View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15034_low_4 (Length: 583)
Name: NF15034_low_4
Description: NF15034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15034_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 415; Significance: 0; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 1 - 561
Target Start/End: Complemental strand, 21546333 - 21545774
Alignment:
| Q |
1 |
attattgagtgaatgtagaaggccattattgta--acctttg-tcttacaatcgatttcctataattgnnnnnnnnnnnnnnncaaatggcatgtctcat |
97 |
Q |
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|||||||||||||||| |||||||||||||||| ||||||| |||| |||||||||| ||||||||| |||||||||||| |||| |
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| T |
21546333 |
attattgagtgaatgtggaaggccattattgtataacctttgatcttgcaatcgattttctataattgttttttttttttt--caaatggcatgtgtcat |
21546236 |
T |
|
| Q |
98 |
gctgttttggtgtcacaattgataagagaaattgttccttcactattgattttcactaggttgatgaaagttacatgaactctaaactcatgattgtcgg |
197 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21546235 |
gctgttttggtgtctcaattgataagagaaattgttccttcactattgattttcactaggttgatgaaagttacatgaactctaaactcatgattgtcgg |
21546136 |
T |
|
| Q |
198 |
aggatgatgagtagctctgcaattgtttacctatttgatgcatacatggagaaatagccacaaataagtatgagtactattttttggttgattataacat |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
21546135 |
aggatgatgagtagctctgcaattgtttacctatttgatgcatacatggagaagtagccacaaatatgtatgagtactattttttggttgattataacat |
21546036 |
T |
|
| Q |
298 |
gattaaatgaatattatagactcttatgttatcatgttatactaatgnnnnnnnnnnnncgaaagatgttatactcatgtttgaatattctatattaagg |
397 |
Q |
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| T |
21546035 |
gattaaatgaatattatagactcttatgttatcatgttatactcatgttttttttttt--gaaagatgttatactcatgtttgaatattctatattaagg |
21545938 |
T |
|
| Q |
398 |
cttatttagattttgccatgtgtgtaggatgttttataaagccaacaaaccttatgcattttggccggtgtaaaaggaggaatcaccaacgatgtaatgt |
497 |
Q |
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| T |
21545937 |
cttatttagattttgccatgtgtgtaggatgttttataaagccaacaaaccttatgcattttggccggtgtaaaaggaggaattaccaacgatgtaatgt |
21545838 |
T |
|
| Q |
498 |
ggcactaactgtgaggcaaacaatgggatcttaatagtagcttaatgaaagggaatataagtac |
561 |
Q |
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| T |
21545837 |
ggcactaactgtgaggcaaacaatgggatcttaatagtagcttaatgaaagggaatataagtac |
21545774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 363 - 454
Target Start/End: Original strand, 7498660 - 7498751
Alignment:
| Q |
363 |
atgttatactcatgtttgaatattctatattaaggcttatttagattttgccatgtgtgtaggatgttttataaagccaacaaaccttatgc |
454 |
Q |
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| T |
7498660 |
atgttgtacttatgtttgaatattctatattgaggcttatttagattttactatgtgtgtaggatgttttataaagccaatagaccttatgc |
7498751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 81 - 155
Target Start/End: Original strand, 7498563 - 7498637
Alignment:
| Q |
81 |
caaatggcatgtctcatgctgttttggtgtcacaattgataagagaaattgttccttcactattgattttcacta |
155 |
Q |
| |
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| T |
7498563 |
caaatggcatgtgtcatgctgttttggtgtcacaattgataagagaaattgtttctttgctattcattttcacta |
7498637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 466 - 553
Target Start/End: Original strand, 7498814 - 7498901
Alignment:
| Q |
466 |
tgtaaaaggaggaatcaccaacgatgtaatgtggcactaactgtgaggcaaacaatgggatcttaatagtagcttaatgaaagggaat |
553 |
Q |
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|||| ||||||||||||||||||||||| |||| |||||| ||||||| || || |||||||||||||||||||||||| ||||| |
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| T |
7498814 |
tgtagaaggaggaatcaccaacgatgtattgtgatgctaactatgaggcatacgataagatcttaatagtagcttaatgaaaaggaat |
7498901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 73; Significance: 5e-33; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 81 - 324
Target Start/End: Original strand, 46885136 - 46885351
Alignment:
| Q |
81 |
caaatggcatgtctcatgctgttttggtgtcacaattgataagagaaattgttccttcactattgattttcactaggttgatgaaagttacatgaactct |
180 |
Q |
| |
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|||||||||||| ||||| ||||||||||||||||||||||||||||||| | ||||||||| ||||||||||||| |||||||||| |
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| T |
46885136 |
caaatggcatgtgtcatgtagttttggtgtcacaattgataagagaaattg-------------gcttttcactatgttgatgaaagttgcatgaactct |
46885222 |
T |
|
| Q |
181 |
aaactcatgattgtcggaggatgatgagtagctctgcaattgtttacctatttgatgcatacatggagaaatagccacaaataagtatgagtactatttt |
280 |
Q |
| |
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||| ||||||||| |||||||||||||| |||||||||||||||||| |||||| | ||| | |||||||||||| ||| |||||| |
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| T |
46885223 |
aaagtcatgattgccggaggatgatgagcagctctgcaattgtttac----ttgatgttt-----------tagactcaaataagtatgggtattatttt |
46885307 |
T |
|
| Q |
281 |
ttggttgattataacatgattaaatgaatattatagactcttat |
324 |
Q |
| |
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||||||||||||||||||||||||||||| || |||||||||| |
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| T |
46885308 |
ttggttgattataacatgattaaatgaatgtttaagactcttat |
46885351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 363 - 454
Target Start/End: Complemental strand, 37685101 - 37685010
Alignment:
| Q |
363 |
atgttatactcatgtttgaatattctatattaaggcttatttagattttgccatgtgtgtaggatgttttataaagccaacaaaccttatgc |
454 |
Q |
| |
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||||| |||| |||||||||||||||||||| ||||||||||||||||| | |||||||| |||||||||||||||||| | ||||||||| |
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| T |
37685101 |
atgttgtacttatgtttgaatattctatattgaggcttatttagattttactatgtgtgttagatgttttataaagccaatagaccttatgc |
37685010 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 81 - 155
Target Start/End: Complemental strand, 37685198 - 37685124
Alignment:
| Q |
81 |
caaatggcatgtctcatgctgttttggtgtcacaattgataagagaaattgttccttcactattgattttcacta |
155 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||| |||||||||| ||| ||||| |||||||||| |
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| T |
37685198 |
caaatggcatgtgtcatgctgttttggtgtcacaattgataaaagaaattgtttctttgctattcattttcacta |
37685124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 367 - 452
Target Start/End: Original strand, 46885366 - 46885451
Alignment:
| Q |
367 |
tatactcatgtttgaatattctatattaaggcttatttagattttgccatgtgtgtaggatgttttataaagccaacaaaccttat |
452 |
Q |
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| T |
46885366 |
tatactcatgagtgaatattctatacttaaacttatttagattttgttatgtgtgtaggatgctttataaacccaacataccttat |
46885451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 471 - 553
Target Start/End: Complemental strand, 37684942 - 37684860
Alignment:
| Q |
471 |
aaggaggaatcaccaacgatgtaatgtggcactaactgtgaggcaaacaatgggatcttaatagtagcttaatgaaagggaat |
553 |
Q |
| |
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|||||||||||||||| |||||| |||| |||||||||||||| || || ||||||||||||||||||||| || ||||| |
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| T |
37684942 |
aaggaggaatcaccaatgatgtattgtgatgctaactgtgaggcatacgatatgatcttaatagtagcttaatgtaaaggaat |
37684860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 503 - 553
Target Start/End: Original strand, 9453035 - 9453085
Alignment:
| Q |
503 |
taactgtgaggcaaacaatgggatcttaatagtagcttaatgaaagggaat |
553 |
Q |
| |
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|||||| ||||||||| || ||||||||||||||||||||||||| ||||| |
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| T |
9453035 |
taactgggaggcaaacgataggatcttaatagtagcttaatgaaaaggaat |
9453085 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 9e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 479 - 547
Target Start/End: Complemental strand, 38944793 - 38944725
Alignment:
| Q |
479 |
atcaccaacgatgtaatgtggcactaactgtgaggcaaacaatgggatcttaatagtagcttaatgaaa |
547 |
Q |
| |
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|||||||| |||||| |||| |||||||||||||| ||||||| ||||||||||||||||||||||||| |
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|
| T |
38944793 |
atcaccaatgatgtattgtgacactaactgtgagggaaacaataggatcttaatagtagcttaatgaaa |
38944725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 479 - 547
Target Start/End: Complemental strand, 18329282 - 18329216
Alignment:
| Q |
479 |
atcaccaacgatgtaatgtggcactaactgtgaggcaaacaatgggatcttaatagtagcttaatgaaa |
547 |
Q |
| |
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|||||||| |||||| |||| |||||||||||||| |||| || ||||||||||||| |||||||||| |
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| T |
18329282 |
atcaccaatgatgtattgtgacactaactgtgagggaaacgataggatcttaatagt--cttaatgaaa |
18329216 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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