View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15034_low_7 (Length: 477)

Name: NF15034_low_7
Description: NF15034
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15034_low_7
NF15034_low_7
[»] chr2 (3 HSPs)
chr2 (139-462)||(21427166-21427486)
chr2 (7-146)||(21426954-21427093)
chr2 (43-103)||(29351009-29351069)
[»] scaffold1051 (1 HSPs)
scaffold1051 (198-280)||(1824-1906)
[»] chr4 (3 HSPs)
chr4 (44-101)||(45371487-45371544)
chr4 (45-104)||(48863848-48863907)
chr4 (39-104)||(45365633-45365698)
[»] chr7 (1 HSPs)
chr7 (45-103)||(30130679-30130737)
[»] chr8 (3 HSPs)
chr8 (39-73)||(12195901-12195935)
chr8 (39-73)||(12440329-12440363)
chr8 (42-103)||(4030202-4030263)
[»] chr1 (2 HSPs)
chr1 (39-101)||(24340994-24341056)
chr1 (39-101)||(24353359-24353421)
[»] chr5 (1 HSPs)
chr5 (47-104)||(9120354-9120411)


Alignment Details
Target: chr2 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 139 - 462
Target Start/End: Original strand, 21427166 - 21427486
Alignment:
Q  139 tgaaacatgagtggtgataggcaaaatagtgaaactgcaacatcaaaaatagatttgagagtaaagttgtcaggtgaacatcatcttcaacttatttcat 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||| |||    
T  21427166 tgaaacatgagtggtgataggcaaaatagtgaaactgcaacatcaaaaatagatttgagagtaaagttgtcacatgaacatcatcttcaacttattccat 21427265  T
Q  239 catttatgttttatcttttacagtatttaatatgctattgtttgtgttaatattaagcaattcgttttcttcgatagttcccactccgtaataatgtgtt 338  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  21427266 catttatgttttatcttttacagtatttaatatgctattgtttgtgttaatattaagcaattcgttttcttcgatcgttcccactccgtaataatgtgtt 21427365  T
Q  339 tccttcctttcttctattgggattttttggttgaagacatgattcnnnnnnnnnnntgttgcattgcataatgatatggagtcaatttttaagctgtgaa 438  Q
    ||||||||||||||||||||||||||||||| |||||||||||||           ||||||||||||||||||||||||||||||||||||||||||||    
T  21427366 tccttcctttcttctattgggattttttggtggaagacatgattc---aaaaaaaatgttgcattgcataatgatatggagtcaatttttaagctgtgaa 21427462  T
Q  439 aatcagttgacgatgggtactatt 462  Q
    ||||||||||||||||||||||||    
T  21427463 aatcagttgacgatgggtactatt 21427486  T

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Target: chr2; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 7 - 146
Target Start/End: Original strand, 21426954 - 21427093
Alignment:
Q  7 tcaattctattcatcatcgtataaaaagaacatggccatgtatacagagtctatgctttcactccctagcggcattgatcaagcttaagaagatgacaag 106  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21426954 tcaattctattcatcatcgtataaaaagaacgtggccatgtatacagagtctatgctttcactccctagcggcattgatcaagcttaagaagatgacaag 21427053  T
Q  107 tgtggtgataacaaataaaaagaatgttattgtgaaacat 146  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  21427054 tgtggtgataacaaataaaaagaatgttattgtgaaacat 21427093  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 43 - 103
Target Start/End: Original strand, 29351009 - 29351069
Alignment:
Q  43 catgtatacagagtctatgctttcactccctagcggcattgatcaagcttaagaagatgac 103  Q
    |||||| | |||||||||||||||||||||  | | || ||| ||||||||||||||||||    
T  29351009 catgtacagagagtctatgctttcactccccggtgacaatgagcaagcttaagaagatgac 29351069  T

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Target: scaffold1051 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: scaffold1051
Description:

Target: scaffold1051; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 198 - 280
Target Start/End: Complemental strand, 1906 - 1824
Alignment:
Q  198 agtaaagttgtcaggtgaacatcatcttcaacttatttcatcatttatgttttatcttttacagtatttaatatgctattgtt 280  Q
    |||||||||||||  | ||| ||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| |||||||    
T  1906 agtaaagttgtcatattaacttcatctttaacttatttcatcatttatgttttatcttttacattattttatatgttattgtt 1824  T

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Target: chr4 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 44 - 101
Target Start/End: Complemental strand, 45371544 - 45371487
Alignment:
Q  44 atgtatacagagtctatgctttcactccctagcggcattgatcaagcttaagaagatg 101  Q
    ||||||||||||||| ||||||||||| |||||| || ||||||||||||||||||||    
T  45371544 atgtatacagagtctctgctttcactctctagcgacaatgatcaagcttaagaagatg 45371487  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 45 - 104
Target Start/End: Original strand, 48863848 - 48863907
Alignment:
Q  45 tgtatacagagtctatgctttcactccctagcggcattgatcaagcttaagaagatgaca 104  Q
    |||||||||||||| |||||||||||||||  | || ||| |||||||||||||||||||    
T  48863848 tgtatacagagtctctgctttcactccctaatgacagtgagcaagcttaagaagatgaca 48863907  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 39 - 104
Target Start/End: Complemental strand, 45365698 - 45365633
Alignment:
Q  39 tggccatgtatacagagtctatgctttcactccctagcggcattgatcaagcttaagaagatgaca 104  Q
    |||||||||||||||||||| |||| ||||| ||| | | || ||| |||||||||||||||||||    
T  45365698 tggccatgtatacagagtctttgctgtcacttcctggtgacaatgagcaagcttaagaagatgaca 45365633  T

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Target: chr7 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 45 - 103
Target Start/End: Complemental strand, 30130737 - 30130679
Alignment:
Q  45 tgtatacagagtctatgctttcactccctagcggcattgatcaagcttaagaagatgac 103  Q
    |||||||||||||| | |||||| |||||||||||| |||| |||||||||||||||||    
T  30130737 tgtatacagagtctcttctttcattccctagcggcactgatgaagcttaagaagatgac 30130679  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 12195901 - 12195935
Alignment:
Q  39 tggccatgtatacagagtctatgctttcactccct 73  Q
    |||||||||||||||||||| ||||||||||||||    
T  12195901 tggccatgtatacagagtctctgctttcactccct 12195935  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 73
Target Start/End: Original strand, 12440329 - 12440363
Alignment:
Q  39 tggccatgtatacagagtctatgctttcactccct 73  Q
    |||||||||||||||||||| ||||||||||||||    
T  12440329 tggccatgtatacagagtctctgctttcactccct 12440363  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 42 - 103
Target Start/End: Complemental strand, 4030263 - 4030202
Alignment:
Q  42 ccatgtatacagagtctatgctttcactccctagcggcattgatcaagcttaagaagatgac 103  Q
    ||||||| ||||||||| |||||||||||||| |   || ||| ||||||||||||||||||    
T  4030263 ccatgtacacagagtctctgctttcactccctggtaacaatgagcaagcttaagaagatgac 4030202  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 24340994 - 24341056
Alignment:
Q  39 tggccatgtatacagagtctatgctttcactccctagcggcattgatcaagcttaagaagatg 101  Q
    |||| |||||||| |||||| |||||||||||||||| | || |||  |||||||||||||||    
T  24340994 tggctatgtatacggagtctttgctttcactccctagtgacaatgaggaagcttaagaagatg 24341056  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 39 - 101
Target Start/End: Original strand, 24353359 - 24353421
Alignment:
Q  39 tggccatgtatacagagtctatgctttcactccctagcggcattgatcaagcttaagaagatg 101  Q
    |||| |||||||| |||||| |||||||||||||||| | || |||  |||||||||||||||    
T  24353359 tggctatgtatacggagtctttgctttcactccctagtgacaatgaggaagcttaagaagatg 24353421  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 47 - 104
Target Start/End: Original strand, 9120354 - 9120411
Alignment:
Q  47 tatacagagtctatgctttcactccctagcggcattgatcaagcttaagaagatgaca 104  Q
    |||||||||||| |||||||||||||| | | || ||| |||||||||| ||||||||    
T  9120354 tatacagagtctctgctttcactccctggtgacaatgaacaagcttaaggagatgaca 9120411  T

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