strand, 32863427 - 32863466
Alignment:
| Q |
187 |
ttttcattttcacttcaactaataaacatcatagaatata |
226 |
Q |
| |
|
|||||||||| |||||||||||||||||| |||||||||| |
|
|
| T |
32863427 |
ttttcatttttacttcaactaataaacatgatagaatata |
32863466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 237
Target Start/End: Original strand, 14390477 - 14390526
Alignment:
| Q |
188 |
tttcattttcacttcaactaataaacatcatagaatataagtttaatatt |
237 |
Q |
| |
|
||||||||||||||||||||| |||||| ||| ||||||| || |||||| |
|
|
| T |
14390477 |
tttcattttcacttcaactaaaaaacatgatacaatataaattcaatatt |
14390526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 187 - 237
Target Start/End: Complemental strand, 47364879 - 47364829
Alignment:
| Q |
187 |
ttttcattttcacttcaactaataaacatcatagaatataagtttaatatt |
237 |
Q |
| |
|
||||||||||||||||||||||||||||| | |||| |||| ||||||||| |
|
|
| T |
47364879 |
ttttcattttcacttcaactaataaacataaaagaaaataaatttaatatt |
47364829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 225
Target Start/End: Complemental strand, 13806182 - 13806144
Alignment:
| Q |
187 |
ttttcattttcacttcaactaataaacatcatagaatat |
225 |
Q |
| |
|
||||||||||||||||||||||||||||| | ||||||| |
|
|
| T |
13806182 |
ttttcattttcacttcaactaataaacataagagaatat |
13806144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 184 - 226
Target Start/End: Original strand, 10195349 - 10195391
Alignment:
| Q |
184 |
gtattttcattttcacttcaactaataaacatcatagaatata |
226 |
Q |
| |
|
||||||||||||||||||||||||||| |||| ||| |||||| |
|
|
| T |
10195349 |
gtattttcattttcacttcaactaatagacatgataaaatata |
10195391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 187 - 237
Target Start/End: Original strand, 43537569 - 43537619
Alignment:
| Q |
187 |
ttttcattttcacttcaactaataaacatcatagaatataagtttaatatt |
237 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||| ||||||||| |
|
|
| T |
43537569 |
ttttcattttcacttcaactaataaacataggagaatatagatttaatatt |
43537619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 186
Target Start/End: Original strand, 42509285 - 42509430
Alignment:
| Q |
41 |
agagtttcaagagcacatgagaagactgggaaggttgaatcatccgaatctccttcctctcgtagcttactactacaaaagagacgagaaacttttcatc |
140 |
Q |
| |
|
||||||||||||||| |||||||| | ||||||||||| ||||| ||| | ||||||| || |||||||| || | || ||| ||||| || || | |
|
|
| T |
42509285 |
agagtttcaagagcatatgagaaggattggaaggttgaaccatcctaatttgattcctcttgttgcttactattatagaaaagaagagaagctcttggtt |
42509384 |
T |
|
| Q |
141 |
accgactttgttcccaatggaagcttggccgttcgccttcacggta |
186 |
Q |
| |
|
||||||||||||| || || ||| | || ||||||||||| |||| |
|
|
| T |
42509385 |
accgactttgttcagaacggtagcctagctgttcgccttcatggta |
42509430 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University