View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15034_low_11 (Length: 275)
Name: NF15034_low_11
Description: NF15034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15034_low_11 |
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| [»] scaffold0154 (2 HSPs) |
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| [»] scaffold0189 (1 HSPs) |
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Alignment Details
Target: scaffold0154 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: scaffold0154
Description:
Target: scaffold0154; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 275
Target Start/End: Complemental strand, 14610 - 14336
Alignment:
| Q |
1 |
gccgttgatacccgaagaattatcgaaagaaggaaaagattttgttgagaagtgttttgttaaagatccaagaaaaagatggacggctgagatgcttttg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
14610 |
gccgttgatacccgaagaattatcgaaagaaggaaaagattttgttgagaagtgttttgtgaaagatccaagaaaaagatggacggctgagatgcttttg |
14511 |
T |
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| Q |
101 |
aatcatccttttgttgaagaagtgaagaatgttaatgaatcgtcgccaagaaatcactttgatttcaatgattgggtttccgatgctagtgattcagttc |
200 |
Q |
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| T |
14510 |
aatcatccttttgttgaagaagtgattaatgttaatgaatcgtcgccaagaaatcactttgatttcaatgattgggtttccgatgctagtgattcagttc |
14411 |
T |
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| Q |
201 |
caagttcaccagaatcggaagactcaaatcaatgggattttgattataaattttgttccgcggtggatcggctcc |
275 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
14410 |
caagttcaccggaatcggaagactcaaatcaatgggattttgattctaaattttgttccgcggtggatcggctcc |
14336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0154; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 24030 - 23851
Alignment:
| Q |
1 |
gccgttgatacccgaagaattatcgaaagaaggaaaagattttgttgagaagtgttttgttaaagatccaagaaaaagatggacggctgagatgcttttg |
100 |
Q |
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| T |
24030 |
gccgttgatacccgaagaattatcgaaagaaggaaaagattttgttgagaagtgttttgttaaagatcgaagaaagagatggacggctgagatgcttttg |
23931 |
T |
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| Q |
101 |
aatcatccttttgttgaagaagtgaagaatgttaatgaatcgtcgccaagaaatcactttgatttcaatgattgggtttc |
180 |
Q |
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| T |
23930 |
aatcatccttttgttgaagaagtgaagaatgttgatgagtcgtcaccaagaaatcactttgatttcaatgattgggtttc |
23851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0189 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: scaffold0189
Description:
Target: scaffold0189; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 1 - 274
Target Start/End: Original strand, 726 - 999
Alignment:
| Q |
1 |
gccgttgatacccgaagaattatcgaaagaaggaaaagattttgttgagaagtgttttgttaaagatccaagaaaaagatggacggctgagatgcttttg |
100 |
Q |
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|||| |||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
726 |
gccggtgatacccgaagaattgtcaaaagaaggaaaagattttgttgagaagtgttttgtgaaagatccaagaaaaagatggacggctgagatgcttttg |
825 |
T |
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| Q |
101 |
aatcatccttttgttgaagaagtgaagaatgttaatgaatcgtcgccaagaaatcactttgatttcaatgattgggtttccgatgctagtgattcagttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||| | |||||| |||| |
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| T |
826 |
aatcatccttttgttgaagaagtgaagaatgttaatgaatcatcaccaagaaatcactttgatttcaatgattgggtttctagtgcgactgattcggttc |
925 |
T |
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| Q |
201 |
caagttcaccagaatcggaagactcaaatcaatgggattttgattataaattttgttccgcggtggatcggctc |
274 |
Q |
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| | |||||| ||||||||||| |||| || |||||||||||||| |||||||| ||||||| ||| |||||| |
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| T |
926 |
cgaattcaccggaatcggaagaatcaagtccatgggattttgattccaaattttgctccgcggcggaccggctc |
999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 102
Target Start/End: Complemental strand, 6221868 - 6221768
Alignment:
| Q |
2 |
ccgttgatacccgaagaattatcgaaagaaggaaaagattttgttgagaagtgttttgttaaagatccaagaaaaagatggacggctgagatgcttttga |
101 |
Q |
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|||||||| || || |||||||| ||| |||||||||||| | || |||||||| | || ||||| ||||||||||||||| ||||||||||||| |
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| T |
6221868 |
ccgttgattccagatgaattatcacaagtcggaaaagattttctcgaaaagtgtttcatcaaggatccttcaaaaagatggacggcagagatgcttttga |
6221769 |
T |
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| Q |
102 |
a |
102 |
Q |
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| T |
6221768 |
a |
6221768 |
T |
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