View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15030_low_3 (Length: 401)
Name: NF15030_low_3
Description: NF15030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15030_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 20 - 388
Target Start/End: Complemental strand, 6577638 - 6577275
Alignment:
| Q |
20 |
ctaaggatattgaaaaagcttttgaagaaaaccaacctacagaaactagtgataattcaattaaaggcccaacaccgtttatgttcgaaactgaagttga |
119 |
Q |
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| T |
6577638 |
ctaaggatattgaaaaagcttttgaagaaaaccaagctacagaaactagtgataattcaattaaaggcccaacaccgtttatgtttgaaactgaagttga |
6577539 |
T |
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| Q |
120 |
tcgtatcttttctactcctttaggtgcttgaaagttgaataatatgtttctacatgcattcatatatagtttttgttgtgtgtgtagacatgggattcat |
219 |
Q |
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| T |
6577538 |
tcgtatcttttctactcctttaggtgcttgaaagttg---aatatgtttctacatgcattcatatatagtttttgttgtgtgtgtagacatgggattcat |
6577442 |
T |
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| Q |
220 |
tgataatgacgtaaatcaaaattcatccgtgacnnnnnnnnnnnncaacctttgatagggtgtatttaatccaaaacccactcatgcatatgcatacaat |
319 |
Q |
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| T |
6577441 |
tgataatgacgtaaatcaaaattcatccgtgac--aaaaaaaaaacaacctttgatagggtgtatttaatccaaaacccactcatgcatatgcatacaat |
6577344 |
T |
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| Q |
320 |
ttcatattatatgcttcatgcactccatcgaagtacactttactttccaaatacatggaactacctatg |
388 |
Q |
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| T |
6577343 |
ttcatattatatgcttcatgcactccatcgaagtacactttactttccaaatacatggaactatctatg |
6577275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 34 - 148
Target Start/End: Original strand, 34243813 - 34243927
Alignment:
| Q |
34 |
aaagcttttgaagaaaaccaacctacagaaactagtgataattcaattaaaggcccaacaccgtttatgttcgaaactgaagttgatcgtatcttttcta |
133 |
Q |
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| T |
34243813 |
aaagtttttgaagaaaatcaacctacagagactaatgttggttcaattcgtggcccgacaccatttatgtttgaaactgaagttgatcgtatcttttcta |
34243912 |
T |
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| Q |
134 |
ctcctttaggtgctt |
148 |
Q |
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| T |
34243913 |
cgccattaggtgctt |
34243927 |
T |
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