View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15032_high_3 (Length: 310)
Name: NF15032_high_3
Description: NF15032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15032_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 243; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 22 - 296
Target Start/End: Original strand, 2420391 - 2420665
Alignment:
| Q |
22 |
ggagtttacgtttgtgattgtggcttttatgtgcacatgatatttcctcttcttcttcaacccctcatcttaattcattcgttgtctttccattaacccg |
121 |
Q |
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| T |
2420391 |
ggagtttacgtttgtgattgtggcttttatgtgcacatgatatttcctcttcttcttcaacccctcatcttaattcattcgttgtctttccattaacctg |
2420490 |
T |
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| Q |
122 |
ttaatttttcaatccttaattaaaccaatgggtggagcttcaatgatttgtgatttggttgtgggtttgcagcagtttctaatgtctagtttaatggaag |
221 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| |
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| T |
2420491 |
ttaatttttcaatccttaattaaaccaatgggtgcagcttcaatgatttgtgatttggttgtgggtttgcatcagtttctgatgcctagtttaatggaag |
2420590 |
T |
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| Q |
222 |
gatttaaagaggaaagaaggattgtaagagaataagggtgtgatatgttttgagtttgatagaggatgaagtaga |
296 |
Q |
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| T |
2420591 |
gatttaaagaggaaagaaggattgggagagaataagggtgtgatatgttttgagtttgacagaggatgaagtaga |
2420665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 22 - 296
Target Start/End: Original strand, 10615548 - 10615809
Alignment:
| Q |
22 |
ggagtttacgtttgtgattgtggcttttatgtgcacatgatatttcctcttcttcttcaacccctcatcttaattcattcgttgtctttccattaacccg |
121 |
Q |
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| T |
10615548 |
ggagtttacgtttgtgattatggcttttatgtgcacatgatattccctcttcttcttcaacccctcgtcttaattcattcgttgtctttccattaacacg |
10615647 |
T |
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| Q |
122 |
ttaatttttcaatccttaattaaaccaatgggtggagcttcaatgatttgtgatttggttgtgggtttgcagcagtttctaatgtctagtttaatggaag |
221 |
Q |
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| T |
10615648 |
ttaatttttcaatccttaattaaaccaatgggtgcagcttcaatgatttgtgatttggttgtgggtttgcagcagtttctgatgcctagtttaat----- |
10615742 |
T |
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| Q |
222 |
gatttaaagaggaaagaaggattgtaagagaataagggtgtgatatgttttgagtttgatagaggatgaagtaga |
296 |
Q |
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| T |
10615743 |
--------gaggaaagaaggattgggagagaataagggtgtgatatgttttgagtttgatagaggatgaagtaga |
10615809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 235; Significance: 1e-130; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 22 - 296
Target Start/End: Complemental strand, 46469774 - 46469501
Alignment:
| Q |
22 |
ggagtttacgtttgtgattgtggcttttatgtgcacatgatatttcctcttcttcttcaacccctcatcttaattcattcgttgtctttccattaacccg |
121 |
Q |
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| T |
46469774 |
ggagtttacgtt-gtgattgtggcttttatgtgcacatgatatttcctcttcttcttcaacccctcatcttaattcattcggtgtctttccattaacccg |
46469676 |
T |
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| Q |
122 |
ttaatttttcaatccttaattaaaccaatgggtggagcttcaatgatttgtgatttggttgtgggtttgcagcagtttctaatgtctagtttaatggaag |
221 |
Q |
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| T |
46469675 |
ttaatttttcaatccttaattaaaccaatgggtgcagcttcaatgatttgtgatttggttgtgggtttgcagcagtttctgatgcctagtttaatggaag |
46469576 |
T |
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| Q |
222 |
gatttaaagaggaaagaaggattgtaagagaataagggtgtgatatgttttgagtttgatagaggatgaagtaga |
296 |
Q |
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| T |
46469575 |
gatttaaagaggaaagaaggattgggagagaataagggtgtgatatattttgagtttgacagaggatgaagtaga |
46469501 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 106 - 171
Target Start/End: Original strand, 41698657 - 41698722
Alignment:
| Q |
106 |
tctttccattaacccgttaatttttcaatccttaattaaaccaatgggtggagcttcaatgatttg |
171 |
Q |
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| T |
41698657 |
tctttccattaactcattaatttttcaatcattaatcaaacaaatgggtgcagcttcaatgatttg |
41698722 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 168 - 205
Target Start/End: Original strand, 41699348 - 41699385
Alignment:
| Q |
168 |
tttgtgatttggttgtgggtttgcagcagtttctaatg |
205 |
Q |
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| T |
41699348 |
tttgtgatttggttgtgggtttgcagcggtttccaatg |
41699385 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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