View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15033_low_6 (Length: 337)
Name: NF15033_low_6
Description: NF15033
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15033_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 284; Significance: 1e-159; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 20 - 323
Target Start/End: Complemental strand, 37959135 - 37958832
Alignment:
| Q |
20 |
acctcaagtccaccttctctatcttcactttcagcaatagacatacacgtaaatgggtgcaccatttcaactttaacaggttttccaaatccaaaatcag |
119 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
37959135 |
acctcaagtccaccttctctattttcactttcagcaatagacatacacgtaaatgggtgcaccatttcaactttagcaggttttccaaatccaaaatcag |
37959036 |
T |
|
| Q |
120 |
tctcataaacattaaacttaggtgaacctgttaccaacaacacacttcccaactcatacatctttttaaatctatccctccattctcccatatctttaag |
219 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37959035 |
tctcataaacattaaacttaggcgaacctgttaccaacaacacacttcccaactcatacatctttttaaatctatccctccattctcccatatctttaaa |
37958936 |
T |
|
| Q |
220 |
aggttcatttttcatttcacttattaccttttcaattaccttaacagcattcacataaccatcttcccccttcatatcctttctcttcatagttgcatga |
319 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37958935 |
aggttcatttttcatttcacttattaccctttcaattaccttaacagcattcacataaccatcttcccccttcatatcctttctcttcatagttgcatga |
37958836 |
T |
|
| Q |
320 |
cata |
323 |
Q |
| |
|
|||| |
|
|
| T |
37958835 |
cata |
37958832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 20 - 323
Target Start/End: Original strand, 37896067 - 37896370
Alignment:
| Q |
20 |
acctcaagtccaccttctctatcttcactttcagcaatagacatacacgtaaatgggtgcaccatttcaactttaacaggttttccaaatccaaaatcag |
119 |
Q |
| |
|
|||||||| ||||||||||||||| ||||||||||||||||||||||| |||| | |||||||||||||||||||||||| | |||||||||||||||| |
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|
| T |
37896067 |
acctcaagaccaccttctctatctccactttcagcaatagacatacacttaaacgaatgcaccatttcaactttaacaggtctaccaaatccaaaatcag |
37896166 |
T |
|
| Q |
120 |
tctcataaacattaaacttaggtgaacctgttaccaacaacacacttcccaactcatacatctttttaaatctatccctccattctcccatatctttaag |
219 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||||||| |||||| |||||||||||||||| | |||||||| |
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|
| T |
37896167 |
tctcataaacattaaacttaggtgatcctgttaccaacaatacacttcccacctcatacatcttcttaaatgtatccctccattctcctacatctttaaa |
37896266 |
T |
|
| Q |
220 |
aggttcatttttcatttcacttattaccttttcaattaccttaacagcattcacataaccatcttcccccttcatatcctttctcttcatagttgcatga |
319 |
Q |
| |
|
||||||||||||||||||||||||| || |||||||| | |||||| |||||||| |||||||||||||||||||| |||||||||||| |||||||||| |
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|
| T |
37896267 |
aggttcatttttcatttcacttattgccctttcaatttctttaacaccattcacaaaaccatcttcccccttcataacctttctcttcacagttgcatga |
37896366 |
T |
|
| Q |
320 |
cata |
323 |
Q |
| |
|
|||| |
|
|
| T |
37896367 |
cata |
37896370 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 20 - 319
Target Start/End: Complemental strand, 37953391 - 37953092
Alignment:
| Q |
20 |
acctcaagtccaccttctctatcttcactttcagcaatagacatacacgtaaatgggtgcaccatttcaactttaacaggttttccaaatccaaaatcag |
119 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| | |||| |||| ||||||||||||||| |||||||||||||||||||||| |
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|
| T |
37953391 |
acctcaagtccaccttctctatctccactttcagcaatagacatacactttaatgaatgcatcatttcaactttaactggttttccaaatccaaaatcag |
37953292 |
T |
|
| Q |
120 |
tctcataaacattaaacttaggtgaacctgttaccaacaacacacttcccaactcatacatctttttaaatctatccctccattctcccatatctttaag |
219 |
Q |
| |
|
||||||||||||||||||||||||| || |||| || |||| | |||| |||||| ||||||||| | | | ||||| | ||||||||| |
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|
| T |
37953291 |
tctcataaacattaaacttaggtgacccccttacaaataacaaatttccaaactcacctatctttttagctgaaccttcccattttgttgcatctttaag |
37953192 |
T |
|
| Q |
220 |
aggttcatttttcatttcacttattaccttttcaattaccttaacagcattcacataaccatcttcccccttcatatcctttctcttcatagttgcatga |
319 |
Q |
| |
|
||||||||||||||| ||| ||||| |||| |||||||||||||||||||||||| |||||||||| || |||| ||| |||||||||| ||||||||| |
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|
| T |
37953191 |
aggttcatttttcatctcagttattgccttctcaattaccttaacagcattcacaaaaccatcttctcctttcacatctcttctcttcatcgttgcatga |
37953092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 7e-37; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 22 - 144
Target Start/End: Original strand, 39711855 - 39711977
Alignment:
| Q |
22 |
ctcaagtccaccttctctatcttcactttcagcaatagacatacacgtaaatgggtgcaccatttcaactttaacaggttttccaaatccaaaatcagtc |
121 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||| ||||| || | |||||| |||||||| ||||||||||||||||||||||||||||||| ||| |
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|
| T |
39711855 |
ctcaagtccaccttctccatctccactttcagcaagagacacacccttaaatgcatgcaccatctcaactttaacaggttttccaaatccaaaattggtc |
39711954 |
T |
|
| Q |
122 |
tcataaacattaaacttaggtga |
144 |
Q |
| |
|
||||||||||||||||||||||| |
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|
| T |
39711955 |
tcataaacattaaacttaggtga |
39711977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 22 - 141
Target Start/End: Original strand, 11527477 - 11527596
Alignment:
| Q |
22 |
ctcaagtccaccttctctatcttcactttcagcaatagacatacacgtaaatgggtgcaccatttcaactttaacaggttttccaaatccaaaatcagtc |
121 |
Q |
| |
|
||||||||||||||||| |||| |||||||||||| ||||| | | || |||| |||||||| ||||||||||||||| ||||||||||||| || ||| |
|
|
| T |
11527477 |
ctcaagtccaccttctccatctccactttcagcaagagacacagccatagatggatgcaccatctcaactttaacaggtcttccaaatccaaattcggtc |
11527576 |
T |
|
| Q |
122 |
tcataaacattaaacttagg |
141 |
Q |
| |
|
|||||||||||||| ||||| |
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|
| T |
11527577 |
tcataaacattaaatttagg |
11527596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 214 - 316
Target Start/End: Original strand, 39712047 - 39712149
Alignment:
| Q |
214 |
tttaagaggttcatttttcatttcacttattaccttttcaattaccttaacagcattcacataaccatcttcccccttcatatcctttctcttcatagtt |
313 |
Q |
| |
|
|||||||||||||||||| || ||| | | |||||||||||||||||||| ||| ||| ||| |||| ||||||||||||||||||||||| ||| |
|
|
| T |
39712047 |
tttaagaggttcattttttatctcattaacagccttttcaattaccttaacaacatcaacaaaactatctattcccttcatatcctttctcttcatggtt |
39712146 |
T |
|
| Q |
314 |
gca |
316 |
Q |
| |
|
||| |
|
|
| T |
39712147 |
gca |
39712149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 199 - 316
Target Start/End: Original strand, 11527654 - 11527771
Alignment:
| Q |
199 |
ccattctcccatatctttaagaggttcatttttcatttcacttattaccttttcaattaccttaacagcattcacataaccatcttcccccttcatatcc |
298 |
Q |
| |
|
||||||| ||| ||||||||||||||||||||| | ||| | |||||||||||||||||||| ||| ||| ||| || ||| || ||||||||| |
|
|
| T |
11527654 |
ccattcttccacatctttaagaggttcattttttacctcagcaacaaccttttcaattaccttaacgacatcaacaaaactattttctcctttcatatcc |
11527753 |
T |
|
| Q |
299 |
tttctcttcatagttgca |
316 |
Q |
| |
|
||||||||||| |||||| |
|
|
| T |
11527754 |
tttctcttcattgttgca |
11527771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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