View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15032_high_4 (Length: 300)

Name: NF15032_high_4
Description: NF15032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15032_high_4
NF15032_high_4
[»] chr3 (5 HSPs)
chr3 (18-290)||(10821281-10821553)
chr3 (18-175)||(1629260-1629417)
chr3 (18-170)||(1623089-1623241)
chr3 (18-170)||(1605967-1606119)
chr3 (174-290)||(1629090-1629211)
[»] chr7 (1 HSPs)
chr7 (18-166)||(18780787-18780935)


Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 18 - 290
Target Start/End: Original strand, 10821281 - 10821553
Alignment:
Q  18 ggttcatcaacaacaaacagggtaaattggcctggttatcatgtgataacaaacccaaaggaagcatcaaagtttacggttgctggactccttgctggtc 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10821281 ggttcatcaacaacaaacagggtaaattggcctggttatcatgtgataacaaacccaaaggaagcatcaaagtttacggttgctggactccttgctggtc 10821380  T
Q  118 caacatggttggctaaaactactgtgccatttacatctggtctttgatcatttgtattgtaattaaattcattgtaatttttgtaagaacatgagtcaat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10821381 caacatggttggctaaaactactgtgccatttacatctggtctttgatcatttgtattgtaattaaattcattgtaatttttgtaagaacatgagtcaat 10821480  T
Q  218 attctttaatttgtatattgagagagatattattattcatattcctttgtacaactttacaagttcacctttg 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10821481 attctttaatttgtatattgagagagatattattattcatattcctttgtacaactttacaagttcacctttg 10821553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 1629417 - 1629260
Alignment:
Q  18 ggttcatcaacaacaaacagggtaaattggcctggttatcatgtgataacaaacccaaaggaagcatcaaagtttacggttgctggactccttgctggtc 117  Q
    |||||||||||| |||| ||||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  1629417 ggttcatcaacagcaaatagggtgaaatggcctggttatcatgtgatatcaaacccaaaggaagcatcaaagtttacggttgctggactccttgctggac 1629318  T
Q  118 caacatggttggctaaaactactgtgccatttacatctggtctttgatcatttgtatt 175  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  1629317 caacatggttggctacaactactgtgccatttacatctggtctttgatcatttgtatt 1629260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 1623241 - 1623089
Alignment:
Q  18 ggttcatcaacaacaaacagggtaaattggcctggttatcatgtgataacaaacccaaaggaagcatcaaagtttacggttgctggactccttgctggtc 117  Q
    ||||||||||||||||| || ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  1623241 ggttcatcaacaacaaatagagtaaaatggcctggttatcatgtgataacaaaccgaaaggaagcatcaaagtttacggttgctggactccttgctggac 1623142  T
Q  118 caacatggttggctaaaactactgtgccatttacatctggtctttgatcattt 170  Q
    ||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  1623141 caacatggttggctacaactaccgtgccatttacatctggtctttgatcattt 1623089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 18 - 170
Target Start/End: Complemental strand, 1606119 - 1605967
Alignment:
Q  18 ggttcatcaacaacaaacagggtaaattggcctggttatcatgtgataacaaacccaaaggaagcatcaaagtttacggttgctggactccttgctggtc 117  Q
    |||||||||||| |||| || ||||| ||||||||||||||||||||| ||||||| || |||||||||||||||||||||||||||||||||||||| |    
T  1606119 ggttcatcaacagcaaatagagtaaaatggcctggttatcatgtgatatcaaaccctaatgaagcatcaaagtttacggttgctggactccttgctggac 1606020  T
Q  118 caacatggttggctaaaactactgtgccatttacatctggtctttgatcattt 170  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  1606019 caacatggttggctacaactactgtgccatttacatctggtctttgatcattt 1605967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 174 - 290
Target Start/End: Complemental strand, 1629211 - 1629090
Alignment:
Q  174 ttgtaattaaattcattgtaatttttgtaagaacatgagtcaatattctttaatttgtatattgagagagatattattattcatattc-----ctttgta 268  Q
    ||||||||||||||||||||||| ||  ||||| ||| |||||||||||||||||||||||||||||||||||| |||||||||||||      ||||||    
T  1629211 ttgtaattaaattcattgtaattcttaaaagaaaatgtgtcaatattctttaatttgtatattgagagagatataattattcatattctttaattttgta 1629112  T
Q  269 caactttacaagttcacctttg 290  Q
    | |||||||||||||| |||||    
T  1629111 ctactttacaagttcaactttg 1629090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 105; Significance: 2e-52; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 18 - 166
Target Start/End: Complemental strand, 18780935 - 18780787
Alignment:
Q  18 ggttcatcaacaacaaacagggtaaattggcctggttatcatgtgataacaaacccaaaggaagcatcaaagtttacggttgctggactccttgctggtc 117  Q
    |||||||||||| |||| || ||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| || |||| |    
T  18780935 ggttcatcaacagcaaatagagtaaaatggcctggttatcatgcgataacaaaccctaaggaagcatcaaagtttacggttgctggactcattactggac 18780836  T
Q  118 caacatggttggctaaaactactgtgccatttacatctggtctttgatc 166  Q
    |||||||| |||||| |||||||||||||||||||||||||||||||||    
T  18780835 caacatggctggctacaactactgtgccatttacatctggtctttgatc 18780787  T

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