View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15031_low_3 (Length: 379)
Name: NF15031_low_3
Description: NF15031
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15031_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 18 - 369
Target Start/End: Original strand, 25064070 - 25064422
Alignment:
| Q |
18 |
tgaagaactgcaattaagttgccttcaacatgcatatgttcaataccttaggaaaaattctatccaaaacttggagagcatgccttgaattccaagcagc |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25064070 |
tgaagaactgcaattaagttgccttcaacatgcatatgttcaataccttaggaaaaattctatccaaaacttggagagcatgccttgaattccaagcagc |
25064169 |
T |
|
| Q |
118 |
atatcccctcaaaactatatcagcctacatcaaatcaatgttaggttttccnnnnnnn-ttgtgagagtgatataagttttataatttctaatatttgcc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |
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| T |
25064170 |
atatcccctcaaaactatatcagcctacatcaaatcaatgttaggttttccaaaaaaaattgtgacagtgatataagttttataatttctaatatttgcc |
25064269 |
T |
|
| Q |
217 |
tatatatgtgattatctaaactcttatttttcataggcaatatttaattataagtgaaaaatttataagtacaccttatattttgaaagactgaagagac |
316 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
25064270 |
tatatatgtgattatctaaactcttatttttcataggcaatatttaattataagtgaaaaatttataagtacaccttatattttgaaagaccgaagagac |
25064369 |
T |
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| Q |
317 |
ttttgatattctagaacatagattcgaactcgttttttctcatttggtctgtg |
369 |
Q |
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| T |
25064370 |
ttttgatattctagaacatagattcgaactcgttttttttcatttggtgtgtg |
25064422 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 223 - 369
Target Start/End: Original strand, 25085702 - 25085848
Alignment:
| Q |
223 |
tgtgattatctaaactcttatttttcataggcaatatttaattataagtgaaaaatttataagtacaccttatattttgaaagactgaagagacttttga |
322 |
Q |
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| T |
25085702 |
tgtgattatctaaaatcttatttttcataggcaatatttaattataagtgaaaaatttataagtacaccttatattttgaaagaccgaaaagacttttga |
25085801 |
T |
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| Q |
323 |
tattctagaacatagattcgaactcgttttttctcatttggtctgtg |
369 |
Q |
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| T |
25085802 |
tattctagaacatagattcgaactcgttttttcttatttggtgtgtg |
25085848 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 56 - 223
Target Start/End: Original strand, 25085492 - 25085664
Alignment:
| Q |
56 |
ttcaataccttaggaaaaattctatccaaaacttggagagcatgccttgaattccaagcagcatatcccctcaaaactatatcagcctacatcaaatcaa |
155 |
Q |
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||||||||||||||||| ||| ||||||||||||| |||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |
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| T |
25085492 |
ttcaataccttaggaaatattttatccaaaacttgcagagcacgccttgaattccaagcagcatatccccgcaaaactatatcagcctacattaaatcaa |
25085591 |
T |
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| Q |
156 |
tgttaggttttccnnnnnnnttgtgagagtgatataag-----ttttataatttctaatatttgcctatatat |
223 |
Q |
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| T |
25085592 |
tgttaggtcttccaaaaaatttgtgagagtgatataagtttaattttataatttctaataattgcatatatat |
25085664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 56 - 159
Target Start/End: Original strand, 25091386 - 25091489
Alignment:
| Q |
56 |
ttcaataccttaggaaaaattctatccaaaacttggagagcatgccttgaattccaagcagcatatcccctcaaaactatatcagcctacatcaaatcaa |
155 |
Q |
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||||||||||| ||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25091386 |
ttcaataccttgggaaatattttatccaaaacttggagagcatgccttgaagtccaagcagcatatcccctcaaaactatatcagcctacatcaaatcaa |
25091485 |
T |
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| Q |
156 |
tgtt |
159 |
Q |
| |
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|||| |
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| T |
25091486 |
tgtt |
25091489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 37 - 159
Target Start/End: Original strand, 25073824 - 25073946
Alignment:
| Q |
37 |
tgccttcaacatgcatatgttcaataccttaggaaaaattctatccaaaacttggagagcatgccttgaattccaagcagcatatcccctcaaaactata |
136 |
Q |
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||||||||||| ||||| ||||||||| | ||| ||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||| |
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| T |
25073824 |
tgccttcaacaatcatatacacaataccttggaaaatattttatccaaaacttggagagcatgccttgaattccaaccagcatatccccgtaaaagtata |
25073923 |
T |
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| Q |
137 |
tcagcctacatcaaatcaatgtt |
159 |
Q |
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||||||| | ||||| ||||||| |
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| T |
25073924 |
tcagcctgcgtcaaaccaatgtt |
25073946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 176 - 250
Target Start/End: Original strand, 25074029 - 25074103
Alignment:
| Q |
176 |
ttgtgagagtgatataagttttataatttctaatatttgcctatatatgtgattatctaaactcttatttttcat |
250 |
Q |
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| T |
25074029 |
ttgtgatagtgatataagttttaaaatttctaatatttgccaatatatgtgattatctaaaatcttatttttcat |
25074103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 176 - 278
Target Start/End: Original strand, 25091574 - 25091673
Alignment:
| Q |
176 |
ttgtgagagtgatataagttttataatttctaatatttgcctatatatgtgattatctaaactcttatttttcataggcaatatttaattataagtgaaa |
275 |
Q |
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|||||| |||||||||||||||| ||| |||||||||| || ||||||||||| ||||||| ||| |||||||||||| |||||| |||||||||||| |
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| T |
25091574 |
ttgtgatagtgatataagttttaaaatgtctaatattttccaatatatgtgatcatctaaaatctcatttttcatagggaatatt---ttataagtgaaa |
25091670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 57 - 147
Target Start/End: Original strand, 25059322 - 25059412
Alignment:
| Q |
57 |
tcaataccttaggaaaaattctatccaaaacttggagagcatgccttgaattccaagcagcatatcccctcaaaactatatcagcctacat |
147 |
Q |
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| T |
25059322 |
tcaataccttaggaaaaatatcatccacaacttgtagaccacgcgttgaattccaaccagcatatccccgcaaaactatatcaacctacat |
25059412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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