View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF15035_high_9 (Length: 284)
Name: NF15035_high_9
Description: NF15035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15035_high_9 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 230; Significance: 1e-127; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 1 - 265
Target Start/End: Original strand, 12825321 - 12825586
Alignment:
| Q |
1 |
aaagcagccacgtaaggcattcc-tcggattccaacaccattcataatacatacaaggaggcatagaaattctatccaacgaccaccgccaagtcaaccc |
99 |
Q |
| |
|
||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
12825321 |
aaagcagccgcgtaaggcattccctcggattccaacaccattcataatacatacaaggaggcatagaaattctatccaacgaccaccgccaagtcaacac |
12825420 |
T |
|
| Q |
100 |
ctttacatcatccaccatttcatccaccgccgagttccgattattaaaaatcttatcattccttgctttccacaaaaccaaaatcgtcgaatgccaaata |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||| |||| |
|
|
| T |
12825421 |
ctttacatcatccaccatttcatccaccgctgagttccgattattaaaaatcttatcattccttgctttccacaaaaccaaactcgtagaatgccgaata |
12825520 |
T |
|
| Q |
200 |
agtcttaaaccattacggattcgcttattcctctctccaccacaccaacactcccaatgaacgaat |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
12825521 |
agtcttaaaccattacggattcgcttattcctctctccaccacaccaacactcccaaagaacgaat |
12825586 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 29 - 173
Target Start/End: Complemental strand, 35400893 - 35400749
Alignment:
| Q |
29 |
ttccaacaccattcataatacatacaaggaggcatagaaattctatccaacgaccaccgccaagtcaacccctttacatcatccaccatttcatccaccg |
128 |
Q |
| |
|
|||||||||||||| ||||||||||| || |||||||| ||||||||||| | ||| | ||||| ||| |||| |||||||||||||||||| |||| |
|
|
| T |
35400893 |
ttccaacaccattcgtaatacatacacggtggcatagagattctatccaaagcccatctccaagacaaaaccttgacatcatccaccatttcacccacat |
35400794 |
T |
|
| Q |
129 |
ccgagttccgattattaaaaatcttatcattccttgctttccaca |
173 |
Q |
| |
|
|| || || |||||||||| |||||||||||| |||||||||| |
|
|
| T |
35400793 |
acggatttcggttattaaaaaccttatcattcctcgctttccaca |
35400749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 6e-37; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 14 - 255
Target Start/End: Complemental strand, 37035710 - 37035468
Alignment:
| Q |
14 |
aaggcattcc-tcggattccaacaccattcataatacatacaaggaggcatagaaattctatccaacgaccaccgccaagtcaacccctttacatcatcc |
112 |
Q |
| |
|
|||||||||| |||||| ||||||||| ||||| |||||||||||||||| | |||| | ||||||||||||||||||||||| |||| | ||| ||| |
|
|
| T |
37035710 |
aaggcattccctcggatcccaacaccactcatagaacatacaaggaggcattgcaattatctccaacgaccaccgccaagtcaataccttaatatcctcc |
37035611 |
T |
|
| Q |
113 |
accatttcatccaccgccgagttccgattattaaaaatcttatcattccttgctttccacaaaaccaaaatcgtcgaatgccaaataagtcttaaaccat |
212 |
Q |
| |
|
|| || || ||||| ||| |||||||||||||||||||| ||||| || |||||||| |||||| ||||||| ||||||||| | |||||| || | |
|
|
| T |
37035610 |
acaatatccaccacctccggattccgattattaaaaatcttgtcatttctagctttccataaaacccaaatcgtaacatgccaaattaatcttaacccct |
37035511 |
T |
|
| Q |
213 |
tacggattcgcttattcctctctccaccacaccaacactccca |
255 |
Q |
| |
|
||| || |||||| ||||||| || |||| |||||||||||| |
|
|
| T |
37035510 |
gacgaatacgcttaatcctctccccgccactccaacactccca |
37035468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 35 - 90
Target Start/End: Complemental strand, 24189660 - 24189605
Alignment:
| Q |
35 |
caccattcataatacatacaaggaggcatagaaattctatccaacgaccaccgcca |
90 |
Q |
| |
|
||||||||||| |||||||| ||||||||||| ||||||||||| ||||| ||||| |
|
|
| T |
24189660 |
caccattcatagtacatacacggaggcatagagattctatccaaagaccatcgcca |
24189605 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 256
Target Start/End: Complemental strand, 24189517 - 24189451
Alignment:
| Q |
190 |
atgccaaataagtcttaaaccattacggattcgcttattcctctctccaccacaccaacactcccaa |
256 |
Q |
| |
|
||||||||||||||||| || ||||| |||| ||||||| ||| ||||||| ||||||||||||| |
|
|
| T |
24189517 |
atgccaaataagtcttaggcccttacgaattctcttattctgctcgccaccactccaacactcccaa |
24189451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 26 - 255
Target Start/End: Complemental strand, 47820348 - 47820122
Alignment:
| Q |
26 |
ggattccaacaccattcataatacatacaaggaggcatagaaattctatccaacgaccaccgccaagtcaacccctttacatcatccaccatttcatcca |
125 |
Q |
| |
|
|||||||||||||| ||||| ||||||| |||| ||| | ||| | ||||||||||||| |||||| | | |||| | ||| ||||| || ||||| |
|
|
| T |
47820348 |
ggattccaacaccactcatagaacatacacggagacattgccattatctccaacgaccaccaccaagtaaccaccttaatatcctccacaat---atcca |
47820252 |
T |
|
| Q |
126 |
ccgccgagttccgattattaaaaatcttatcattccttgctttccacaaaaccaaaatcgtcgaatgccaaataagtcttaaaccattacggattcgctt |
225 |
Q |
| |
|
|| || | ||||||||||| || ||||| |||||||| |||||||| |||||| ||||||||| ||||||||| | |||||| || ||| || | ||| |
|
|
| T |
47820251 |
ccaccaaattccgattattgaagatcttgtcattcctagctttccataaaacccaaatcgtcgcatgccaaattaatcttaacccccgacgaatactctt |
47820152 |
T |
|
| Q |
226 |
attcctctctccaccacaccaacactccca |
255 |
Q |
| |
|
|||||||| ||||| |||||||||||||| |
|
|
| T |
47820151 |
cttcctctccccaccgcaccaacactccca |
47820122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 157 - 256
Target Start/End: Original strand, 34774684 - 34774783
Alignment:
| Q |
157 |
attccttgctttccacaaaaccaaaatcgtcgaatgccaaataagtcttaaaccattacggattcgcttattcctctctccaccacaccaacactcccaa |
256 |
Q |
| |
|
|||||| |||||||| || ||| ||||||| | |||||||||||| ||||| || ||||| ||| |||||||||||| || || ||||||||||||||| |
|
|
| T |
34774684 |
attcctagctttccataacacccaaatcgtagtatgccaaataagccttaatccgttacgagttctcttattcctctcccctccgcaccaacactcccaa |
34774783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 256
Target Start/End: Complemental strand, 11780156 - 11779930
Alignment:
| Q |
30 |
tccaacaccattcataatacatacaaggaggcatagaaattctatccaacgaccaccgccaagtcaacccctttacatcatccaccatttcatccaccgc |
129 |
Q |
| |
|
||||| |||||||||| |||||||| || |||||||||||||| ||||| ||||| ||||| | | | |||| | || ||||| ||||| ||||| | |
|
|
| T |
11780156 |
tccaaaaccattcatagtacatacacgggggcatagaaattctgtccaaagaccaacgccacgaccaaaccttaatctcctccacaatttcttccacatc |
11780057 |
T |
|
| Q |
130 |
cgagttccgattattaaaaatcttatcattccttgctttccacaaaaccaaaatcgtcgaatgccaaataagtcttaaaccattacggattcgcttattc |
229 |
Q |
| |
|
|| ||||| |||||||| ||||||||||||| |||||||| || | | ||| | ||||||||||||| | || |||| ||||| ||||| | |
|
|
| T |
11780056 |
cggattccggccattaaaaactctatcattccttgccttccacaacccccacaccgttgcgtgccaaataagtcgaagccccttacagattctcttatcc |
11779957 |
T |
|
| Q |
230 |
ctctctccaccacaccaacactcccaa |
256 |
Q |
| |
|
|||||| |||||| ||||||||||||| |
|
|
| T |
11779956 |
ctctctacaccactccaacactcccaa |
11779930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 157 - 256
Target Start/End: Original strand, 42748870 - 42748969
Alignment:
| Q |
157 |
attccttgctttccacaaaaccaaaatcgtcgaatgccaaataagtcttaaaccattacggattcgcttattcctctctccaccacaccaacactcccaa |
256 |
Q |
| |
|
|||||| |||||||| || ||| ||||||| | |||||||||||| ||||| || |||| ||| |||||||||||| || || | ||||||||||||| |
|
|
| T |
42748870 |
attcctagctttccataacacccaaatcgtggtatgccaaataagccttaatccgctacgagttctcttattcctctcccctccgctccaacactcccaa |
42748969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 55
Target Start/End: Original strand, 47318630 - 47318661
Alignment:
| Q |
24 |
tcggattccaacaccattcataatacatacaa |
55 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
47318630 |
tcggattccaacaccattcataatacatacaa |
47318661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 146 - 186
Target Start/End: Complemental strand, 38553154 - 38553114
Alignment:
| Q |
146 |
aaaatcttatcattccttgctttccacaaaaccaaaatcgt |
186 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||| ||||||| |
|
|
| T |
38553154 |
aaaatcttatcattcctagctttccacaacacccaaatcgt |
38553114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University