View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15033_low_11 (Length: 231)
Name: NF15033_low_11
Description: NF15033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15033_low_11 |
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| [»] scaffold0769 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 133; Significance: 3e-69; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 215
Target Start/End: Complemental strand, 34641552 - 34641352
Alignment:
| Q |
19 |
aatcattgtcaatcaaaatagcaattgataaacagcttttcttttnnnnnnnnnnnnntttacatcatcacaaggcatgctcataattactgatattaga |
118 |
Q |
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| T |
34641552 |
aatcattgtcaatctaaatagcaattgataaacagcttttcttttaaaaaaataaaaatttacatcatcacaaggcatgctcataattactgatattaga |
34641453 |
T |
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| Q |
119 |
ttgatacttgagagttataactttctcaagtgtctagtatcaat----ttgcatagatggttacaaaatcacttttcaattttaatctgtttcttcatag |
214 |
Q |
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| T |
34641452 |
ttgatacttgagagttataactttctcaagtgtttagtatcaatttaattgcatagatggttacaaaatcacttttcaattttaatttgtttcttcatag |
34641353 |
T |
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| Q |
215 |
t |
215 |
Q |
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| T |
34641352 |
t |
34641352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 78 - 213
Target Start/End: Complemental strand, 34634514 - 34634379
Alignment:
| Q |
78 |
ttacatcatcacaaggcatgctcataattactgatattagattgatacttgagagttataactttctcaagtgtctagtatcaatttgcatagatggtta |
177 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||| |
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| T |
34634514 |
ttacatcatcacaaggcatgctcataattactgatattagattgatacttgagagttataactttcttaagtttttagtatcaatttgcatagatggtta |
34634415 |
T |
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| Q |
178 |
caaaatcacttttcaattttaatctgtttcttcata |
213 |
Q |
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| T |
34634414 |
caaactcacttttcaattttaatctgtttctgcata |
34634379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0769 (Bit Score: 116; Significance: 4e-59; HSPs: 1)
Name: scaffold0769
Description:
Target: scaffold0769; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 78 - 213
Target Start/End: Original strand, 5400 - 5535
Alignment:
| Q |
78 |
ttacatcatcacaaggcatgctcataattactgatattagattgatacttgagagttataactttctcaagtgtctagtatcaatttgcatagatggtta |
177 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||| |
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| T |
5400 |
ttacatcatcacaaggcatgctcataattactgatattagattgatacttgagagttataactttcttaagtttttagtatcaatttgcatagatggtta |
5499 |
T |
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| Q |
178 |
caaaatcacttttcaattttaatctgtttcttcata |
213 |
Q |
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|||| |||||||||||||||||||||||||| |||| |
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| T |
5500 |
caaactcacttttcaattttaatctgtttctgcata |
5535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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