View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15030_low_5 (Length: 366)
Name: NF15030_low_5
Description: NF15030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15030_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 14 - 312
Target Start/End: Complemental strand, 9500357 - 9500061
Alignment:
| Q |
14 |
ttgtttcatacacaaatcataaaatatatttttgataattgatatgtcaactgaagcttatgcagacaactcgagtaacttataatacatgcatataaat |
113 |
Q |
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| T |
9500357 |
ttgttacatacacaaatcataaaatatatttt-gataattgatatgtcaactgaagcttatgcagacaactcgagtaacttataatacatgcatataaat |
9500259 |
T |
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| Q |
114 |
gctcaaaaattgaagaaacaaaattgaaggcataatgttaaatcaatacgacaggtctaccaagtacaaactacacaacatatataagnnnnnnnnnnnn |
213 |
Q |
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|||||||||||||||||| ||| |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
9500258 |
gctcaaaaattgaagaaaaaaatttgaaggcgtaatgttaaatcaatacgacagggctaccaagtacaaactacacaacatatataagaaagaaaaaaga |
9500159 |
T |
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| Q |
214 |
nnnnnnnnnncataatagaagagggcttcaagtaaaacagaggacgtaaaagaatgcaaaaacagggggcggtagagtttaaattacacaacatcacac |
312 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
9500158 |
atagaaaaaacataatagaagagggcttcaagtaaaacagaggtagtaaaagaatgc-aaaacagggggcggtagagtttaaattacacaacatcacac |
9500061 |
T |
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