View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15033_low_13 (Length: 201)
Name: NF15033_low_13
Description: NF15033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15033_low_13 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 45269991 - 45270149
Alignment:
| Q |
15 |
aaggtagtgaggaacatgaagatcgtgcaaccattcaactgcagacttgggtgcagtcttcggtccagcatcgagccatatactggcggtgtatttggta |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45269991 |
aaggtagtgaggaacatgaagatcgtgcaaccattcaactgcagacttgggtgcagtcttcggtccagcatcgagccatatactggcggtgtatttggta |
45270090 |
T |
|
| Q |
115 |
gcctcgctcctgctaatgacacccttataacccttccacatgaacctcctcgcatcatt |
173 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||| |
|
|
| T |
45270091 |
gcctcgctcctgctaatgacacccttataacccttccacttgaccctcctcgcaacatt |
45270149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 45273553 - 45273699
Alignment:
| Q |
15 |
aaggtagtgaggaacatgaagatcgtgcaaccattcaactgcagacttgggtgcagtcttcggtccagcatcgagccatatactggcggtgtatttggta |
114 |
Q |
| |
|
|||||||||||||||||||||| | | |||||||||| |||||||||||||| ||||| | ||||||||||| || ||| ||||| || |
|
|
| T |
45273553 |
aaggtagtgaggaacatgaagaccattcaaccattcagctgcagacttgggt------------ccagcttggagccatataccagctgtgaatttgtta |
45273640 |
T |
|
| Q |
115 |
gcctcgctcctgctaatgacacccttataacccttccacatgaacctcctcgcatcatt |
173 |
Q |
| |
|
|||||| ||||||||||||||| | ||||||||||||| ||| |||||||||| |||| |
|
|
| T |
45273641 |
gcctcggccctgctaatgacaccgtgataacccttccacttgaccctcctcgcaacatt |
45273699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 173
Target Start/End: Original strand, 45281797 - 45281943
Alignment:
| Q |
15 |
aaggtagtgaggaacatgaagatcgtgcaaccattcaactgcagacttgggtgcagtcttcggtccagcatcgagccatatactggcggtgtatttggta |
114 |
Q |
| |
|
|||||||||||||||||||||| | | |||||||||| |||||||||||||| ||||| | ||||||||||| || ||| ||||| || |
|
|
| T |
45281797 |
aaggtagtgaggaacatgaagaccattcaaccattcagctgcagacttgggt------------ccagcttggagccatataccagctgtgaatttgtta |
45281884 |
T |
|
| Q |
115 |
gcctcgctcctgctaatgacacccttataacccttccacatgaacctcctcgcatcatt |
173 |
Q |
| |
|
|||||| ||||||||||||||| | ||||||||||||| ||| |||||||||| |||| |
|
|
| T |
45281885 |
gcctcggccctgctaatgacaccgtgataacccttccacttgaccctcctcgcaacatt |
45281943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 164
Target Start/End: Original strand, 45293186 - 45293274
Alignment:
| Q |
76 |
ggtccagcatcgagccatatactggcggtgtatttggtagcctcgctcctgctaatgacacccttataacccttccacatgaacctcct |
164 |
Q |
| |
|
|||||||| | |||||||| || || ||| |||||||||||||| |||||||||| |||| | ||||||||||||| ||| |||||| |
|
|
| T |
45293186 |
ggtccagcttggagccataaaccagcagtgaatttggtagcctcggccctgctaatggcaccgtgataacccttccacttgatcctcct |
45293274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 76 - 164
Target Start/End: Original strand, 45302146 - 45302234
Alignment:
| Q |
76 |
ggtccagcatcgagccatatactggcggtgtatttggtagcctcgctcctgctaatgacacccttataacccttccacatgaacctcct |
164 |
Q |
| |
|
|||||||| | |||||||| || || ||| |||||||||||||| |||||||||| |||| | ||||||||||||| ||| |||||| |
|
|
| T |
45302146 |
ggtccagcttggagccataaaccagcagtgaatttggtagcctcggccctgctaatggcaccgtgataacccttccacttgatcctcct |
45302234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University