View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15033_low_10 (Length: 261)
Name: NF15033_low_10
Description: NF15033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15033_low_10 |
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Alignment Details
Target: chr5 (Bit Score: 211; Significance: 1e-116; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 21 - 249
Target Start/End: Complemental strand, 38152577 - 38152352
Alignment:
| Q |
21 |
cataagtggaggaggtggctgttggagtggattgaaggttgcaattgatgttaatgaatatgttgcaccagctcctcagcctactccccacaaaggtggc |
120 |
Q |
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| T |
38152577 |
cataagtggaggaggtggctgttggagtggattgaaggttgcaattgatgttaatgaatatgttgcaccagctcctcaacctactccccacaaaggtggc |
38152478 |
T |
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| Q |
121 |
acagatgctttaaacattcaaatctaccactcacttgtggtactcatcttaaccttgatttgcaccattctcttggtataaaaatttcagctcttagaat |
220 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
38152477 |
acagatgctttaaacattcaaatctaccactcacttgtggtactcatcttaaccttgatttgcaccattctcttggtat---aatttcagctcttagaat |
38152381 |
T |
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| Q |
221 |
tggcacactatagtatcagatgatatttt |
249 |
Q |
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| T |
38152380 |
tggcacactatagtatcagatgatatttt |
38152352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 53 - 221
Target Start/End: Complemental strand, 38222214 - 38222049
Alignment:
| Q |
53 |
tgaaggttgcaattgatgttaatgaatatgttgcaccagctcctcagcctactccccacaaaggtggcacagatgctttaaacattcaaatctaccactc |
152 |
Q |
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||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||| || ||| ||| ||||||||||||||||||||| |
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| T |
38222214 |
tgaaggtcgcaatcgatgttaatgaacatgttgcaccagctcctcagcctactccccacaaaagtt---cagcgacttcaaacattcaaatctaccactc |
38222118 |
T |
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| Q |
153 |
acttgtggtactcatcttaaccttgatttgcaccattctcttggtataaaaatttcagctcttagaatt |
221 |
Q |
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| T |
38222117 |
acttgttgtgctcatcttaatcttcatgtgcaccaacttcttggtataataatttcagctattagaatt |
38222049 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 53 - 201
Target Start/End: Complemental strand, 38228579 - 38228434
Alignment:
| Q |
53 |
tgaaggttgcaattgatgttaatgaatatgttgcaccagctcctcagcctactccccacaaaggtggcacagatgctttaaacattcaaatctaccactc |
152 |
Q |
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||||||| ||||| |||||||||||| ||||||||||||||||||||||||||||||||||| || ||| ||| ||||||||||||||||||||| |
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| T |
38228579 |
tgaaggtcgcaatcgatgttaatgaacatgttgcaccagctcctcagcctactccccacaaaagt---tcagcgacttcaaacattcaaatctaccactc |
38228483 |
T |
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| Q |
153 |
acttgtggtactcatcttaaccttgatttgcaccattctcttggtataa |
201 |
Q |
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| T |
38228482 |
acttgctgtgctcatcttaatcttcatgtgcaccaacttcttggtataa |
38228434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 53 - 201
Target Start/End: Complemental strand, 38158873 - 38158731
Alignment:
| Q |
53 |
tgaaggttgcaattgatgttaatgaatatgttgcaccagctcctcagcctactccccacaaaggtggcacagatgctttaaacattcaaatctaccactc |
152 |
Q |
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||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||| || |||||| ||||||| |||| ||||| || |
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| T |
38158873 |
tgaaggtcgcaatcgatgttaatgaacatgttgcaccagctcctcagcctactccccacaaaggt---tcaaatgcttcaaacatttaaatttaccattc |
38158777 |
T |
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| Q |
153 |
acttgtggtactcatcttaaccttgatttgcaccattctcttggtataa |
201 |
Q |
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| |||| |||||||||| |||||| ||||||| |||||||||||| |
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| T |
38158776 |
atctgtg---ctcatcttaatcttgatgtgcaccaacctcttggtataa |
38158731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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