View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15034_low_3 (Length: 663)
Name: NF15034_low_3
Description: NF15034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15034_low_3 |
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| [»] scaffold0136 (1 HSPs) |
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Alignment Details
Target: scaffold0136 (Bit Score: 527; Significance: 0; HSPs: 1)
Name: scaffold0136
Description:
Target: scaffold0136; HSP #1
Raw Score: 527; E-Value: 0
Query Start/End: Original strand, 11 - 644
Target Start/End: Complemental strand, 27093 - 26448
Alignment:
| Q |
11 |
cacagacaacatcaacaacatgcttaccttaatcctttcaaaagaggagattagaaatgcagtgttctctctaaacaaggatgggtcccctggacctgat |
110 |
Q |
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| T |
27093 |
cacagacaacatcaacaacatgcttaccttaatcccttcaaaagaggagattagaaatgcagttttctctctaaacaaggatggggcccctggacctgat |
26994 |
T |
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| Q |
111 |
gggtttggtgcagnnnnnnnc-aaacttactagcatgtaatcaatagagatgtggagaatgctgtcttggattttttcattaatagttggatgatgccaa |
209 |
Q |
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| T |
26993 |
gggtttggtgcagtctttttctaaacttactggaatgtaatcaatagagatgtggagaatgctgtcctagattttttcattaatagctggatgatgccaa |
26894 |
T |
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| Q |
210 |
acttcaatgccaacactcttattttaatccctaaaattccaaatgcggatgaagtcacacactatagaccaattgctttagccaacttcaagtacaaaat |
309 |
Q |
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| T |
26893 |
acttcaatgccaacactcttattttaatccctaaaattccaaatgctgatgaagacacacactatagaccaattgctttagccaacttcaagtacaaaat |
26794 |
T |
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| Q |
310 |
aatttcaaagattttagctgatagggttgctgccataatgcccacaatcatttctcctgagcaaaaaggatttatacaaggaagacaaatgagagattgt |
409 |
Q |
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| T |
26793 |
aatttcaaaaattttagctgatagggttgctgccataatgccaacaatcatttctcctgagcaaaaaggatttatacaaggaagacaaatgagagattgt |
26694 |
T |
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| Q |
410 |
atatgcctgacatctgaagcaataaatcaacttgataaaagaactt-----------ttggctttcaaggttgatatagcaaaggcttttgacactattg |
498 |
Q |
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| T |
26693 |
atatgcctggcatctgaagcaataaatcaacttgataaaagaacttttggaggtaatttggctttcaaggttgatatagcaaaggcttttgacactattg |
26594 |
T |
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| Q |
499 |
agtggtcttttttgcttaaagtcttatcaaattttggcttcaatgaaaaattctgcaactggatcaaggtaatcttagaatctgctactctttcaatttc |
598 |
Q |
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| T |
26593 |
agtggtcttttttgcttaaagtcttatcaaattttggcttcaatgaaaaattctgcaactggatcaaggtaatcttagaatctgctactctttcaatttc |
26494 |
T |
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| Q |
599 |
catcaatggttcccagcatggatattttcactgcagtagaggggtt |
644 |
Q |
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| T |
26493 |
catcaatggttcccagcatggatattttcactgcagtagaggggtt |
26448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 275 - 319
Target Start/End: Original strand, 23111556 - 23111600
Alignment:
| Q |
275 |
agaccaattgctttagccaacttcaagtacaaaataatttcaaag |
319 |
Q |
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| T |
23111556 |
agaccaattgccttagccaacttcaagttcaagattatttcaaag |
23111600 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 197 - 225
Target Start/End: Original strand, 13503630 - 13503658
Alignment:
| Q |
197 |
tggatgatgccaaacttcaatgccaacac |
225 |
Q |
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| T |
13503630 |
tggatgatgccaaacttcaatgccaacac |
13503658 |
T |
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