View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15030_high_1 (Length: 467)
Name: NF15030_high_1
Description: NF15030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15030_high_1 |
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| [»] scaffold0341 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 447
Target Start/End: Original strand, 6524202 - 6524650
Alignment:
| Q |
1 |
aacacttcctcaccaggtactacttattatgttaaaatatcttttgactttgtaggcaaagcattaacacttcctctccatgtggnnnnnnnnnnnnnnn |
100 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6524202 |
aacacttcctcaccaggtactacttattatgttaaaacatcttttgactttgtaggcaaagcattaacacttcctctccatgtggttttttggtttcctt |
6524301 |
T |
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| Q |
101 |
nnnnngtctaattgatgaaaaaccaannnnnnn--aattgaacagattgtattgtttgaagttatgtaatgtcccatgttgaatttggtttatacaggaa |
198 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6524302 |
ttttcgtctaattgatgaaaaaccaatttttttttaattgaacagattgtattgtttgaagttatgtaatgtcccatgttgaatttggtttatacaggaa |
6524401 |
T |
|
| Q |
199 |
atagcaacactactactgtcgtcatcgccgtagtagtaccagttgttgctgttgtggtgctcatttttatctgcatctatttaagagtaaggaagccaag |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6524402 |
atagcaacactactactgtcgtcatcgccgtagtagtaccagttgttgctgttgtagtgctcatttttatctgcatctgtttaagagtaaggaagccaag |
6524501 |
T |
|
| Q |
299 |
gaaaaagtttaaaagtaagttgaagtattcatgtgaagaatttatttctaacgatgttaattttaacctgcaatgaactgaattgtaattgtaaatgtta |
398 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6524502 |
gaaaaagtttaaaagtaagttgaagtattcatgtgaagaaattatttctaacgttgttaattttaacctgcaatgaactgaattgtaattgtaaatgtta |
6524601 |
T |
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| Q |
399 |
tctcatgtcacatgaaaagttctattttaacttgttttcatgtgtagtt |
447 |
Q |
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| T |
6524602 |
tctcatatcacatgaaaagttctattttaacttgttttcatgtgtagtt |
6524650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 259 - 308
Target Start/End: Complemental strand, 6498672 - 6498623
Alignment:
| Q |
259 |
tcatttttatctgcatctatttaagagtaaggaagccaaggaaaaagttt |
308 |
Q |
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| T |
6498672 |
tcatttttatctgcatctatttaagaataaggaagccaaagaaaacgttt |
6498623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 6505499 - 6505455
Alignment:
| Q |
259 |
tcatttttatctgcatctatttaagagtaaggaagccaaggaaaa |
303 |
Q |
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| T |
6505499 |
tcatttttatctgcatctatttaagactaagaaagccaaagaaaa |
6505455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 259 - 308
Target Start/End: Complemental strand, 6516387 - 6516338
Alignment:
| Q |
259 |
tcatttttatctgcatctatttaagagtaaggaagccaaggaaaaagttt |
308 |
Q |
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|||||||||| ||||||||||| | |||||||||||||| ||||| |||| |
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| T |
6516387 |
tcatttttatatgcatctatttgaaagtaaggaagccaaagaaaaggttt |
6516338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 7177 - 7133
Alignment:
| Q |
259 |
tcatttttatctgcatctatttaagagtaaggaagccaaggaaaa |
303 |
Q |
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|||||||||||||||||||||||||| |||| ||||||| ||||| |
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| T |
7177 |
tcatttttatctgcatctatttaagactaagaaagccaaagaaaa |
7133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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