View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15034_low_13 (Length: 252)
Name: NF15034_low_13
Description: NF15034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15034_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 7 - 238
Target Start/End: Original strand, 20507110 - 20507341
Alignment:
| Q |
7 |
aatatacacaattgattcctcaaagatcacttgaattatacttaactctacacttttttatttcttttgtgacgttcattttggtcattgtatgcatgat |
106 |
Q |
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| T |
20507110 |
aatatacacaattgatttctcaaagatcaattaaattatatttaactctaaactttattatttcttttgtgacgttcattttagtcattgtatgcatgat |
20507209 |
T |
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| Q |
107 |
gtagtcatgtagctgaaaggtagttgtctatatataaaattgttgtgaaaaacaacatctttttagttctaaatggaagattttgtttctttactcagca |
206 |
Q |
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| T |
20507210 |
gtagtcatgtagctgaaaggtagttgtcaatatataaaattgttgtgaaaaacaacatctttttagttctgaatggaagatgttgtttctttactcagca |
20507309 |
T |
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| Q |
207 |
ataaacataaggtttggataactccacctgtt |
238 |
Q |
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| T |
20507310 |
ataaacataaggtttggataactccacctgtt |
20507341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 180 - 238
Target Start/End: Complemental strand, 20514558 - 20514499
Alignment:
| Q |
180 |
tggaagattttgtttctttactcagcaataaacataagg-tttggataactccacctgtt |
238 |
Q |
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||||| ||||||||| ||| ||||||||||||||||||| ||| ||||||||||||||| |
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| T |
20514558 |
tggaacattttgtttttttgctcagcaataaacataaggtttttaataactccacctgtt |
20514499 |
T |
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