View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15030_low_15 (Length: 236)
Name: NF15030_low_15
Description: NF15030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15030_low_15 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 201; Significance: 1e-110; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 22684339 - 22684112
Alignment:
| Q |
1 |
tcatagcctacaactgtaattgcgactgcaata--aaggttttagagatctcctaaacgccaattgtgaccgcaattgcggccacatttgctcaagtttt |
98 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
22684339 |
tcatagcctacaactgtaattgcggctgcaatataaaggttttagagatctcctaaacgccaattgtgaccgcaattgcagccacatttgctcaagtttt |
22684240 |
T |
|
| Q |
99 |
gtagcatattggtgtcttacttgccaatatgttactcactatcgcaggaagcaagttataatgacaaagagaatgaatttgcagtgtttaattaatgctt |
198 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
22684239 |
gtagcatattggtgtcttacttgccaatatgttactcactatcgctggaagcaagttataatgacaaagagaatgaatttgcagtgtttaattaatgctt |
22684140 |
T |
|
| Q |
199 |
tatttgtttaaatttaccacaggttctg |
226 |
Q |
| |
|
|||||||| ||||||||||||||||||| |
|
|
| T |
22684139 |
tatttgttcaaatttaccacaggttctg |
22684112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 22695822 - 22695722
Alignment:
| Q |
1 |
tcatagcctacaactgtaattgcgactgcaata--aaggttttagagatctcctaaacgccaattgtgaccgcaattgcggccacatttgctcaagtttt |
98 |
Q |
| |
|
|||||||||||||||||||||||| |||| ||| ||||||||||||||||||| ||| || |||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
22695822 |
tcatagcctacaactgtaattgcggctgcgatataaaggttttagagatctcctctacggcagttgtgaccgcaattgcagccacatttgctaaagtttt |
22695723 |
T |
|
| Q |
99 |
g |
99 |
Q |
| |
|
| |
|
|
| T |
22695722 |
g |
22695722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 226
Target Start/End: Complemental strand, 22695596 - 22695522
Alignment:
| Q |
153 |
gttataatgacaaagagaat-gaatttgcagtgtttaattaatgctttatttgtttaaatttaccacaggttctg |
226 |
Q |
| |
|
|||||||||||||||| ||| || ||| | |||| ||||| |||||||||||||| |||||||| ||||||||| |
|
|
| T |
22695596 |
gttataatgacaaagacaatagatttttcggtgtgtaattgatgctttatttgttcaaatttactgcaggttctg |
22695522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University