View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15030_low_13 (Length: 243)

Name: NF15030_low_13
Description: NF15030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15030_low_13
NF15030_low_13
[»] chr4 (8 HSPs)
chr4 (5-226)||(26416969-26417190)
chr4 (99-147)||(36218937-36218985)
chr4 (99-226)||(54997998-54998124)
chr4 (173-220)||(26698945-26698992)
chr4 (169-223)||(32212837-32212891)
chr4 (173-226)||(29628074-29628127)
chr4 (99-148)||(34483718-34483767)
chr4 (99-147)||(5834028-5834076)
[»] chr2 (3 HSPs)
chr2 (100-226)||(11512064-11512191)
chr2 (168-226)||(39445774-39445832)
chr2 (174-216)||(15268308-15268350)
[»] chr3 (11 HSPs)
chr3 (99-148)||(17378774-17378823)
chr3 (4-93)||(36835662-36835746)
chr3 (4-93)||(36839689-36839773)
chr3 (99-145)||(39096328-39096374)
chr3 (102-147)||(38138453-38138498)
chr3 (99-143)||(25926615-25926659)
chr3 (168-226)||(3432823-3432881)
chr3 (106-148)||(24744609-24744651)
chr3 (168-206)||(48457841-48457879)
chr3 (99-144)||(50345799-50345844)
chr3 (173-220)||(46048819-46048867)
[»] chr5 (5 HSPs)
chr5 (99-147)||(38956666-38956714)
chr5 (99-143)||(13417487-13417531)
chr5 (104-147)||(40976258-40976301)
chr5 (168-218)||(33494880-33494930)
chr5 (106-158)||(41521053-41521104)
[»] chr7 (4 HSPs)
chr7 (169-223)||(958147-958201)
chr7 (168-223)||(17603963-17604017)
chr7 (102-147)||(37503745-37503790)
chr7 (176-220)||(48767297-48767342)
[»] chr1 (9 HSPs)
chr1 (99-147)||(7789583-7789631)
chr1 (169-225)||(5827454-5827511)
chr1 (99-144)||(30335960-30336005)
chr1 (99-147)||(1774760-1774808)
chr1 (172-226)||(33259579-33259634)
chr1 (172-226)||(33279738-33279793)
chr1 (169-226)||(42400930-42400988)
chr1 (174-222)||(7712366-7712415)
chr1 (168-209)||(48722044-48722085)
[»] chr8 (5 HSPs)
chr8 (169-227)||(18806908-18806964)
chr8 (100-147)||(22324423-22324470)
chr8 (103-148)||(5536006-5536051)
chr8 (99-147)||(18806840-18806887)
chr8 (99-147)||(44103988-44104036)


Alignment Details
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 5 - 226
Target Start/End: Original strand, 26416969 - 26417190
Alignment:
Q  5 tgcaacatctactcctcattcgaaatgggacagcgagcagttactatactataattgagggaaagaataaaagacaactttatgcttaagaacgtccaca 104  Q
    |||||||  |||||||||||| ||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  26416969 tgcaacacttactcctcattccaaatgggacagtgggcagttactatactataattgagggaaagaataaaagacaactttatgcttaagagcatccaca 26417068  T
Q  105 ttggtagggtctttaccatttaagacacggtacctaataggtattgtcattgtgagnnnnnnntttgggggtcttttaagacctggggtctcacttaaga 204  Q
    |||||||||||||||| |||||||||||||||||||||| ||| |  ||||||||         |||||||||| |||||||| ||||||||||||||||    
T  26417069 ttggtagggtctttacaatttaagacacggtacctaatatgtactcccattgtgataaaaaaaattgggggtctcttaagacccggggtctcacttaaga 26417168  T
Q  205 ccccaatcttaagtggacccca 226  Q
    ||||||||||||||| ||||||    
T  26417169 ccccaatcttaagtgaacccca 26417190  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 36218937 - 36218985
Alignment:
Q  99 tccacattggtagggtctttaccatttaagacacggtacctaataggta 147  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||    
T  36218937 tccacattggtagggtctttaccatttaagattcggtacctaataggta 36218985  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 226
Target Start/End: Original strand, 54997998 - 54998124
Alignment:
Q  99 tccacattggtagggtctttaccatttaagacacggtacctaataggtattgtcattgtgagnnnnnnntttgggggtcttttaagacctggggtctcac 198  Q
    |||||||| ||||| ||||||||||||||||  |||||||||||||||| |   |||||| |        | | |||||| |||||||| ||||||||||    
T  54997998 tccacatttgtaggatctttaccatttaagatccggtacctaataggtactccaattgtggggaaaataat-gagggtctcttaagacccggggtctcac 54998096  T
Q  199 ttaagaccccaatcttaagtggacccca 226  Q
    ||||||||  ||||||||||||| ||||    
T  54998097 ttaagaccttaatcttaagtggaaccca 54998124  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 26698945 - 26698992
Alignment:
Q  173 gggtcttttaagacctggggtctcacttaagaccccaatcttaagtgg 220  Q
    ||||||| ||||| | ||||||||||||||||||||| ||||||||||    
T  26698945 gggtcttataagaacaggggtctcacttaagaccccattcttaagtgg 26698992  T

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Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 32212891 - 32212837
Alignment:
Q  169 ttgggggtcttttaagacctggggtctcacttaagaccccaatcttaagtggacc 223  Q
    |||||||||| ||||||||  ||||||||||||||||| || |||||||| ||||    
T  32212891 ttgggggtctcttaagacccagggtctcacttaagacctcattcttaagtagacc 32212837  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 29628127 - 29628074
Alignment:
Q  173 gggtcttttaagacctggggtctcacttaagaccccaatcttaagtggacccca 226  Q
    |||||| |||||||   |||||| ||||||||||||||| ||||||||||||||    
T  29628127 gggtctcttaagactcagggtcttacttaagaccccaattttaagtggacccca 29628074  T

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Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 34483767 - 34483718
Alignment:
Q  99 tccacattggtagggtctttaccatttaagacacggtacctaataggtat 148  Q
    ||||||||| ||| |||||||||||||||||  | |||||||||||||||    
T  34483767 tccacattgatagagtctttaccatttaagatccagtacctaataggtat 34483718  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 5834028 - 5834076
Alignment:
Q  99 tccacattggtagggtctttaccatttaagacacggtacctaataggta 147  Q
    |||||| ||||||||| || || ||||||||| ||||||||||||||||    
T  5834028 tccacaatggtagggttttaactatttaagacccggtacctaataggta 5834076  T

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Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 100 - 226
Target Start/End: Complemental strand, 11512191 - 11512064
Alignment:
Q  100 ccacattggtagggtctttaccatttaagacacggtacctaataggtattgtcattgtgagnnnnnnntttgggggtcttttaagacctggggtctcact 199  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||    || ||||         ||||||||||| ||||||||  |||||| |||    
T  11512191 ccacattggtagggtctttaccatttaagacccggtacctaataggtacccccaatgtggaaaaaaattttgggggtctcttaagacccagggtctaact 11512092  T
Q  200 taaga-ccccaatcttaagtggacccca 226  Q
    ||||| ||||||||||||||||||||||    
T  11512091 taagacccccaatcttaagtggacccca 11512064  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 39445774 - 39445832
Alignment:
Q  168 tttgggggtcttttaagacctggggtctcacttaagaccccaatcttaagtggacccca 226  Q
    ||||||| |||||||||| | ||||||||||||||||||||| ||||||||||||||||    
T  39445774 tttggggttcttttaagatccggggtctcacttaagaccccattcttaagtggacccca 39445832  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 15268308 - 15268350
Alignment:
Q  174 ggtcttttaagacctggggtctcacttaagaccccaatcttaa 216  Q
    |||||| |||||||| |||||||||||||||| ||||||||||    
T  15268308 ggtcttataagacctagggtctcacttaagactccaatcttaa 15268350  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 99 - 148
Target Start/End: Complemental strand, 17378823 - 17378774
Alignment:
Q  99 tccacattggtagggtctttaccatttaagacacggtacctaataggtat 148  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||    
T  17378823 tccacattggtagggtctttaccatttaaaacccggtacctaataggtat 17378774  T

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Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 36835746 - 36835662
Alignment:
Q  4 gtgcaacatctactcctcattcgaaatgggacagcgagcagttactatactataattgagggaaagaataaaagacaactttatgcttaa 93  Q
    |||||||| ||||||||||||| |||||||| || | ||||||||     |||||||||||||||||||||||||| ||||| |||||||    
T  36835746 gtgcaacaactactcctcattccaaatgggatagtgggcagttac-----tataattgagggaaagaataaaagaccactttctgcttaa 36835662  T

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Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 93
Target Start/End: Complemental strand, 36839773 - 36839689
Alignment:
Q  4 gtgcaacatctactcctcattcgaaatgggacagcgagcagttactatactataattgagggaaagaataaaagacaactttatgcttaa 93  Q
    |||||||| ||||||||||||| |||||||| || | ||||||||     |||||||||||||||||||||||||| ||||| |||||||    
T  36839773 gtgcaacaactactcctcattccaaatgggatagtgggcagttac-----tataattgagggaaagaataaaagaccactttctgcttaa 36839689  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 99 - 145
Target Start/End: Complemental strand, 39096374 - 39096328
Alignment:
Q  99 tccacattggtagggtctttaccatttaagacacggtacctaatagg 145  Q
    ||||||||||||||||||||||||||||| || | ||||||||||||    
T  39096374 tccacattggtagggtctttaccatttaaaactcagtacctaatagg 39096328  T

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Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 102 - 147
Target Start/End: Complemental strand, 38138498 - 38138453
Alignment:
Q  102 acattggtagggtctttaccatttaagacacggtacctaataggta 147  Q
    ||||||||||||||||||||||||||||| || || ||||||||||    
T  38138498 acattggtagggtctttaccatttaagacccgatatctaataggta 38138453  T

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Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 25926659 - 25926615
Alignment:
Q  99 tccacattggtagggtctttaccatttaagacacggtacctaata 143  Q
    ||||||||||||| ||||||||||||||| || ||||||||||||    
T  25926659 tccacattggtagagtctttaccatttaaaacccggtacctaata 25926615  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 226
Target Start/End: Original strand, 3432823 - 3432881
Alignment:
Q  168 tttgggggtcttttaagacctggggtctcacttaagaccccaatcttaagtggacccca 226  Q
    |||||||||||| |||||| |||||||| |||||||||||||   |||||||| |||||    
T  3432823 tttgggggtcttctaagacatggggtctaacttaagaccccatctttaagtggtcccca 3432881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 148
Target Start/End: Complemental strand, 24744651 - 24744609
Alignment:
Q  106 tggtagggtctttaccatttaagacacggtacctaataggtat 148  Q
    |||| ||||||| ||||||||||||||||||||||||| ||||    
T  24744651 tggtggggtcttcaccatttaagacacggtacctaataagtat 24744609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 206
Target Start/End: Original strand, 48457841 - 48457879
Alignment:
Q  168 tttgggggtcttttaagacctggggtctcacttaagacc 206  Q
    ||||||||||| |||||||| ||||||||||||||||||    
T  48457841 tttgggggtctcttaagacccggggtctcacttaagacc 48457879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 99 - 144
Target Start/End: Original strand, 50345799 - 50345844
Alignment:
Q  99 tccacattggtagggtctttaccatttaagacacggtacctaatag 144  Q
    ||||||| |||| ||||||||||||||||||| || ||||||||||    
T  50345799 tccacatcggtatggtctttaccatttaagacccgatacctaatag 50345844  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 173 - 220
Target Start/End: Original strand, 46048819 - 46048867
Alignment:
Q  173 gggtcttttaagacctggggtctcacttaagaccc-caatcttaagtgg 220  Q
    ||||||| ||||||  ||||||||||||||||||| |||||||||||||    
T  46048819 gggtcttataagactcggggtctcacttaagaccctcaatcttaagtgg 46048867  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 38956666 - 38956714
Alignment:
Q  99 tccacattggtagggtctttaccatttaagacacggtacctaataggta 147  Q
    |||||||||||||||||||||||||||||||  ||||||||||||||||    
T  38956666 tccacattggtagggtctttaccatttaagatccggtacctaataggta 38956714  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 143
Target Start/End: Complemental strand, 13417531 - 13417487
Alignment:
Q  99 tccacattggtagggtctttaccatttaagacacggtacctaata 143  Q
    ||||||| |||||||||||||||||||||||  ||||||||||||    
T  13417531 tccacatcggtagggtctttaccatttaagatccggtacctaata 13417487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 147
Target Start/End: Original strand, 40976258 - 40976301
Alignment:
Q  104 attggtagggtctttaccatttaagacacggtacctaataggta 147  Q
    ||||| ||||||||||||||||||||| ||||| ||||||||||    
T  40976258 attggaagggtctttaccatttaagacccggtatctaataggta 40976301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 168 - 218
Target Start/End: Complemental strand, 33494930 - 33494880
Alignment:
Q  168 tttgggggtcttttaagacctggggtctcacttaagaccccaatcttaagt 218  Q
    |||||| |||| |||||||| || |||||||||||||||||| ||||||||    
T  33494930 tttgggagtctcttaagacccggagtctcacttaagaccccattcttaagt 33494880  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 106 - 158
Target Start/End: Complemental strand, 41521104 - 41521053
Alignment:
Q  106 tggtagggtctttaccatttaagacacggtacctaataggtattgtcattgtg 158  Q
    |||||||||||| |||||||||||| | |||||||||||||| | ||||||||    
T  41521104 tggtagggtcttaaccatttaagac-ccgtacctaataggtactctcattgtg 41521053  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 169 - 223
Target Start/End: Complemental strand, 958201 - 958147
Alignment:
Q  169 ttgggggtcttttaagacctggggtctcacttaagaccccaatcttaagtggacc 223  Q
    |||||||||| ||||||||  |||||| |||||||||||||||||||||||||||    
T  958201 ttgggggtctcttaagacccagggtctaacttaagaccccaatcttaagtggacc 958147  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 223
Target Start/End: Complemental strand, 17604017 - 17603963
Alignment:
Q  168 tttgggggtcttttaagacctggggtctcacttaagaccccaatcttaagtggacc 223  Q
    ||||||||||| |||||||| ||| ||||||||||||| ||| |||||||||||||    
T  17604017 tttgggggtctcttaagacccggg-tctcacttaagactccattcttaagtggacc 17603963  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 37503745 - 37503790
Alignment:
Q  102 acattggtagggtctttaccatttaagacacggtacctaataggta 147  Q
    ||||||||||| ||||||| ||||||||| || |||||||||||||    
T  37503745 acattggtaggatctttactatttaagacccgatacctaataggta 37503790  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 220
Target Start/End: Complemental strand, 48767342 - 48767297
Alignment:
Q  176 tcttttaagacctggggtctcacttaagaccc-caatcttaagtgg 220  Q
    |||| |||||||||||||||||| |||||||| |||||||||||||    
T  48767342 tcttataagacctggggtctcacataagaccctcaatcttaagtgg 48767297  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000005; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 7789583 - 7789631
Alignment:
Q  99 tccacattggtagggtctttaccatttaagacacggtacctaataggta 147  Q
    |||||||||||| ||||||||||||||||||| | ||||||||||||||    
T  7789583 tccacattggtaaggtctttaccatttaagacccagtacctaataggta 7789631  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 169 - 225
Target Start/End: Original strand, 5827454 - 5827511
Alignment:
Q  169 ttgggggtcttttaagacctggggtctcacttaagacccc-aatcttaagtggacccc 225  Q
    |||||||||| |||||||   ||||||||||||||||||| |||||||||||||||||    
T  5827454 ttgggggtctcttaagactcagggtctcacttaagaccccaaatcttaagtggacccc 5827511  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 99 - 144
Target Start/End: Complemental strand, 30336005 - 30335960
Alignment:
Q  99 tccacattggtagggtctttaccatttaagacacggtacctaatag 144  Q
    ||||||||| || ||||||||||||||||||| |||||||||||||    
T  30336005 tccacattgatatggtctttaccatttaagacccggtacctaatag 30335960  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 1774760 - 1774808
Alignment:
Q  99 tccacattggtagggtctttaccatttaagacacggtacctaataggta 147  Q
    |||||||||||||||||||||||  ||||||  ||||||||||||||||    
T  1774760 tccacattggtagggtctttaccgattaagatccggtacctaataggta 1774808  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 33259634 - 33259579
Alignment:
Q  172 ggggtcttttaagacctggggtctcacttaaga-ccccaatcttaagtggacccca 226  Q
    ||||||| |||||||| ||||||||||||| || ||||| ||||||||||||||||    
T  33259634 ggggtctcttaagacccggggtctcacttatgatccccattcttaagtggacccca 33259579  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 172 - 226
Target Start/End: Complemental strand, 33279793 - 33279738
Alignment:
Q  172 ggggtcttttaagacctggggtctcacttaaga-ccccaatcttaagtggacccca 226  Q
    ||||||| |||||||| ||||||||||||| || ||||| ||||||||||||||||    
T  33279793 ggggtctcttaagacccggggtctcacttatgatccccattcttaagtggacccca 33279738  T

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Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 169 - 226
Target Start/End: Original strand, 42400930 - 42400988
Alignment:
Q  169 ttgggggtcttttaagacctggggtctcacttaagaccc-caatcttaagtggacccca 226  Q
    ||||||||||| |||||||  ||||||||||||||||||  | ||||||||||||||||    
T  42400930 ttgggggtcttctaagacccagggtctcacttaagacccttattcttaagtggacccca 42400988  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 174 - 222
Target Start/End: Complemental strand, 7712415 - 7712366
Alignment:
Q  174 ggtcttttaagacctggggtctcacttaagaccccaa-tcttaagtggac 222  Q
    ||||| ||||||||  ||||||||||||||||||||| ||||||||||||    
T  7712415 ggtctcttaagacccagggtctcacttaagaccccaattcttaagtggac 7712366  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 168 - 209
Target Start/End: Complemental strand, 48722085 - 48722044
Alignment:
Q  168 tttgggggtcttttaagacctggggtctcacttaagacccca 209  Q
    |||||||||||| |||||| |||||||| |||||||||||||    
T  48722085 tttgggggtcttctaagacatggggtctaacttaagacccca 48722044  T

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Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 169 - 227
Target Start/End: Original strand, 18806908 - 18806964
Alignment:
Q  169 ttgggggtcttttaagacctggggtctcacttaagaccccaatcttaagtggaccccat 227  Q
    |||||||||| |||||||   |||||| ||||||||||| |||||||||||||||||||    
T  18806908 ttgggggtctcttaagact--gggtcttacttaagaccctaatcttaagtggaccccat 18806964  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 147
Target Start/End: Original strand, 22324423 - 22324470
Alignment:
Q  100 ccacattggtagggtctttaccatttaagacacggtacctaataggta 147  Q
    ||||||||||||||||||||||||||| ||  ||||| ||||||||||    
T  22324423 ccacattggtagggtctttaccatttatgatccggtatctaataggta 22324470  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 103 - 148
Target Start/End: Complemental strand, 5536051 - 5536006
Alignment:
Q  103 cattggtagggtctttaccatttaagacacggtacctaataggtat 148  Q
    |||||| |||||||| || ||||||||||||||||||| |||||||    
T  5536051 cattggaagggtcttaactatttaagacacggtacctattaggtat 5536006  T

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Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 18806840 - 18806887
Alignment:
Q  99 tccacattggtagggtctttaccatttaagacacggtacctaataggta 147  Q
    |||||||||||||  | ||||||||||||||| ||||||||||||||||    
T  18806840 tccacattggtagatt-tttaccatttaagacccggtacctaataggta 18806887  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 147
Target Start/End: Original strand, 44103988 - 44104036
Alignment:
Q  99 tccacattggtagggtctttaccatttaagacacggtacctaataggta 147  Q
    |||||||||||  |||||| ||||||||||||  |||||||||||||||    
T  44103988 tccacattggtgaggtcttcaccatttaagacttggtacctaataggta 44104036  T

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