View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15033_high_2 (Length: 533)
Name: NF15033_high_2
Description: NF15033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15033_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 455; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 455; E-Value: 0
Query Start/End: Original strand, 19 - 522
Target Start/End: Complemental strand, 13348875 - 13348372
Alignment:
| Q |
19 |
tctttaccggtttaacatcgagccacatatgatatatcattctgaatgcgtataatgaatatatgccatcattcgacaggttggaccacgtctaaacaaa |
118 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13348875 |
tctttcccggtttaacatcgagccacatatgataaatcattctgaatgcgtataatgaatatatgccatcattcgacaggttggaccacgtctaaacaaa |
13348776 |
T |
|
| Q |
119 |
gacagggaaaggttcccaccaaacaatctccttcttatgttagcaggagcaggactattatggatgggatggacaggattcaatggaggagatccttact |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13348775 |
gacagggaaaggttcccaccaaacaatctccttcttatgttagcaggagcaggactattatggatgggatggacaggattcaatggaggagatccttact |
13348676 |
T |
|
| Q |
219 |
cagttggcttggatgcttcattggctgtcttgaacacacatgcttgcactgctactagcttgcttacttgggtcttccttgatgtcattttcttcagaaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13348675 |
cagttggcttggatgcttcattggctgtcttgaacacacatgcttgcactgctactagcttgcttacttgggtcttccttgatgtcattttcttcagaaa |
13348576 |
T |
|
| Q |
319 |
gccttctgttattggtgctgttcaaggcatgattactggtttggtttgcattacccctgctgcaggtttgtaatatttcattcattcttcaagatannnn |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13348575 |
gccttctgttattggtgctgttcaaggcatgattactggtttggtttgcattacccctgctgcaggtttgtaatatttcattcattcttcaagatatttt |
13348476 |
T |
|
| Q |
419 |
nnncccctttaaatccaatatatacgaggattattttgtacttgttttatattagttgatattttttcacttataactaagagcgcttggatgatatggt |
518 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| | ||||| |
|
|
| T |
13348475 |
tttcccctttaaatccaatatttacgaggattattttgtacttgttttatattagttaatattttgtcacttataactaagagcgcttggataagatggt |
13348376 |
T |
|
| Q |
519 |
tcat |
522 |
Q |
| |
|
|||| |
|
|
| T |
13348375 |
tcat |
13348372 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 296 - 372
Target Start/End: Complemental strand, 39725594 - 39725518
Alignment:
| Q |
296 |
cttgatgtcattttcttcagaaagccttctgttattggtgctgttcaaggcatgattactggtttggtttgcattac |
372 |
Q |
| |
|
||||||||||| ||||||| ||| || || |||||||| |||||||||||||||||||||||| | ||||||||||| |
|
|
| T |
39725594 |
cttgatgtcatattcttcaaaaaaccatcagttattggagctgttcaaggcatgattactggtcttgtttgcattac |
39725518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 119 - 219
Target Start/End: Complemental strand, 39725771 - 39725671
Alignment:
| Q |
119 |
gacagggaaaggttcccaccaaacaatctccttcttatgttagcaggagcaggactattatggatgggatggacaggattcaatggaggagatccttact |
218 |
Q |
| |
|
|||||||| || ||||||||||||||| | | || | ||| ||||| ||||| || |||||||||||||| |||| ||||| || |||||||| |||| |
|
|
| T |
39725771 |
gacagggagagattcccaccaaacaatgtgttactaacgttggcaggggcagggttactatggatgggatgggcaggtttcaacggtggagatccctact |
39725672 |
T |
|
| Q |
219 |
c |
219 |
Q |
| |
|
| |
|
|
| T |
39725671 |
c |
39725671 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 122 - 209
Target Start/End: Complemental strand, 5624660 - 5624573
Alignment:
| Q |
122 |
agggaaaggttcccaccaaacaatctccttcttatgttagcaggagcaggactattatggatgggatggacaggattcaatggaggag |
209 |
Q |
| |
|
||||| || ||||||||||||||| | | |||||| |||||||||||||| | ||||||||||| ||| |||| |||||||| |||| |
|
|
| T |
5624660 |
agggagagattcccaccaaacaatgtattgcttatgctagcaggagcaggattgttatggatgggttggtcagggttcaatggtggag |
5624573 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University