View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15032_low_1 (Length: 453)
Name: NF15032_low_1
Description: NF15032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15032_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 155; Significance: 4e-82; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 62 - 248
Target Start/End: Complemental strand, 9335606 - 9335420
Alignment:
| Q |
62 |
ttgtttcattatatgtgttgaagttgatctttagtctttctcctaattatttggcatgttcgttgaattcattccctgtcatatttcaactagttttgca |
161 |
Q |
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| T |
9335606 |
ttgtttcattatatgtgttgaagttgatcttaagtgtttctcctaattatttggcatgtcagttgaattcattccctgtcatatttcaacttgttttgca |
9335507 |
T |
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| Q |
162 |
gttagagcaaatcacattagtttaagaaactgaccaaatggtataagtgtcacctaaaaatgttcctttctatcttttgaattgaga |
248 |
Q |
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| T |
9335506 |
gttagagcaaatcactttagtttaagaaactgaccaaatggtatcagtgtcatctaaaaatgttcctttctatcttttgaattgaga |
9335420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 339 - 436
Target Start/End: Complemental strand, 9335291 - 9335181
Alignment:
| Q |
339 |
acttttccagacaacatgtttagcaatgaactcctaattcttaattacatattcatatg-------------aaaagtggttgaatttggtttgttatgt |
425 |
Q |
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| T |
9335291 |
acttttccagacaacatgtttagcaatgaatttctaattcttaattacatattcagatgaaaagatgctggaaaaagtggttgaatttggtttgttatgt |
9335192 |
T |
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| Q |
426 |
tatgttatttt |
436 |
Q |
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| T |
9335191 |
tatgttatttt |
9335181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 344 - 436
Target Start/End: Complemental strand, 9329480 - 9329375
Alignment:
| Q |
344 |
tccagacaacatgtttagcaatgaactcctaattcttaattacatattcatat-------------gaaaagtggttgaatttggtttgttatgttatgt |
430 |
Q |
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| T |
9329480 |
tccagacaacatgtttagcattgaactcataattcttaattacatattcaaatgaaaagatgctgggaaaagtggttgaatttggtttgttatgttatgt |
9329381 |
T |
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| Q |
431 |
tatttt |
436 |
Q |
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|||||| |
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| T |
9329380 |
tatttt |
9329375 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 142 - 250
Target Start/End: Complemental strand, 9405864 - 9405755
Alignment:
| Q |
142 |
atatttcaactagttt-tgcagttagagcaaatcacattagtttaagaaactgaccaaatggtataagtgtcacctaaaaatgttcctttctatcttttg |
240 |
Q |
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|||||||||| ||||| |||| |||||| |||| | | || |||||||||||| ||||||||||| |||||| ||||||||| |||| |||||||||| |
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| T |
9405864 |
atatttcaacaagtttatgcaattagagaaaataaaaataatttaagaaactggccaaatggtattagtgtctcctaaaaataatcctcgctatcttttg |
9405765 |
T |
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| Q |
241 |
aattgagatt |
250 |
Q |
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| T |
9405764 |
aattgtgatt |
9405755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 142 - 245
Target Start/End: Complemental strand, 9424111 - 9424007
Alignment:
| Q |
142 |
atatttcaactagttt-tgcagttagagcaaatcacattagtttaagaaactgaccaaatggtataagtgtcacctaaaaatgttcctttctatcttttg |
240 |
Q |
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|||||||||| ||||| |||| |||||| |||| | | || |||||||||||| ||||||||||| |||||| ||||||||| |||| |||||||||| |
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| T |
9424111 |
atatttcaacaagtttatgcaattagagaaaataaaaataatttaagaaactggccaaatggtattagtgtctcctaaaaataatcctcgctatcttttg |
9424012 |
T |
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| Q |
241 |
aattg |
245 |
Q |
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||||| |
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| T |
9424011 |
aattg |
9424007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 111 - 205
Target Start/End: Complemental strand, 9394565 - 9394470
Alignment:
| Q |
111 |
tttggcatgttcgttgaattcattccctgtcatatttcaactagttt-tgcagttagagcaaatcacattagtttaagaaactgaccaaatggtat |
205 |
Q |
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| T |
9394565 |
tttggcatggtaattgaatttattccctcccatatttcaacaagtttatgcaattagaggaaatcaaaataatttaagaaactggccaaatggtat |
9394470 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 142 - 190
Target Start/End: Original strand, 9696977 - 9697026
Alignment:
| Q |
142 |
atatttcaactagttt-tgcagttagagcaaatcacattagtttaagaaa |
190 |
Q |
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| T |
9696977 |
atatttcaactagcttatgcagttagagcaaatcaaaatagtttaagaaa |
9697026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 161 - 238
Target Start/End: Complemental strand, 4426746 - 4426670
Alignment:
| Q |
161 |
agttagagcaaatcacattagtttaagaaactgaccaaatggtataagtgtcacctaaaaatgttcctttctatcttt |
238 |
Q |
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| T |
4426746 |
agttaaagcaaatcaaaatagttta-gaaactggccaaatggtatcagtgtcccttaaaaatgtcccttgctatcttt |
4426670 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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