View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15035_low_2 (Length: 612)

Name: NF15035_low_2
Description: NF15035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15035_low_2
NF15035_low_2
[»] chr7 (12 HSPs)
chr7 (13-422)||(22524935-22525324)
chr7 (15-402)||(22534561-22534929)
chr7 (499-597)||(22526372-22526470)
chr7 (13-139)||(21218469-21218596)
chr7 (428-479)||(22533584-22533635)
chr7 (266-368)||(35205922-35206024)
chr7 (253-362)||(21210466-21210575)
chr7 (269-368)||(21218709-21218808)
chr7 (13-60)||(20057827-20057874)
chr7 (18-60)||(19645455-19645497)
chr7 (18-59)||(19358206-19358247)
chr7 (18-58)||(19350832-19350872)
[»] chr4 (1 HSPs)
chr4 (12-136)||(2911254-2911379)
[»] scaffold0128 (1 HSPs)
scaffold0128 (13-139)||(4319-4446)
[»] chr5 (3 HSPs)
chr5 (13-133)||(42298299-42298420)
chr5 (508-548)||(19754273-19754314)
chr5 (16-61)||(23087049-23087094)
[»] chr8 (1 HSPs)
chr8 (17-60)||(27618723-27618766)
[»] chr2 (4 HSPs)
chr2 (13-59)||(18908534-18908580)
chr2 (15-58)||(21021044-21021087)
chr2 (17-58)||(20712292-20712333)
chr2 (18-58)||(18913287-18913327)
[»] scaffold0242 (2 HSPs)
scaffold0242 (245-343)||(13707-13805)
scaffold0242 (245-343)||(22542-22640)
[»] chr6 (1 HSPs)
chr6 (18-56)||(6942715-6942753)
[»] scaffold0354 (1 HSPs)
scaffold0354 (267-332)||(7469-7534)
[»] scaffold0097 (1 HSPs)
scaffold0097 (17-58)||(16131-16172)


Alignment Details
Target: chr7 (Bit Score: 267; Significance: 1e-149; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 13 - 422
Target Start/End: Original strand, 22524935 - 22525324
Alignment:
13 agaagaacttactttcaagaaggtgaaaccaagctttcaacataatccaccattaaccaacgtatctttttgttaattctagttttctttgctttgttag 112  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||    
22524935 agaagaacttactttcaagaagttgaaaccaagctttcaacataatccaccattaaccaacgtatctttttgttaattctagttttctttgctttgctag 22525034  T
113 ttatctccggttatagagaattgctcgatcttcttggttgcttttcaatactagcgtatccccattctgagaaagatgcaataatggtcttaatattaac 212  Q
    || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||   ||||||||||||||||||     
22525035 ttctctccggttatagagaattgctcgatcttcttggttgcttttcaatactatcgtatccccattctcagaaagatg---taatggtcttaatattaaa 22525131  T
213 agtgagctacgaaaaatttcatagctcgatcttcatgattcatttgaatattttgatagctaaatttaaggaacgggatccaagacttatcatctcgaaa 312  Q
    |||||||||| |  |||              |||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||    
22525132 agtgagctactaccaat--------------ttcatgattcatttgaatattttgatagctaaatttaaggaacgggatccaagactt---atctcgaaa 22525214  T
313 ttctttcatttgccatatcagaaaatcggttccctttatatcatgataaaaacaaagtaagcccttcaagacacaaacatgttctggtactggtgtaatt 412  Q
    ||  |||||||||||||||| |||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||  ||||    
22525215 tttcttcatttgccatatcataaaatcggttccctttatgtcatgataaaaacaaaggaagcccttcaagacacaaacatgttctggtactggtacaatt 22525314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 15 - 402
Target Start/End: Complemental strand, 22534929 - 22534561
Alignment:
15 aagaacttactttcaagaaggtgaaaccaagctttcaacataatccaccattaaccaacgtatctttttgttaattctagttttctttgctttgttagtt 114  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
22534929 aagaacttactttcaagaaggtgaaaccaagctttcgacataatcgaccattaaccaatgtatctttctgttaattctagttttctttgctttgttagtt 22534830  T
115 atctccggttatagagaattgctcgatcttcttggttgcttttcaatactagcgtatccccattctgagaaagatgcaataatggtcttaatattaacag 214  Q
    |  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||   ||||||||||||||||| ||    
22534829 a--tccggttataaagaattgctcgatcttcttggttgcttttcaatactagcgtatccccattctcagaaagatgc---aatggtcttaatattaaaag 22534735  T
215 tgagctacgaaaaatttcatagctcgatcttcatgattcatttgaatattttgatagctaaatttaaggaacgggatccaagacttatcatctcgaaatt 314  Q
    |||||||||||||||||||||              ||||| |  ||||||||||||||| |||| ||  ||  |  |||||||||| ||||||| |||||    
22534734 tgagctacgaaaaatttcata--------------attcactccaatattttgatagctgaattgaactaattgtgtccaagacttttcatctccaaatt 22534649  T
315 ctttcatttgccatatcagaaaatcggttccctttatatcatgataaaaacaaagtaagcccttcaagacacaaacatgttctggtac 402  Q
    | | |||||||||||| | |||||||||||||||||| ||||||||||||||||| | |||||||| ||||||||||||||| |||||    
22534648 cctccatttgccatatgataaaatcggttccctttatgtcatgataaaaacaaaggacgcccttcaggacacaaacatgttccggtac 22534561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 499 - 597
Target Start/End: Original strand, 22526372 - 22526470
Alignment:
499 gagcattacagttgaagagaatggctaaaaattcaaaggaaagcaataaaaactgaaattcctaaatcttaaactcagctatgagcttgttgagatttg 597  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
22526372 gagcattacagttgaagagaatggctaaaaattcaaagggaagcaataaaaactgaaattcctaaatcttaaactcagctatgagcttgttgagatttg 22526470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 13 - 139
Target Start/End: Original strand, 21218469 - 21218596
Alignment:
13 agaagaacttactttcaagaaggtgaaaccaagctttcaacataatc---caccattaaccaacgtatctttttgttaattctagttttctttgctttgt 109  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||    ||     |||||| |||||||||||||||||||| ||||||| ||||||    
21218469 agaagaacttactttcaagaagttgaaaccaagctttcgacataatcatagactgaggaccaacttatctttttgttaattctagctttctttactttgt 21218568  T
110 tagttatctccggttatagagaattgctcg 139  Q
    ||||  ||| |||||||||| ||| |||||    
21218569 tagt--tcttcggttatagataatcgctcg 21218596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 428 - 479
Target Start/End: Complemental strand, 22533635 - 22533584
Alignment:
428 aaagatttatcatttatattacgattttaatataaaaagtcaaacgaacatt 479  Q
    ||||||||||| ||| |||||||||||||||| |||||||||||||||||||    
22533635 aaagatttatcgtttgtattacgattttaatacaaaaagtcaaacgaacatt 22533584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 266 - 368
Target Start/End: Original strand, 35205922 - 35206024
Alignment:
266 tgatagctaaatttaaggaacgggatccaagacttatcatctcgaaattctttcatttgccatatcagaaaatcggttccctttatatcatgataaaaac 365  Q
    ||||||||||||||||||||  |  |||||||||| |||| || ||||||| |||| | |||||| | |||||| ||||| || | ||||||||||||||    
35205922 tgatagctaaatttaaggaattgagtccaagacttgtcatttccaaattctgtcatcttccatataacaaaatcagttccattgaaatcatgataaaaac 35206021  T
366 aaa 368  Q
    |||    
35206022 aaa 35206024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 253 - 362
Target Start/End: Original strand, 21210466 - 21210575
Alignment:
253 catttgaatattttgatagctaaatttaaggaacgggatccaagacttatcatctcgaaattctttcatttgccatatcagaaaatcggttccctttata 352  Q
    |||||||||||| ||||||||||||||||||||  |  |||||||||| ||||||| ||| | | |||| | |||||| | |||||| ||||| || | |    
21210466 catttgaatattgtgatagctaaatttaaggaatagagtccaagacttgtcatctccaaactttgtcatcttccatataacaaaatcagttccgttgaaa 21210565  T
353 tcatgataaa 362  Q
    ||||||||||    
21210566 tcatgataaa 21210575  T

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Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 269 - 368
Target Start/End: Original strand, 21218709 - 21218808
Alignment:
269 tagctaaatttaaggaacgggatccaagacttatcatctcgaaattctttcatttgccatatcagaaaatcggttccctttatatcatgataaaaacaaa 368  Q
    ||||||||||| |||||  |  |||||||||||||||||| ||||||  ||||||||||||| |  ||||| ||||| || | ||| |||||||||||||    
21218709 tagctaaatttgaggaattgagtccaagacttatcatctccaaattccgtcatttgccatataaccaaatcagttccattgaaatcgtgataaaaacaaa 21218808  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 60
Target Start/End: Original strand, 20057827 - 20057874
Alignment:
13 agaagaacttactttcaagaaggtgaaaccaagctttcaacataatcc 60  Q
    ||||||||||||| |||| ||| |||| ||||||||||||||||||||    
20057827 agaagaacttactatcaacaagttgaagccaagctttcaacataatcc 20057874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 19645455 - 19645497
Alignment:
18 aacttactttcaagaaggtgaaaccaagctttcaacataatcc 60  Q
    ||||||||||||| ||| ||||||||| |||||||||||||||    
19645455 aacttactttcaacaagttgaaaccaaactttcaacataatcc 19645497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 18 - 59
Target Start/End: Complemental strand, 19358247 - 19358206
Alignment:
18 aacttactttcaagaaggtgaaaccaagctttcaacataatc 59  Q
    ||||||||||||||| | |||||| |||||||||||||||||    
19358247 aacttactttcaagaggatgaaactaagctttcaacataatc 19358206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 19350832 - 19350872
Alignment:
18 aacttactttcaagaaggtgaaaccaagctttcaacataat 58  Q
    ||||||||||||||| | |||||| ||||||||||||||||    
19350832 aacttactttcaagaggttgaaactaagctttcaacataat 19350872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 12 - 136
Target Start/End: Complemental strand, 2911379 - 2911254
Alignment:
12 gagaagaacttactttcaagaaggtgaaaccaagctttcaacataatccaccatt---aaccaacgtatctttttgttaattctagttttctttgctttg 108  Q
    ||||||||||||||||||||||| ||| ||||||||||| ||||||||   |||    |||||||||||| | |||| ||||||||||||||||||| ||    
2911379 gagaagaacttactttcaagaagttgataccaagctttctacataatcgttcatagaaaaccaacgtatcctgttgtcaattctagttttctttgctctg 2911280  T
109 ttagttatctccggttatagagaattgc 136  Q
    |||||  |||||||||||||||||||||    
2911279 ttagt--tctccggttatagagaattgc 2911254  T

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Target: scaffold0128 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 13 - 139
Target Start/End: Complemental strand, 4446 - 4319
Alignment:
13 agaagaacttactttcaagaaggtgaaaccaagctttcaacataatccaccatt---aaccaacgtatctttttgttaattctagttttctttgctttgt 109  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||   ||||   |||||||||||||||||||| | | ||||||||||||||||||    
4446 agaagaacttactttcaagaagttgaaaccaagctttcgacataatctttcattgggaaccaacgtatctttttgttgaatgtagttttctttgctttgt 4347  T
110 tagttatctccggttatagagaattgctcg 139  Q
    | ||  |||| ||||||| ||||| |||||    
4346 ttgt--tctcaggttataaagaatcgctcg 4319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 51; Significance: 6e-20; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 13 - 133
Target Start/End: Complemental strand, 42298420 - 42298299
Alignment:
13 agaagaacttactttcaagaaggtgaaaccaagctttcaacataatccaccatt---aaccaacgtatctttttgttaattctagttttctttgctttgt 109  Q
    |||||||||||||||||||||| ||||||||||||||| ||||||||   ||||    |||||| ||||||| ||||||| ||||||||||||||| |||    
42298420 agaagaacttactttcaagaagttgaaaccaagctttcgacataatctttcattgaggaccaacatatctttctgttaatcctagttttctttgctctgt 42298321  T
110 tagttatctccggttatagagaat 133  Q
    | ||  |||| |||||||||||||    
42298320 ttgt--tctcaggttatagagaat 42298299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 508 - 548
Target Start/End: Original strand, 19754273 - 19754314
Alignment:
508 agttgaagagaatggct-aaaaattcaaaggaaagcaataaa 548  Q
    ||||||||||||||||| ||||||||| ||||||||||||||    
19754273 agttgaagagaatggcttaaaaattcagaggaaagcaataaa 19754314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 61
Target Start/End: Complemental strand, 23087094 - 23087049
Alignment:
16 agaacttactttcaagaaggtgaaaccaagctttcaacataatcca 61  Q
    ||||||||||| ||| |||  |||||||||||||||||||||||||    
23087094 agaacttacttccaacaagtcgaaaccaagctttcaacataatcca 23087049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 17 - 60
Target Start/End: Complemental strand, 27618766 - 27618723
Alignment:
17 gaacttactttcaagaaggtgaaaccaagctttcaacataatcc 60  Q
    |||||||||||||||||  |||||||||||||||||||||||||    
27618766 gaacttactttcaagaaattgaaaccaagctttcaacataatcc 27618723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 59
Target Start/End: Original strand, 18908534 - 18908580
Alignment:
13 agaagaacttactttcaagaaggtgaaaccaagctttcaacataatc 59  Q
    |||| ||||||||||||||| | ||||||||||||||||||||||||    
18908534 agaaaaacttactttcaagaggttgaaaccaagctttcaacataatc 18908580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 58
Target Start/End: Original strand, 21021044 - 21021087
Alignment:
15 aagaacttactttcaagaaggtgaaaccaagctttcaacataat 58  Q
    |||||||||||||||| ||| ||||||||| |||||||||||||    
21021044 aagaacttactttcaacaagttgaaaccaaactttcaacataat 21021087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 20712292 - 20712333
Alignment:
17 gaacttactttcaagaaggtgaaaccaagctttcaacataat 58  Q
    |||||||||||||| ||| ||||||||||||||| |||||||    
20712292 gaacttactttcaacaagttgaaaccaagctttcgacataat 20712333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 18 - 58
Target Start/End: Original strand, 18913287 - 18913327
Alignment:
18 aacttactttcaagaaggtgaaaccaagctttcaacataat 58  Q
    ||||||||||||||| | ||| |||||||||||||||||||    
18913287 aacttactttcaagaggttgataccaagctttcaacataat 18913327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: scaffold0242
Description:

Target: scaffold0242; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 343
Target Start/End: Original strand, 13707 - 13805
Alignment:
245 tcatgattcatttgaatattttgatagctaaatttaaggaacgggatccaagacttatcatctcgaaattctttcatttgccatatcagaaaatcggtt 343  Q
    |||||||| ||||||| ||||||||| || | |||||| ||| |  ||||||| | ||||| ||  ||||| ||||| |||||||| ||||||||||||    
13707 tcatgatttatttgaagattttgataccttattttaagaaactgagtccaagattcatcatttcctaattccttcatctgccatataagaaaatcggtt 13805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0242; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 343
Target Start/End: Original strand, 22542 - 22640
Alignment:
245 tcatgattcatttgaatattttgatagctaaatttaaggaacgggatccaagacttatcatctcgaaattctttcatttgccatatcagaaaatcggtt 343  Q
    |||||||| ||||||| ||||||||| || | |||||| ||| |  ||||||| | ||||| ||  ||||| ||||| |||||||| ||||||||||||    
22542 tcatgatttatttgaagattttgataccttattttaagaaactgagtccaagattcatcatttcctaattccttcatctgccatataagaaaatcggtt 22640  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 6942715 - 6942753
Alignment:
18 aacttactttcaagaaggtgaaaccaagctttcaacata 56  Q
    ||||||||||||||||| ||| |||||||||||||||||    
6942715 aacttactttcaagaagttgataccaagctttcaacata 6942753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0354 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0354
Description:

Target: scaffold0354; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 267 - 332
Target Start/End: Complemental strand, 7534 - 7469
Alignment:
267 gatagctaaatttaaggaacgggatccaagacttatcatctcgaaattctttcatttgccatatca 332  Q
    ||||||||| |||||||||  | | |||||||| |||| ||| |||||| ||||||||||||||||    
7534 gatagctaattttaaggaattgaacccaagactcatcaactccaaattccttcatttgccatatca 7469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 58
Target Start/End: Original strand, 16131 - 16172
Alignment:
17 gaacttactttcaagaaggtgaaaccaagctttcaacataat 58  Q
    |||||||||||||| ||| ||||||||||||||| |||||||    
16131 gaacttactttcaacaagttgaaaccaagctttcgacataat 16172  T

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