View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15030_low_6 (Length: 355)
Name: NF15030_low_6
Description: NF15030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15030_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 22 - 335
Target Start/End: Original strand, 3014978 - 3015291
Alignment:
| Q |
22 |
gccagtgcaatgcttgaaaagaaaccagagtatgctgctatattggcgtttcctgccagagtcactcctgaagcttggcaacttgcacataaattgggtg |
121 |
Q |
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| T |
3014978 |
gccagtgcaatgcttgaaaagaaaccagagtatgctgctatattggcgtttcctgccagagtcacccctgaagcttggcaacttgcacataaattgggtg |
3015077 |
T |
|
| Q |
122 |
tcaaaatttttatctccgataaaatgcatcatctatttgatcaatttaagaggtacaggaacaacattactcacatgaacaacaataaggatgagaacaa |
221 |
Q |
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| T |
3015078 |
tcaaaatatttatctccgataaaatgcatcatctatttgatcaatttaataggtacaaggacaacattactcacatgaacaacaataaggatgagaacaa |
3015177 |
T |
|
| Q |
222 |
gaaagattctgctgatgaggcctgcattctcaagatcatgcccaattctgtcttcaacaataaggattccattgttttgggagtagatatccttcaaggc |
321 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
3015178 |
gaaagattctgctgatgaggcctgcgttctcaagatcatgcccaattctgtcttcaacaataaggattccattgttttgggagtaaatatccttcaaggc |
3015277 |
T |
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| Q |
322 |
attttaaaggtatc |
335 |
Q |
| |
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|||||||||||||| |
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| T |
3015278 |
attttaaaggtatc |
3015291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 171; Significance: 9e-92; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 1 - 326
Target Start/End: Complemental strand, 40671840 - 40671533
Alignment:
| Q |
1 |
cataagaaggatgtggagaaggccagtgcaatgcttgaaaagaaaccagagtatgctgctatattggcgtttcctgccagagtcactcctgaagcttggc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||| ||||| |||| |||||||| |
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| T |
40671840 |
cataagaaggatgtggagaaggccagtgcaatgcttgaaaagaaaccagagtatgctgttgtgttggcgtttcctgccatggtcacccctggagcttggc |
40671741 |
T |
|
| Q |
101 |
aacttgcacataaattgggtgtcaaaatttttatctccgataaaatgcatcatctatttgatcaatttaagaggtacaggaacaacattactcacatgaa |
200 |
Q |
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| T |
40671740 |
aacttgcacacaaattgggtgtcaaaattttcatctccgataaaatgcatcatctatttgatcgatttaagacttacatgaacaacat------------ |
40671653 |
T |
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| Q |
201 |
caacaataaggatgagaacaagaaagattctgctgatgaggcctgcattctcaagatcatgcccaattctgtcttcaacaataaggattccattgttttg |
300 |
Q |
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|||||| | | | ||||||||||||||||||||||||||| |||||||||||| ||| |||| |||||||||| |||||||| ||||||||||| |
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| T |
40671652 |
------taaggaggcgcaaaagaaagattctgctgatgaggcctgcgttctcaagatcaagccaaattttgtcttcaaccataaggatcccattgttttg |
40671559 |
T |
|
| Q |
301 |
ggagtagatatccttcaaggcatttt |
326 |
Q |
| |
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||||||||| |||||||||||||||| |
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| T |
40671558 |
ggagtagatgtccttcaaggcatttt |
40671533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 1 - 335
Target Start/End: Original strand, 44607538 - 44607863
Alignment:
| Q |
1 |
cataagaaggatgtggagaaggccagtgcaatgcttgaaaagaaaccagagtatgctgctatattggcgtttcctgccagagtcactcctgaagcttggc |
100 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||||||||| ||| ||| || |||||||||||||| || || |||||| |||||||| | |
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| T |
44607538 |
cataagaaggatgtgatgaaggccagtgtaatgcttgaaaagaaacgagaatattctactatattggcgtttgatgtcaaagtcacctctgaagctaagg |
44607637 |
T |
|
| Q |
101 |
aacttgcacataaattgggtgtcaaaatttttatctccgataaaatgcatcatctatttgatcaatttaagaggtacaggaacaacattactcacatgaa |
200 |
Q |
| |
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|||||||| ||||||||||||| ||||||||||| |||||| || ||||||||||||||||||||| |||| | ||||| |
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| T |
44607638 |
aacttgcagataaattgggtgtgaaaatttttattgccgatattatttatcatctatttgatcaattta--aggt----------------ttacatggc |
44607719 |
T |
|
| Q |
201 |
caacaataaggatgagaacaagaaagattctgctgatgagg---------cctgcattctcaagatcatgcccaattctgtcttcaacaataaggattcc |
291 |
Q |
| |
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||||| |||||| ||||| |||||||| ||||||||||||| | ||| |||| |||||||| || |||| |||||||||||| |||||| | |
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| T |
44607720 |
caacattaaggaggagaaaaagaaagaatctgctgatgaggcagtctttccatgcgttctgaagatcataccaaattgtgtcttcaacaagaaggatccg |
44607819 |
T |
|
| Q |
292 |
attgttttgggagtagatatccttcaaggcattttaaaggtatc |
335 |
Q |
| |
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||| |||||||||| ||||||||| ||||||||||||||||||| |
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| T |
44607820 |
attattttgggagttgatatccttaaaggcattttaaaggtatc |
44607863 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 171
Target Start/End: Original strand, 44629044 - 44629214
Alignment:
| Q |
1 |
cataagaaggatgtggagaaggccagtgcaatgcttgaaaagaaaccagagtatgctgctatattggcgtttcctgccagagtcactcctgaagcttggc |
100 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||||| ||| |||||| |||||||||| ||| || || |||||| ||||||||| || |
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| T |
44629044 |
cataagaaggatgtgatgaaggccagtgtgatgcttgaaaagaaacgagaatatgctactatattggcatttgatgtcaaagtcacccctgaagctaggg |
44629143 |
T |
|
| Q |
101 |
aacttgcacataaattgggtgtcaaaatttttatctccgataaaatgcatcatctatttgatcaatttaag |
171 |
Q |
| |
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| |||||| | |||||||||| || |||||||| |||||| || ||||||||||||||||||||||| |
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| T |
44629144 |
atcttgcagaggaattgggtgtgaagatttttatagccgatatcatttatcatctatttgatcaatttaag |
44629214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 248 - 333
Target Start/End: Original strand, 44629282 - 44629367
Alignment:
| Q |
248 |
ttctcaagatcatgcccaattctgtcttcaacaataaggattccattgttttgggagtagatatccttcaaggcattttaaaggta |
333 |
Q |
| |
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|||| |||||| | || |||| |||||||||||| |||||| | |||||||||||||| ||||||||| ||||||||||||||||| |
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| T |
44629282 |
ttctgaagatcttaccaaattgtgtcttcaacaagaaggatccaattgttttgggagttgatatccttgaaggcattttaaaggta |
44629367 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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