View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15035_low_13 (Length: 270)

Name: NF15035_low_13
Description: NF15035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15035_low_13
NF15035_low_13
[»] chr4 (9 HSPs)
chr4 (17-232)||(35106998-35107214)
chr4 (17-197)||(35072682-35072862)
chr4 (17-197)||(35097820-35098000)
chr4 (17-197)||(35098109-35098289)
chr4 (17-196)||(36940478-36940657)
chr4 (26-144)||(36296508-36296626)
chr4 (83-198)||(36935858-36935974)
chr4 (27-156)||(36961377-36961507)
chr4 (72-120)||(36953720-36953768)
[»] chr6 (2 HSPs)
chr6 (17-199)||(24040736-24040918)
chr6 (17-197)||(24014181-24014361)
[»] chr5 (1 HSPs)
chr5 (62-156)||(34919141-34919235)


Alignment Details
Target: chr4 (Bit Score: 197; Significance: 1e-107; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 17 - 232
Target Start/End: Original strand, 35106998 - 35107214
Alignment:
Q  17 aagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaa 116  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  35106998 aagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgcta 35107097  T
Q  117 tggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctctggtt-aactcagaacaagctttg 215  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||    
T  35107098 tggagaatggtgttctcgctgtcactgtccctaaggaagagatcaagaagcctgaagtcaaagccattgaaatctctggttaaactcagaacaagctttg 35107197  T
Q  216 ttactcgtcttttgttt 232  Q
    |||||||||||||||||    
T  35107198 ttactcgtcttttgttt 35107214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 35072862 - 35072682
Alignment:
Q  17 aagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  35072862 aagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagataaccagagaatgcgaaaatggatcaagtgaaagctgcaa 35072763  T
Q  117 tggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctctggtt 197  Q
    |||||||||||||||||||||| ||||| || || |||||  | ||||| |||||  | ||  |||| |||||||||||||    
T  35072762 tggagaatggtgttctcactgttactgttccaaaagaagaagttaagaaacctgatgttaagtccatcgaaatctctggtt 35072682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 35097820 - 35098000
Alignment:
Q  17 aagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaa 116  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||    
T  35097820 aagaacgatcaatggcatcgtgtggagcgtagcagtgggaaattcatgaggaggttcagattgcctgagaatgcgaaaatggaccaagtgaaagctgcaa 35097919  T
Q  117 tggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctctggtt 197  Q
    |||||||||||||||||||||| ||||| || || ||||||||||||||||||||  | ||  ||||||||||||||||||    
T  35097920 tggagaatggtgttctcactgttactgttccaaaagaagagatcaagaagcctgatgttaagtccattgaaatctctggtt 35098000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 17 - 197
Target Start/End: Original strand, 35098109 - 35098289
Alignment:
Q  17 aagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaa 116  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||| ||||||||||||||||    
T  35098109 aagaacgatcaatggcatcgtgtggagcgtagcagtgggaaattcatgaggaggttcagattgcctgagaatgcgaaaatggaccaagtgaaagctgcaa 35098208  T
Q  117 tggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctctggtt 197  Q
    |||||||||||||||||||||| ||||| || || ||||||||||||||||||||  | ||  ||||||||||||||||||    
T  35098209 tggagaatggtgttctcactgttactgttccaaaagaagagatcaagaagcctgatgttaagtccattgaaatctctggtt 35098289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 17 - 196
Target Start/End: Complemental strand, 36940657 - 36940478
Alignment:
Q  17 aagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaa 116  Q
    ||||| |||||||||||||  ||||||||||||||||| || ||||||||||| || ||||| || |||||||| |||||||||||| ||||||||||||    
T  36940657 aagaacgatcaatggcatcccgtggagcgtagcagtgggaagttcatgaggagattaagattgcctgagaatgctaaaatggatcaaatgaaagctgcaa 36940558  T
Q  117 tggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctctggt 196  Q
    ||||||||||  |||||||||||||||| |||||  ||||||||||||| | |||| | ||| ||||||| |||||||||    
T  36940557 tggagaatggcattctcactgtcactgtgcctaaaaaagagatcaagaatcatgaagttaaaaccattgatatctctggt 36940478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 144
Target Start/End: Complemental strand, 36296626 - 36296508
Alignment:
Q  26 caatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaatggagaatg 125  Q
    ||||||||||| |||||||||||||||||||| || ||||||||||| ||||| || || ||||| || |||||||| ||||||||||||||||||||||    
T  36296626 caatggcatcgcgtggagcgtagcagtggaaagtttatgaggaggttcagattgcccgaaaatgccaagatggatcaggtgaaagctgcaatggagaatg 36296527  T
Q  126 gtgttctcactgtcactgt 144  Q
    ||||||||||||| |||||    
T  36296526 gtgttctcactgtaactgt 36296508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 83 - 198
Target Start/End: Complemental strand, 36935974 - 36935858
Alignment:
Q  83 gagaatgcgaaaatggatcaagtgaaagctgcaa-tggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagcc 181  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| || || ||  | |||||| | |||||||||||| | ||  ||    
T  36935974 gagaatgctaaaatggatcaagtgaaagctgcaattggagaatggtgttctcactgttaccgtgccacaagaagaggttaagaagcctgaagtgaagacc 36935875  T
Q  182 attgaaatctctggtta 198  Q
    ||||| |||||||||||    
T  36935874 attgatatctctggtta 36935858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 27 - 156
Target Start/End: Original strand, 36961377 - 36961507
Alignment:
Q  27 aatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagc-tgcaatggagaatg 125  Q
    |||||||| | ||||||| ||||||||| ||||||||||||| |||||||||  |||||||||| || |||||||| ||||| ||   ||  ||||||||    
T  36961377 aatggcattgcgtggagcttagcagtgggaaattcatgaggaagtttagattggcagagaatgctaagatggatcaggtgaatgcaaacatgggagaatg 36961476  T
Q  126 gtgttctcactgtcactgtccctaaggaaga 156  Q
    ||||||||||||| ||| | |||||||||||    
T  36961477 gtgttctcactgtaactattcctaaggaaga 36961507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 72 - 120
Target Start/End: Complemental strand, 36953768 - 36953720
Alignment:
Q  72 ttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaatgga 120  Q
    ||||||| || || ||||| |||| ||||||||||||||||||||||||    
T  36953768 ttagattgcctgacaatgctaaaacggatcaagtgaaagctgcaatgga 36953720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 143; Significance: 3e-75; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 17 - 199
Target Start/End: Complemental strand, 24040918 - 24040736
Alignment:
Q  17 aagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaa 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24040918 aagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaa 24040819  T
Q  117 tggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctctggttaa 199  Q
    ||||||||||| ||||||||||||||||||||||||||||  | ||||||||| || | ||  ||||||| ||||||||||||    
T  24040818 tggagaatggtattctcactgtcactgtccctaaggaagaagttaagaagcctcaagtgaagaccattgatatctctggttaa 24040736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 17 - 197
Target Start/End: Complemental strand, 24014361 - 24014181
Alignment:
Q  17 aagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaa 116  Q
    ||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||| || || || || || |||||||||||||||||||||||||||||||    
T  24014361 aagaacgatcaatggcatcgtgtggagcgcagcagcggaaagttcatgaggagattcaggttgcccgaaaatgcgaaaatggatcaagtgaaagctgcaa 24014262  T
Q  117 tggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctctggtt 197  Q
    |||||||||||||||||||||| ||||| || || |||||  | ||||| |||||  | ||  |||| |||||||||||||    
T  24014261 tggagaatggtgttctcactgttactgttccaaaagaagaagttaagaaacctgatgttaagtccatcgaaatctctggtt 24014181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 62 - 156
Target Start/End: Original strand, 34919141 - 34919235
Alignment:
Q  62 atgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgtcactgtccctaaggaaga 156  Q
    |||||||||||||| || || |||||||  ||||||||||| || |||||||  ||||||||||| ||||| ||||| ||||| |||||||||||    
T  34919141 atgaggaggtttaggttgcctgagaatgttaaaatggatcaggttaaagctggtatggagaatggggttcttactgttactgttcctaaggaaga 34919235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University