View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15030_low_1 (Length: 549)
Name: NF15030_low_1
Description: NF15030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15030_low_1 |
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| [»] chr7 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 499; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 19 - 549
Target Start/End: Original strand, 34506063 - 34506588
Alignment:
| Q |
19 |
actggctaagtttggttattgcagtattaaaagcttttgtgttagaggtttttccatcaccaacaccaccaaaatctgtcaaaactgcactgtgttttct |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34506063 |
actggctaagtttggttattgcagtattaaaagcttttgtgttagaggtttttccatcaccaacaccaccaaaatctgtcaaaactgcactgtgttttct |
34506162 |
T |
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| Q |
119 |
gcaattgattgcaaggtaatcaaggttgcattctgctagtgatccaaatatcaaaactatagaaatcacacaaataacctgcacaaaacaatgataatat |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34506163 |
gcaattgattgcaaggtaatcaaggttgcattctgctagtgatccaaatatcaaaactatagaaatcacacaaataacctgcacaaaacaatgataatat |
34506262 |
T |
|
| Q |
219 |
aagtctatggacacagaaaataaaaataactacatgtaacgtttattttcttagacataaataaggaatataaaaaactactgaagcattgacatagaac |
318 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
34506263 |
aagtttatggacacagaaaataaaaataactacatgtaacgtttattttcttagacataagtaaggaatataaaaaactactgaagcattgacatagaac |
34506362 |
T |
|
| Q |
319 |
aggtatatgaacaacacataaaaactgtgcacaatgaaaattacaaaggaattttcgaatcttggactcttcatgttctgattagatatatgacaattgt |
418 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34506363 |
aggtatatgaacaacacataaaaactatgcacaatgaaaattacaaaggaattttcgaatcttggactcttcatgttctgattagatatatgacaattgt |
34506462 |
T |
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| Q |
419 |
agtagatatagataaatcataggcatacgatcgatattatatatagagaggatcatgactacaaaatgcatattaagttaagtaataaataaatgcgaat |
518 |
Q |
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| T |
34506463 |
agtagatatagataaatcataggcatacgatcgatattatatatagagaggatcatgactacaaaatgcata-----ttaagtaataaataaatgcgaat |
34506557 |
T |
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| Q |
519 |
caacgcttattattcttagtggttaatgttt |
549 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
34506558 |
caacgcttattattcttagtggttaatgttt |
34506588 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 47 - 100
Target Start/End: Complemental strand, 29762920 - 29762867
Alignment:
| Q |
47 |
aaaagcttttgtgttagaggtttttccatcaccaacaccaccaaaatctgtcaa |
100 |
Q |
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|||||| ||||| ||||| || |||||||| ||||||||||||||||||||||| |
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| T |
29762920 |
aaaagcctttgtattagatgtatttccatctccaacaccaccaaaatctgtcaa |
29762867 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 103; Significance: 5e-51; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 145 - 392
Target Start/End: Original strand, 45079544 - 45079785
Alignment:
| Q |
145 |
tgcattctgctagtgatccaaatatcaaaactatagaaatcacacaaataacctgcacaaaacaatgataatataagtctatggacacagaaaataaaaa |
244 |
Q |
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||||||||||||||||||| ||||||| ||||| ||| ||||||| ||||||||||||||||||||| | |||||||||| | || ||||||||| ||| |
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| T |
45079544 |
tgcattctgctagtgatcccaatatcagaactacagatatcacaccaataacctgcacaaaacaatggt--tataagtcta-gcacgcagaaaatataaa |
45079640 |
T |
|
| Q |
245 |
taactacatgtaacgtttattttcttagacataaataaggaatataaaaaactactgaagcattgacatagaacaggtatatgaacaacacataaaaact |
344 |
Q |
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||| ||||||||||||||| ||||| || ||||||| | || |||||||||| ||| ||||| ||||||||| |||||||||| ||||||||||| |
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| T |
45079641 |
taatcacatgtaacgtttatattcttggatataaataggcaacataaaaaacttttgagacattgtcatagaaca---atatgaacaatacataaaaact |
45079737 |
T |
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| Q |
345 |
gtgcacaatgaaaattacaaaggaattttcgaatcttggactcttcat |
392 |
Q |
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|||| || |||||||||| |||||||||||||||||| ||||||||| |
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| T |
45079738 |
atgcagaaagaaaattacataggaattttcgaatcttgcactcttcat |
45079785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 21 - 146
Target Start/End: Original strand, 45079393 - 45079518
Alignment:
| Q |
21 |
tggctaagtttggttattgcagtattaaaagcttttgtgttagaggtttttccatcaccaacaccaccaaaatctgtcaaaactgcactgtgttttctgc |
120 |
Q |
| |
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|||||||| ||||||||||| | ||||||||||||||||||| |||||| |||||||||||| ||||||||||||| |||||||||||||||||||||| |
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| T |
45079393 |
tggctaaggttggttattgctgcattaaaagcttttgtgttaagggttttgccatcaccaacagcaccaaaatctgttaaaactgcactgtgttttctgc |
45079492 |
T |
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| Q |
121 |
aattgattgcaaggtaatcaaggttg |
146 |
Q |
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||||||||||| | ||||||| |||| |
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| T |
45079493 |
aattgattgcaggataatcaaagttg |
45079518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 45076269 - 45076375
Alignment:
| Q |
21 |
tggctaagtttggttattgcagtattaaaagcttttgtgttagaggtttttccatcaccaacaccaccaaaatctgtcaaaactgcactgtgttttctgc |
120 |
Q |
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|||||||| ||||||||||| | |||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45076269 |
tggctaagattggttattgctgaattaaatgcctttgtgttaagggtttttccatcaccaacaccaccaaaatctgtcaaaactgcactgtgttttctgc |
45076368 |
T |
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| Q |
121 |
aattgat |
127 |
Q |
| |
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||||||| |
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| T |
45076369 |
aattgat |
45076375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 21 - 127
Target Start/End: Original strand, 45083684 - 45083790
Alignment:
| Q |
21 |
tggctaagtttggttattgcagtattaaaagcttttgtgttagaggtttttccatcaccaacaccaccaaaatctgtcaaaactgcactgtgttttctgc |
120 |
Q |
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|||||||| ||||||||||| | |||||| || ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45083684 |
tggctaagattggttattgctgaattaaatgcctttgtgttaagggtttttccatcaccaacaccaccaaaatctgtcaaaactgcactgtgttttctgc |
45083783 |
T |
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| Q |
121 |
aattgat |
127 |
Q |
| |
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||||||| |
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| T |
45083784 |
aattgat |
45083790 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 145 - 277
Target Start/End: Original strand, 45068783 - 45068913
Alignment:
| Q |
145 |
tgcattctgctagtgatccaaatatcaaaactatagaaatcacacaaataacctgcacaaaacaatgataatataagtctatggacacagaaaataaaaa |
244 |
Q |
| |
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||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| ||||||| |||| ||| |||||| | |||||||||||||| |
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| T |
45068783 |
tgcattctgctagtgataccaatatcaaaactatagaaatcacacaaataacctgcataaaacaacagtaat-taa-tctatgcatacagaaaataaaaa |
45068880 |
T |
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| Q |
245 |
taactacatgtaacgtttattttcttagacata |
277 |
Q |
| |
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||| || |||||| |||||||||||||||||| |
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| T |
45068881 |
caaccacctgtaacatttattttcttagacata |
45068913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 21 - 141
Target Start/End: Original strand, 45068632 - 45068752
Alignment:
| Q |
21 |
tggctaagtttggttattgcagtattaaaagcttttgtgttagaggtttttccatcaccaacaccaccaaaatctgtcaaaactgcactgtgttttctgc |
120 |
Q |
| |
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|||||||| ||||||||||| | |||||| || ||||||||| |||||| || ||||||||| ||||||||||||| ||||||||| ||||||||| || |
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| T |
45068632 |
tggctaagattggttattgctgaattaaatgcctttgtgttaagggttttgccgtcaccaacagcaccaaaatctgttaaaactgcattgtgttttcggc |
45068731 |
T |
|
| Q |
121 |
aattgattgcaaggtaatcaa |
141 |
Q |
| |
|
||||||||||| |||| |||| |
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| T |
45068732 |
aattgattgcatggtagtcaa |
45068752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 144 - 210
Target Start/End: Original strand, 45076419 - 45076485
Alignment:
| Q |
144 |
ttgcattctgctagtgatccaaatatcaaaactatagaaatcacacaaataacctgcacaaaacaat |
210 |
Q |
| |
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||||||||||||| ||| |||||||||| || || ||| ||||||| |||||||||||||||||||| |
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| T |
45076419 |
ttgcattctgctaatgaaccaaatatcagaagtacagagatcacaccaataacctgcacaaaacaat |
45076485 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 145 - 210
Target Start/End: Original strand, 45083835 - 45083900
Alignment:
| Q |
145 |
tgcattctgctagtgatccaaatatcaaaactatagaaatcacacaaataacctgcacaaaacaat |
210 |
Q |
| |
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||||||||||||||| ||| ||||||| ||||| ||| ||||||| ||||||||||||||||||| |
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| T |
45083835 |
tgcattctgctagtgttcccaatatcacaactacagagatcacacgtataacctgcacaaaacaat |
45083900 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 346 - 400
Target Start/End: Original strand, 45068925 - 45068979
Alignment:
| Q |
346 |
tgcacaatgaaaattacaaaggaattttcgaatcttggactcttcatgttctgat |
400 |
Q |
| |
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||||||| || ||||||| |||||||| ||||| ||| ||||||||||||||||| |
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| T |
45068925 |
tgcacaaagagaattacataggaatttccgaatattgcactcttcatgttctgat |
45068979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 456 - 494
Target Start/End: Original strand, 45079837 - 45079875
Alignment:
| Q |
456 |
tatatatagagaggatcatgactacaaaatgcatattaa |
494 |
Q |
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||||||||||||||||||||| || |||||||||||||| |
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| T |
45079837 |
tatatatagagaggatcatgaataaaaaatgcatattaa |
45079875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 463 - 496
Target Start/End: Original strand, 45069034 - 45069067
Alignment:
| Q |
463 |
agagaggatcatgactacaaaatgcatattaagt |
496 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |
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| T |
45069034 |
agagaggattatgactacaaaatgcatattaagt |
45069067 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 34 - 94
Target Start/End: Original strand, 11065136 - 11065196
Alignment:
| Q |
34 |
ttattgcagtattaaaagcttttgtgttagaggtttttccatcaccaacaccaccaaaatc |
94 |
Q |
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||||||||| |||||||| |||||||| || ||||||||||| ||||||||||||||||| |
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| T |
11065136 |
ttattgcagatttaaaagcctttgtgtttgatgtttttccatctccaacaccaccaaaatc |
11065196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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