View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15033_low_5 (Length: 407)
Name: NF15033_low_5
Description: NF15033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15033_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 363; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 13 - 391
Target Start/End: Complemental strand, 28851412 - 28851034
Alignment:
| Q |
13 |
aaattgccaaaatctccgaagcatactgtttattactatcaaattccctaaccttaatcttccccaacaaccacttcaacagctttgtcttctcacaaac |
112 |
Q |
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| T |
28851412 |
aaattgccaaaatctccgacgcatactgtttattactatcaaattccctaaccttaatcttccccaacaaccacttcaacagctttgtcttctcacaaac |
28851313 |
T |
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| Q |
113 |
catctccgccaccgccggtttcacctcaatcaaattctcaatcgtcgccagcgtattataaaccgcggcattctcatcggcatccttctccgacaaccga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
28851312 |
catctccgccaccgccggtttcacctcaatcaaattctcaatcgtcgccagcgtattataaaccgcagcattctcatccgcatccttctccgacaaccga |
28851213 |
T |
|
| Q |
213 |
tgcaaattctgcacaagcagctccaacgcactattatccaccaaagcatcaacaagaaccttagcaggttcatcattctcatcaagcacatcttcatcag |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28851212 |
tgcaaattctgcacaagcagctccaacgcactattatccaccaacgcatcaacaagaaccttagcaggttcatcattctcatcaagcacatcttcatcag |
28851113 |
T |
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| Q |
313 |
tcaaatcctgaatcaacgtaaccacatcaatagcaatatcagtattatcatgattcaacaaatcaacaatcgacggaac |
391 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28851112 |
tcaaatcctgaatcaacgtaaccacatcaatagcaatatcagtattatcatgattcaacaaatcaacaatcgacggaac |
28851034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 99 - 391
Target Start/End: Complemental strand, 8389389 - 8389098
Alignment:
| Q |
99 |
gtcttctcacaaaccatctccgccaccgccggtttcacctcaatcaaattctcaatcgtcgccagcgtattataaaccgcggcattctcatcggcatcct |
198 |
Q |
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| T |
8389389 |
gtcttctcacaaaccatctccgccacctc-ggtttcacctcaatcaaattctcaatcttcgccagcgtattataaacagcagcattctcatcggcatcct |
8389291 |
T |
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| Q |
199 |
tctccgacaaccgatgcaaattctgcacaagcagctccaacgcactattatccaccaaagcatcaacaagaaccttagcaggttcatcattctcatcaag |
298 |
Q |
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|||||||||| ||||| | ||||||||| | | |||||||||||| |||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
8389290 |
tctccgacaagcgatgaagattctgcactaaaggttccaacgcactactatctaccaacgcatcaacaagaaccttagcaggttcatcattctcatcaag |
8389191 |
T |
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| Q |
299 |
cacatcttcatcagtcaaatcctgaatcaacgtaaccacatcaatagcaatatcagtattatcatgattcaacaaatcaacaatcgacggaac |
391 |
Q |
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||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8389190 |
cacattttcatcagtcaaatcctgaatcaacgtaacaacatcaatagcaatatcagtattatcatgattcaacaaatcaacaatcgacggaac |
8389098 |
T |
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