View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15035_low_1 (Length: 631)
Name: NF15035_low_1
Description: NF15035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15035_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 281; Significance: 1e-157; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 287 - 613
Target Start/End: Original strand, 32377519 - 32377834
Alignment:
| Q |
287 |
attacgatcatcttctagttcttcgtgtgtgaaatcttctatgctatccattgcatgcatgaagatgtaaaattaatattcctaggaaaaatatggttac |
386 |
Q |
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| T |
32377519 |
attacgatcatcttctagttcttcgtgtgtgaaatcttctatgctatccattgcatgcatgaagatgtaaaattaatattcctaggaaaaatatggttac |
32377618 |
T |
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| Q |
387 |
gtagttaattaaccatgtgcgtgtctgatggttttaaattgcagttgcagttactactatcgttatctcttactttgtgtagaattgcggtaaccttgat |
486 |
Q |
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| T |
32377619 |
gtagttaattaaccatgtgcgtgtctgatggttttaaattgcagttgcagttactactatcgtgatctcttactttgtgtagaa-----------ttgat |
32377707 |
T |
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| Q |
487 |
tgcgattatgttgtggttgtgaagacatgaaaattataatgttgtgtaacttttttgttttgtttatgtctttcacatatgcatgttcttgatgtgtaac |
586 |
Q |
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| T |
32377708 |
tgcgattatgttgtggttgcgaagacatgaaaattataatgttgtgtaacttttttgttttgtttatgtctttcacatatgcatgttcttgatgtgtaac |
32377807 |
T |
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| Q |
587 |
aaaaatggtagttcatagagtgggaga |
613 |
Q |
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| T |
32377808 |
aaaaatggtagttcatagagtgggaga |
32377834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 32377241 - 32377479
Alignment:
| Q |
9 |
acatcatcgctttgaatgacatcaaggaaaggagtaaggtaaatggaaggatcgatagtgcgccattcttgttgaggattgaatatgagagaacggagag |
108 |
Q |
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| T |
32377241 |
acatcatcgctttgaatgacatcaaggaaaggagtaaggtaaatggaaggatcgatagtgcgccattcttgttgaggattgaatatgagagaacggagag |
32377340 |
T |
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| Q |
109 |
accttaaagaattaataatggaagaatcgtaggattcttcaggagaagatatgttgtagacaggagtaaattcgggataacgtcgtatcactgctagaac |
208 |
Q |
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| T |
32377341 |
accttaaagaattaataatggaagaatcgtaggattcttcaggagaagatatgttgtagacaggagtaaattcgggataacgtcgtatcactgctagaac |
32377440 |
T |
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| Q |
209 |
tgcaccaacttcagtgcttaacatgcatgagagtcctag |
247 |
Q |
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| T |
32377441 |
tgcaccaacttcagtgcttaacatgcatgagagtcctag |
32377479 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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