View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15034_high_13 (Length: 215)

Name: NF15034_high_13
Description: NF15034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15034_high_13
NF15034_high_13
[»] chr2 (1 HSPs)
chr2 (24-166)||(37981883-37982025)
[»] chr4 (2 HSPs)
chr4 (24-166)||(53594349-53594489)
chr4 (80-165)||(37370620-37370707)
[»] chr5 (3 HSPs)
chr5 (72-166)||(26795238-26795334)
chr5 (112-165)||(27786467-27786520)
chr5 (112-165)||(28594208-28594261)
[»] chr3 (4 HSPs)
chr3 (72-166)||(10225396-10225492)
chr3 (72-166)||(10104619-10104715)
chr3 (72-166)||(10215767-10215863)
chr3 (112-166)||(45926712-45926766)
[»] chr8 (1 HSPs)
chr8 (112-165)||(24318180-24318233)
[»] chr1 (1 HSPs)
chr1 (112-165)||(42657978-42658031)


Alignment Details
Target: chr2 (Bit Score: 127; Significance: 9e-66; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 24 - 166
Target Start/End: Complemental strand, 37982025 - 37981883
Alignment:
Q  24 gcaagacatgtaaggtcaatgaattcacaatatctggaactagttggaaaaatgaatctcgttggacaacaaggaaaagaaaattgtgagtctcacaaat 123  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  37982025 gcaagacatgtaaggtaaatgaattcacaatatctggaactagttggaaaaatgaatctcgttggacagcaaggaaaagaaaattgtgagtctcacaaat 37981926  T
Q  124 ttgtgtgagattgttgaacgagcgttttgttcacatttttaat 166  Q
    |||||||||||||||||| |||| |||||||||||||||||||    
T  37981925 ttgtgtgagattgttgaatgagcattttgttcacatttttaat 37981883  T

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Target: chr4 (Bit Score: 112; Significance: 8e-57; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 24 - 166
Target Start/End: Complemental strand, 53594489 - 53594349
Alignment:
Q  24 gcaagacatgtaaggtcaatgaattcacaatatctggaactagttggaaaaatgaatctcgttggacaacaaggaaaagaaaattgtgagtctcacaaat 123  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  53594489 gcaagacatgtaaggtaaatgaattcacaatatctggaactagttggaaaaatgaatctcgttggacagcaaggaaaagaaaattgtgagtctcacaaat 53594390  T
Q  124 ttgtgtgagattgttgaacgagcgttttgttcacatttttaat 166  Q
    |||| ||||||  ||||| |||| |||||||||||||||||||    
T  53594389 ttgtctgagat--ttgaatgagcattttgttcacatttttaat 53594349  T

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Target: chr4; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 80 - 165
Target Start/End: Original strand, 37370620 - 37370707
Alignment:
Q  80 tctcgttggacaacaaggaaaagaaaattgtg--agtctcacaaatttgtgtgagattgttgaacgagcgttttgttcacatttttaa 165  Q
    |||||||||||| || ||||||||||||||||  ||||| |||||||| ||||| ||||||||| |||  ||||||||||||||||||    
T  37370620 tctcgttggacatcacggaaaagaaaattgtgggagtcttacaaatttttgtgaaattgttgaatgagtattttgttcacatttttaa 37370707  T

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Target: chr5 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 26795238 - 26795334
Alignment:
Q  72 aaaatgaatctcgttggacaacaaggaaaagaaaattgtgagtctcacaaatttgtgtga--gattgttgaacgagcgttttgttcacatttttaat 166  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||  | |||||||| |||| |||||||||||||||||||    
T  26795238 aaaatgaatctcgttggacagcaaggataagaaaattgtgagtctcacaaatttgtgagattgtttgttgaatgagcattttgttcacatttttaat 26795334  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 27786520 - 27786467
Alignment:
Q  112 agtctcacaaatttgtgtgagattgttgaacgagcgttttgttcacatttttaa 165  Q
    ||||||| |||||| ||||||||||||||| |||| ||||||||||||||||||    
T  27786520 agtctcataaatttttgtgagattgttgaatgagcattttgttcacatttttaa 27786467  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 28594208 - 28594261
Alignment:
Q  112 agtctcacaaatttgtgtgagattgttgaacgagcgttttgttcacatttttaa 165  Q
    |||||||||||||| ||||||||||||||| |||| |||| |||||||||||||    
T  28594208 agtctcacaaatttttgtgagattgttgaatgagcattttattcacatttttaa 28594261  T

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Target: chr3 (Bit Score: 62; Significance: 6e-27; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 10225396 - 10225492
Alignment:
Q  72 aaaatgaatctcgttggacaacaaggaaaagaaaattgtgagtctcacaaatttgtgtga--gattgttgaacgagcgttttgttcacatttttaat 166  Q
    |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| ||  | |||||||| |||| |||||||||||||||||||    
T  10225396 aaaatgaatctcgttggacagcaaggataagaaaattgtgagtctcacaaatttgtgagattgtttgttgaatgagcattttgttcacatttttaat 10225492  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 10104619 - 10104715
Alignment:
Q  72 aaaatgaatctcgttggacaacaaggaaaagaaaattgtgagtctcacaaatttgtgtga--gattgttgaacgagcgttttgttcacatttttaat 166  Q
    ||||||||||||| |||||| |||||| |||||||||||||||||||||||||||||  |  | |||||||| |||| |||||||||||||||||||    
T  10104619 aaaatgaatctcggtggacagcaaggataagaaaattgtgagtctcacaaatttgtgacattgtttgttgaatgagcattttgttcacatttttaat 10104715  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 72 - 166
Target Start/End: Original strand, 10215767 - 10215863
Alignment:
Q  72 aaaatgaatctcgttggacaacaaggaaaagaaaattgtgagtctcacaaatttgtgtga--gattgttgaacgagcgttttgttcacatttttaat 166  Q
    ||||||||||||| |||||| |||||| ||||||||||||||||||||||||||||| ||  | ||||| || |||| |||||||||||||||||||    
T  10215767 aaaatgaatctcggtggacagcaaggataagaaaattgtgagtctcacaaatttgtgagattgtttgttaaatgagcattttgttcacatttttaat 10215863  T

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Target: chr3; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 45926712 - 45926766
Alignment:
Q  112 agtctcacaaatttgtgtgagattgttgaacgagcgttttgttcacatttttaat 166  Q
    ||||||| |||||| ||||||||||||||| |||| |||||||||||||||||||    
T  45926712 agtctcataaatttttgtgagattgttgaatgagcattttgttcacatttttaat 45926766  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 24318233 - 24318180
Alignment:
Q  112 agtctcacaaatttgtgtgagattgttgaacgagcgttttgttcacatttttaa 165  Q
    |||||||||||||| ||| ||||||||||| |||| ||||||||||||||||||    
T  24318233 agtctcacaaatttttgtaagattgttgaatgagcattttgttcacatttttaa 24318180  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 42658031 - 42657978
Alignment:
Q  112 agtctcacaaatttgtgtgagattgttgaacgagcgttttgttcacatttttaa 165  Q
    |||||||||||||| ||||||||||||||| |||  || |||||||||||||||    
T  42658031 agtctcacaaatttttgtgagattgttgaatgagtattgtgttcacatttttaa 42657978  T

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