View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15032_low_2 (Length: 340)
Name: NF15032_low_2
Description: NF15032
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15032_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 253; Significance: 1e-140; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 5 - 325
Target Start/End: Original strand, 454951 - 455264
Alignment:
| Q |
5 |
tgggtagattatactatcaccaccttatctatcctttcctcttatctaaagtctattaagtaatttattgtttctattccnnnnnnncacaggagaagag |
104 |
Q |
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| T |
454951 |
tgggtatattttactatcaccaccttatctatcctttcctcttatctaaagtttattaagtaatttattgtttctattcctttttttcacaggagaa--- |
455047 |
T |
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| Q |
105 |
aaactctcgctcttattccttaaatttaacaagtttttcctggattttcatgacctcactaattgggtttgtttcctttttctttttcttctcaatatga |
204 |
Q |
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| T |
455048 |
--actctcgctcttattccttaaatttaacaagtttttcctggattttcatgacctcactaattgggtttgtttcctttttctttttcttctcaatatga |
455145 |
T |
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| Q |
205 |
atatggtgcttatcgttatgatgtgaaattgataaaaagttgactcttttatgtttatttttgttgggatattttgcagcattacgttatatcaaaattt |
304 |
Q |
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| T |
455146 |
at--ggtgcttatcgttatgatgtgaaattgataaaaagttgactcttttatgtttatttttgttgggatattttgcagcattactttatatcaaaattt |
455243 |
T |
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| Q |
305 |
atattttgagggtctatatct |
325 |
Q |
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| T |
455244 |
atattttgagggtctatatct |
455264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 466750 - 466828
Alignment:
| Q |
102 |
gagaaactctcgctcttattccttaaatttaacaagtttttcctggattttcatgacctcactaattgggtttgtttcc |
180 |
Q |
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| T |
466750 |
gagaaactctggctcatattccttgaatttaaggagtttttccttgattttcatgacctcactaattgggtttgtttcc |
466828 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 266 - 326
Target Start/End: Original strand, 467485 - 467545
Alignment:
| Q |
266 |
tgttgggatattttgcagcattacgttatatcaaaatttatattttgagggtctatatctt |
326 |
Q |
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| T |
467485 |
tgttgggatatattgcagcattacattgaatcaaaatttatattttgagggtctatatctt |
467545 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 102 - 162
Target Start/End: Original strand, 474235 - 474295
Alignment:
| Q |
102 |
gagaaactctcgctcttattccttaaatttaacaagtttttcctggattttcatgacctca |
162 |
Q |
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| T |
474235 |
gagaaactctgcctcttattccttaaatttaaggagtttttccttgattttcatgacctca |
474295 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 446016 - 446101
Alignment:
| Q |
102 |
gagaaactctcgctcttattccttaaatttaacaagtttttcctggattttcatgacctcactaattgggtttgtttcctttttct |
187 |
Q |
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|||||||||| ||| || |||||||| |||| |||||||||||||| |||||||| ||||||||| ||||||||| | |||||| |
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| T |
446016 |
gagaaactctgcctcctactccttaaacttaaggagtttttcctggatattcatgacttcactaattaggtttgttttcattttct |
446101 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 479701 - 479779
Alignment:
| Q |
102 |
gagaaactctcgctcttattccttaaatttaacaagtttttcctggattttcatgacctcactaattgggtttgtttcc |
180 |
Q |
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| T |
479701 |
gagaaattctggctcttattccttaaatttaaggagtttttctttgttattcttaacctcactaattgggttagtttcc |
479779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 325
Target Start/End: Original strand, 446507 - 446538
Alignment:
| Q |
294 |
tatcaaaatttatattttgagggtctatatct |
325 |
Q |
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| T |
446507 |
tatcaaaatttatattttgagggtctatatct |
446538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 119 - 179
Target Start/End: Complemental strand, 27493602 - 27493542
Alignment:
| Q |
119 |
attccttaaatttaacaagtttttcctggattttcatgacctcactaattgggtttgtttc |
179 |
Q |
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| T |
27493602 |
attccttaaatttaaagagtttttcttggatattcatcacttcactagttgggtttgtttc |
27493542 |
T |
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