View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15035_high_4 (Length: 391)
Name: NF15035_high_4
Description: NF15035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15035_high_4 |
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Alignment Details
Target: chr4 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 12 - 375
Target Start/End: Complemental strand, 56277641 - 56277275
Alignment:
| Q |
12 |
cagagatagatggttggatttggggaaggaaaacaggtacggcagcaaagaattcctttacaagatgacaaaagcacaacatcttgaggaagaaaagaaa |
111 |
Q |
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| T |
56277641 |
cagagatagatggttggatttggggaaggaaaacaggtacggcagcaaacaattcctttacaggaagccaaaacaacaacatcttgaggaagaaaagaaa |
56277542 |
T |
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| Q |
112 |
aaacattgtggtgaacaactagtttagcagcgtt---tttgggttggacaggaatgtaactaatggttttaacatcgtgtttgcagaacatgtacctatc |
208 |
Q |
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| T |
56277541 |
aaacattgtggtgaacaactagtttagcagcgttgtttttgggttccacaggaatgtaactaatggttttaacatcgtgtttgcagaacatgtacctatc |
56277442 |
T |
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| Q |
209 |
ttgaacaataaaagcatttaaaacaagattagtgtttttgagttgatctttgatgaatgaacggcttgaaatgatgttgttccaccctctggaaatgcat |
308 |
Q |
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| T |
56277441 |
ttgaacaataaaaccatttaaaacaagatttgtgtttttgagttgatctttgatgaatgaacggcttgaaatgatgtggttccaacctctggaaatgcat |
56277342 |
T |
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| Q |
309 |
ttcatgctaagcaaaggcttggccggaacgcgtgtgagaatatgagagattacgtctctgttcagag |
375 |
Q |
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| T |
56277341 |
ttcatgctaagcaaaggtttggccggaacgcgtgtgagaatatgagagatgacgtctctgttgagag |
56277275 |
T |
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