View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15030_low_7 (Length: 335)

Name: NF15030_low_7
Description: NF15030
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15030_low_7
NF15030_low_7
[»] chr4 (6 HSPs)
chr4 (160-332)||(26416759-26416930)
chr4 (11-113)||(26416646-26416748)
chr4 (234-316)||(18475052-18475134)
chr4 (234-312)||(18480998-18481076)
chr4 (237-316)||(21697985-21698064)
chr4 (238-316)||(32752768-32752846)
[»] chr5 (4 HSPs)
chr5 (234-316)||(19154090-19154172)
chr5 (234-316)||(19159995-19160077)
chr5 (234-316)||(4253108-4253190)
chr5 (234-316)||(11576524-11576604)
[»] chr3 (5 HSPs)
chr3 (234-316)||(7450841-7450923)
chr3 (234-316)||(7458983-7459065)
chr3 (234-293)||(7649519-7649578)
chr3 (234-316)||(36839897-36839977)
chr3 (234-316)||(36835870-36835950)
[»] chr1 (2 HSPs)
chr1 (234-316)||(48638867-48638949)
chr1 (249-316)||(51983555-51983620)
[»] scaffold0248 (1 HSPs)
scaffold0248 (234-316)||(20012-20094)
[»] chr7 (1 HSPs)
chr7 (235-316)||(9937353-9937434)
[»] scaffold0067 (1 HSPs)
scaffold0067 (249-316)||(42249-42314)
[»] chr8 (1 HSPs)
chr8 (208-290)||(35158746-35158828)


Alignment Details
Target: chr4 (Bit Score: 125; Significance: 2e-64; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 160 - 332
Target Start/End: Original strand, 26416759 - 26416930
Alignment:
Q  160 gataatccactttgaaggcttcttttctaaatgagctactgtgagttaatttctttaaaaacgtaaacgatattctacttaaacaacgaaaacttaaatt 259  Q
    ||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||||||| ||||||  |||||||||||||||| |||||||||||    
T  26416759 gataatccactttgaag-cttcttttctaaatgagttattgtgagttaatttctttaaaaacgaaaacgactttctacttaaacaacggaaacttaaatt 26416857  T
Q  260 aaaggatcaaggcatacctccaaccattgctcctgtttaaagatgttgaggctcttcccattagggaaccaac 332  Q
    ||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||| |||||||||||||||    
T  26416858 aaaggatcaaggcatacctccaaccattgttcctgtttgaagatggtgaggctcttctcattagggaaccaac 26416930  T

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Target: chr4; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 11 - 113
Target Start/End: Original strand, 26416646 - 26416748
Alignment:
Q  11 cataggtattgaagaagatcactagatattatgaattgaccatatttatgacaagatcgttgtcttccacccaaatcccataagcaccatcacaaccatt 110  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||    
T  26416646 cataggtattgaagaagatcactagatattatgaattgaccatatttatgacaagatcgttgtcttccacccaaatcccataagcatcgtcacaaccatt 26416745  T
Q  111 tag 113  Q
    |||    
T  26416746 tag 26416748  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 234 - 316
Target Start/End: Complemental strand, 18475134 - 18475052
Alignment:
Q  234 ctacttaaacaacgaaaacttaaattaaaggatcaaggcatacctccaaccattgctcctgtttaaagatgttgaggctcttc 316  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| || |||| |||||||||||||    
T  18475134 ctacttaaacagcggaaacttaaattaaaggatcaaggcatacctccaaccattgctcctgcttgaagaagttgaggctcttc 18475052  T

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Target: chr4; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 234 - 312
Target Start/End: Complemental strand, 18481076 - 18480998
Alignment:
Q  234 ctacttaaacaacgaaaacttaaattaaaggatcaaggcatacctccaaccattgctcctgtttaaagatgttgaggct 312  Q
    ||||||||||| || |||||||||||||||||| ||||||||||||||||||||||||||| || |||| |||||||||    
T  18481076 ctacttaaacagcggaaacttaaattaaaggattaaggcatacctccaaccattgctcctgcttgaagaagttgaggct 18480998  T

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Target: chr4; HSP #5
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 237 - 316
Target Start/End: Complemental strand, 21698064 - 21697985
Alignment:
Q  237 cttaaacaacgaaaacttaaattaaaggatcaaggcatacctccaaccattgctcctgtttaaagatgttgaggctcttc 316  Q
    |||||||| || |||||||||||||||||||||||||||||| || |||||||||||| || |||| |||||||||||||    
T  21698064 cttaaacagcggaaacttaaattaaaggatcaaggcataccttcagccattgctcctgcttgaagaagttgaggctcttc 21697985  T

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Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 238 - 316
Target Start/End: Complemental strand, 32752846 - 32752768
Alignment:
Q  238 ttaaacaacgaaaacttaaattaaaggatcaaggcatacctccaaccattgctcctgtttaaagatgttgaggctcttc 316  Q
    ||||||| || |||||||||||||||||| ||||||||||| ||  ||||||||||| || |||| |||||||||||||    
T  32752846 ttaaacagcggaaacttaaattaaaggattaaggcataccttcagtcattgctcctgcttgaagaagttgaggctcttc 32752768  T

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Target: chr5 (Bit Score: 59; Significance: 6e-25; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 234 - 316
Target Start/End: Original strand, 19154090 - 19154172
Alignment:
Q  234 ctacttaaacaacgaaaacttaaattaaaggatcaaggcatacctccaaccattgctcctgtttaaagatgttgaggctcttc 316  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||| || |||| |||||||||||||    
T  19154090 ctacttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcctgcttgaagaagttgaggctcttc 19154172  T

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Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 234 - 316
Target Start/End: Original strand, 19159995 - 19160077
Alignment:
Q  234 ctacttaaacaacgaaaacttaaattaaaggatcaaggcatacctccaaccattgctcctgtttaaagatgttgaggctcttc 316  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||| || |||| |||||||||||||    
T  19159995 ctacttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcctgcttgaagaagttgaggctcttc 19160077  T

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Target: chr5; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 234 - 316
Target Start/End: Original strand, 4253108 - 4253190
Alignment:
Q  234 ctacttaaacaacgaaaacttaaattaaaggatcaaggcatacctccaaccattgctcctgtttaaagatgttgaggctcttc 316  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||||| ||| | |||||| || |||| |||||||||||||    
T  4253108 ctacttaaacaacggaaatttaaattaaaggatcaaggcatacctccagccactactcctgcttgaagaagttgaggctcttc 4253190  T

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Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 234 - 316
Target Start/End: Complemental strand, 11576604 - 11576524
Alignment:
Q  234 ctacttaaacaacgaaaacttaaattaaaggatcaaggcatacctccaaccattgctcctgtttaaagatgttgaggctcttc 316  Q
    ||||||||||| || |||||||||||||||||| ||| ||||||||   |||||||||||| || |||| |||||||||||||    
T  11576604 ctacttaaacagcggaaacttaaattaaaggattaagacatacctc--gccattgctcctgcttgaagaagttgaggctcttc 11576524  T

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Target: chr3 (Bit Score: 59; Significance: 6e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 234 - 316
Target Start/End: Complemental strand, 7450923 - 7450841
Alignment:
Q  234 ctacttaaacaacgaaaacttaaattaaaggatcaaggcatacctccaaccattgctcctgtttaaagatgttgaggctcttc 316  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||| || |||| |||||||||||||    
T  7450923 ctacttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcctgcttgaagaagttgaggctcttc 7450841  T

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Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 234 - 316
Target Start/End: Complemental strand, 7459065 - 7458983
Alignment:
Q  234 ctacttaaacaacgaaaacttaaattaaaggatcaaggcatacctccaaccattgctcctgtttaaagatgttgaggctcttc 316  Q
    ||||||||||| || ||| ||||||||||||||||||||||||||||| |||||||||||| || |||| |||||||||||||    
T  7459065 ctacttaaacagcggaaatttaaattaaaggatcaaggcatacctccagccattgctcctgcttgaagaagttgaggctcttc 7458983  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 234 - 293
Target Start/End: Complemental strand, 7649578 - 7649519
Alignment:
Q  234 ctacttaaacaacgaaaacttaaattaaaggatcaaggcatacctccaaccattgctcct 293  Q
    |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||    
T  7649578 ctacttaaacaacggaaacttaaattaaacgatcaaggcatacctccaaccattgctcct 7649519  T

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Target: chr3; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 234 - 316
Target Start/End: Complemental strand, 36839977 - 36839897
Alignment:
Q  234 ctacttaaacaacgaaaacttaaattaaaggatcaaggcatacctccaaccattgctcctgtttaaagatgttgaggctcttc 316  Q
    ||||||||||| || ||||||||||||  ||||||||||||||||||| |||||||||||| || |||| |||||||||||||    
T  36839977 ctacttaaacagcggaaacttaaatta--ggatcaaggcatacctccagccattgctcctgcttgaagaagttgaggctcttc 36839897  T

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Target: chr3; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 234 - 316
Target Start/End: Complemental strand, 36835950 - 36835870
Alignment:
Q  234 ctacttaaacaacgaaaacttaaattaaaggatcaaggcatacctccaaccattgctcctgtttaaagatgttgaggctcttc 316  Q
    ||||||||||| || ||||||||||||  ||||||||||||||||||| |||||||||||| || |||| |||||| ||||||    
T  36835950 ctacttaaacagcggaaacttaaatta--ggatcaaggcatacctccagccattgctcctgcttgaagaagttgagtctcttc 36835870  T

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Target: chr1 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 234 - 316
Target Start/End: Complemental strand, 48638949 - 48638867
Alignment:
Q  234 ctacttaaacaacgaaaacttaaattaaaggatcaaggcatacctccaaccattgctcctgtttaaagatgttgaggctcttc 316  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||| |||||||||||| || |||| |||||||||||||    
T  48638949 ctacttaaacagcggaaacttaaattaaaggatcaaggcatacctccagccattgctcctgcttgaagaagttgaggctcttc 48638867  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 316
Target Start/End: Original strand, 51983555 - 51983620
Alignment:
Q  249 aaacttaaattaaaggatcaaggcatacctccaaccattgctcctgtttaaagatgttgaggctcttc 316  Q
    ||||||||||||  ||||||||||||||||||  |||||||| ||| || |||| |||||||||||||    
T  51983555 aaacttaaatta--ggatcaaggcatacctcctgccattgcttctgcttgaagaagttgaggctcttc 51983620  T

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Target: scaffold0248 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0248
Description:

Target: scaffold0248; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 234 - 316
Target Start/End: Complemental strand, 20094 - 20012
Alignment:
Q  234 ctacttaaacaacgaaaacttaaattaaaggatcaaggcatacctccaaccattgctcctgtttaaagatgttgaggctcttc 316  Q
    ||||||||||| || |||||||||||||||||| ||||||||||| |  |||||||||||  || |||| |||||||||||||    
T  20094 ctacttaaacagcggaaacttaaattaaaggattaaggcataccttccgccattgctcctacttgaagaagttgaggctcttc 20012  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 235 - 316
Target Start/End: Complemental strand, 9937434 - 9937353
Alignment:
Q  235 tacttaaacaacgaaaacttaaattaaaggatcaaggcatacctccaaccattgctcctgtttaaagatgttgaggctcttc 316  Q
    |||||||||| |  |||||||| |||||||||||| | |||||| ||||| |||||| ||||| ||||||||||| ||||||    
T  9937434 tacttaaacagcagaaacttaagttaaaggatcaaagtatacctacaaccgttgctcttgtttgaagatgttgagactcttc 9937353  T

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Target: scaffold0067 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0067
Description:

Target: scaffold0067; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 316
Target Start/End: Complemental strand, 42314 - 42249
Alignment:
Q  249 aaacttaaattaaaggatcaaggcatacctccaaccattgctcctgtttaaagatgttgaggctcttc 316  Q
    ||||||||||||  ||||||||||||| ||||| |||||||||||| || |||  |||||||||||||    
T  42314 aaacttaaatta--ggatcaaggcatatctccagccattgctcctgcttgaagtagttgaggctcttc 42249  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 208 - 290
Target Start/End: Original strand, 35158746 - 35158828
Alignment:
Q  208 atttctttaaaaacgtaaacgatattctacttaaacaacgaaaacttaaattaaaggatcaaggcatacctccaaccattgct 290  Q
    |||||||||||| | |||| || ||| | ||||||||| | |||||||||||||| ||  |||||||||||||  ||||||||    
T  35158746 atttctttaaaaccataaaagaaattatgcttaaacaagggaaacttaaattaaaagacaaaggcatacctcccgccattgct 35158828  T

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