View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15033_high_1 (Length: 580)
Name: NF15033_high_1
Description: NF15033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15033_high_1 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr1 (3 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 18 - 580
Target Start/End: Complemental strand, 53557562 - 53557007
Alignment:
| Q |
18 |
cttccaatgcttatgtaaaggctgcaaatgatgttgtcttcttcttcagtaaatccaccatgtttgatattaggtctcaagtaatttaaccacctaagtc |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53557562 |
cttccaatgcttatgtaaaggctgcaaatgatgttgtcttcttcttcagtaaatccaccatgtttgatattaggtctcaagtaatttaaccacctaagtc |
53557463 |
T |
|
| Q |
118 |
tgcaactctttccacatctcttgagccctgtgaattttttgtaattatcccattaattagtttgcactaatccaagattactattataatcaaaatagtt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
53557462 |
tgcaactctttccacatctcttgagccctgtgaattttttgtaattatcccattaattagtttgcactaaaccaagattactattataatcaaaatagtt |
53557363 |
T |
|
| Q |
218 |
tcaagtttccatatactacaaaattagagatagatttcacataattttctcgtagtatacaattttcttgtttgatcagcaaacaaataattttattcaa |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53557362 |
tcaagtttccatatactacaaaattagagatagatttcacataattttctcgtagtatacaattttcttgtttgatcagcaaacaaataattttattcaa |
53557263 |
T |
|
| Q |
318 |
acccagatgaaaaaagtacaagaggtactacgaccacaaagagaaaataataattcccttgtgatcaatacatacatatatataatctaagaagtactag |
417 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
53557262 |
actcagatgaaaaaagtacaagaggtactacgaccacaaagagaaaataataattcccttgtgatcaatacataca----tataatctaagaagtactag |
53557167 |
T |
|
| Q |
418 |
taattacaaaaattaagnnnnnnnntatttaccaattttttgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgta |
517 |
Q |
| |
|
|| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53557166 |
ta---acaaaaattaagaaaaaaaatatttaccaattttttgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgta |
53557070 |
T |
|
| Q |
518 |
gcatcttcttcaggagaccaaggtcctttcttcacgttagccttgtcacaacatggagctcta |
580 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
53557069 |
gcatcttcttcaggagaccaaggtcctttcttcacgttagccttgtcacagcatggagctcta |
53557007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 446 - 580
Target Start/End: Complemental strand, 4685489 - 4685355
Alignment:
| Q |
446 |
ttaccaattttttgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctt |
545 |
Q |
| |
|
|||||||||||||| || ||||||||||| || || ||||| |||| | ||| ||||||||||||||| ||| ||||||||| |||||||| || |||| |
|
|
| T |
4685489 |
ttaccaattttttgtgggagagcaatccagttaccaccagtaccatgttgttctatgtaagatttgagtttagaatcttcttctggagaccatggacctt |
4685390 |
T |
|
| Q |
546 |
tcttcacgttagccttgtcacaacatggagctcta |
580 |
Q |
| |
|
|||||||||| || ||||||||||| ||||||||| |
|
|
| T |
4685389 |
tcttcacgtttgctttgtcacaacaaggagctcta |
4685355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 91
Target Start/End: Complemental strand, 4685778 - 4685705
Alignment:
| Q |
18 |
cttccaatgcttatgtaaaggctgcaaatgatgttgtcttcttcttcagtaaatccaccatgtttgatattagg |
91 |
Q |
| |
|
|||||||| || ||||||||||||||||| ||||| ||||||||||| | || ||||||||||||| |||||| |
|
|
| T |
4685778 |
cttccaatactaatgtaaaggctgcaaataatgttatcttcttcttcggagaaaccaccatgtttgagattagg |
4685705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 509 - 579
Target Start/End: Original strand, 4612012 - 4612082
Alignment:
| Q |
509 |
ttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacgttagccttgtcacaacatggagctct |
579 |
Q |
| |
|
|||||||| |||||||| ||||||||||| |||||| |||| || || | ||||||||||| |||||||| |
|
|
| T |
4612012 |
ttgagtgttgcatcttcatcaggagaccatggtcctctcttaactttttctttgtcacaacaaggagctct |
4612082 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 458 - 579
Target Start/End: Complemental strand, 5113295 - 5113174
Alignment:
| Q |
458 |
tgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacgttag |
557 |
Q |
| |
|
||||| ||||||||||||||||| ||||| |||||| ||| |||||||| |||||| |||||||||||||||| ||||| || ||||| || || || | |
|
|
| T |
5113295 |
tgaggtagagcaatccaatttccaccagtaccattttgttctatgtaagacttgagtttagcatcttcttcaggtgaccatggaccttttttgacattgg |
5113196 |
T |
|
| Q |
558 |
ccttgtcacaacatggagctct |
579 |
Q |
| |
|
| |||||||| || |||||||| |
|
|
| T |
5113195 |
ctttgtcacagcaaggagctct |
5113174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 36 - 139
Target Start/End: Complemental strand, 5113599 - 5113496
Alignment:
| Q |
36 |
aggctgcaaatgatgttgtcttcttcttcagtaaatccaccatgtttgatattaggtctcaagtaatttaaccacctaagtctgcaactctttccacatc |
135 |
Q |
| |
|
||||||||||| |||| |||||||||||| | || ||||||||||| ||||| ||||| | ||||||||||| ||||| | || || || ||||||| |
|
|
| T |
5113599 |
aggctgcaaataatgtcgtcttcttcttcggagaaaccaccatgtttaatatttggtctaagataatttaaccatctaagacgacagcttttcccacatc |
5113500 |
T |
|
| Q |
136 |
tctt |
139 |
Q |
| |
|
|||| |
|
|
| T |
5113499 |
tctt |
5113496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 454 - 579
Target Start/End: Original strand, 40820104 - 40820229
Alignment:
| Q |
454 |
tttttgaggaagagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacg |
553 |
Q |
| |
|
|||||||||||||| |||||||||||| |||||||||| |||| || || |||||| | | ||||||||| || ||||| |||||||||||||| |
|
|
| T |
40820104 |
tttttgaggaagagaaatccaatttccaccagttccatgcttttctatatactctttgagctttgtatcttcttctggtgaccatggtcctttcttcaca |
40820203 |
T |
|
| Q |
554 |
ttagccttgtcacaacatggagctct |
579 |
Q |
| |
|
|| || |||||||| || |||||||| |
|
|
| T |
40820204 |
tttgctttgtcacagcaaggagctct |
40820229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 47846787 - 47846845
Alignment:
| Q |
33 |
taaaggctgcaaatgatgttgtcttcttcttcagtaaatccaccatgtttgatattagg |
91 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || || ||||| || ||||| ||||| |
|
|
| T |
47846787 |
taaaggctgcaaatgatgttgtcttcttcttcggtgaaaccaccgtgcttgatgttagg |
47846845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 519 - 567
Target Start/End: Original strand, 47847050 - 47847098
Alignment:
| Q |
519 |
catcttcttcaggagaccaaggtcctttcttcacgttagccttgtcaca |
567 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||| || |||||||| |
|
|
| T |
47847050 |
catcttcttctggtgaccaaggtcctttcttcacgtttgctttgtcaca |
47847098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 464 - 567
Target Start/End: Original strand, 41208793 - 41208896
Alignment:
| Q |
464 |
agagcaatccaatttcctccagttccatttgtttcaatgtaagatttgagtgtagcatcttcttcaggagaccaaggtcctttcttcacgttagccttgt |
563 |
Q |
| |
|
|||| |||||| |||||||||||||||| | | || ||||| || ||| | |||||||||||||||||||| || |||||||| || ||||| |||| |
|
|
| T |
41208793 |
agagtaatccagtttcctccagttccatgtttctctatgtattcctttagttttgcatcttcttcaggagaccatggacctttctttacattagctttgt |
41208892 |
T |
|
| Q |
564 |
caca |
567 |
Q |
| |
|
|||| |
|
|
| T |
41208893 |
caca |
41208896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University