View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15032_high_5 (Length: 250)
Name: NF15032_high_5
Description: NF15032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15032_high_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 166; Significance: 6e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 4 - 239
Target Start/End: Original strand, 24530412 - 24530647
Alignment:
| Q |
4 |
tttttcatgtttatccaaccatttaaggattgtatcccaattttcannnnnnnnnncttcattgaattgtagtgaaggtggcaataatccaactggaatc |
103 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||| || |||||||||||||||||||||||| |
|
|
| T |
24530412 |
tttttcatgtttatccaaccatttaaggattgtatcccaattttcatcatttttttcttcgccgatctgtagcgacggtggcaataatccaactggaatc |
24530511 |
T |
|
| Q |
104 |
acttttttcctgcatagattttcaattgattctagagatttaccttcaatctccatgcaacttcttgcagcaataaaatcagcaccaaaaagagtttctt |
203 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24530512 |
acttttttcttgcatagattttcaattaattctagaaatttaccttcaatctccatgcaacttcttgcagcaataaaatcagcaccaaaaagagtttctt |
24530611 |
T |
|
| Q |
204 |
tgaccctgaacacatctgtaactccagattcatttt |
239 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
24530612 |
tgaccctgaacacatctgtaactccagattcatttt |
24530647 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 239
Target Start/End: Complemental strand, 24543474 - 24543236
Alignment:
| Q |
1 |
ccttttttcatgtttatccaaccatttaaggattgtatcccaattttcannnnnnnnnncttcattgaattgtagtgaaggtggcaataatccaactgga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| || ||||| || ||||||||||||||||||||| |
|
|
| T |
24543474 |
ccttttttcatgtttatccaaccatttaaggattgtatcccaattttcatcatttttttcttcgccgatctgtagcgacggtggcaataatccaactgga |
24543375 |
T |
|
| Q |
101 |
atcacttttttcctgcatagattttcaattgattctagagatttaccttcaatctccatgcaacttcttgcagcaataaaatcagcaccaaaaagagttt |
200 |
Q |
| |
|
|||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
24543374 |
atcacttttttcttgcatagattttcaattaattctagatatttaccttcaatctccatgcaacttcttgcagcaataaaatcagcaccaaaaaggattt |
24543275 |
T |
|
| Q |
201 |
ctttgaccctgaacacatctgtaactccagattcatttt |
239 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||| |
|
|
| T |
24543274 |
ttttgaccctaaacatatctgtaactccagattcatttt |
24543236 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University