View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15035_low_3 (Length: 501)
Name: NF15035_low_3
Description: NF15035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15035_low_3 |
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| [»] scaffold0011 (2 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 238; Significance: 1e-131; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 226 - 487
Target Start/End: Original strand, 14662584 - 14662845
Alignment:
| Q |
226 |
acataagaatttgaagaatctctagtcacatggaagaaaggaatgtgattaccatcgccaagttgtgtttcatcatcatcaaaatcctcaacattttcaa |
325 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
14662584 |
acataagaatttgaagaatctctagtcacatggaagaaaggaatgtgattaccatagccaagttgtgtttcatcatcatcagaatcctcaacattttcaa |
14662683 |
T |
|
| Q |
326 |
atgtattaagtcccaacgatttcgaaatttgagcaatcactgcagccaaaacacataaatcacaatataagtcaaattataggtgaaagttcataaaaac |
425 |
Q |
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||||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14662684 |
atgtattaagtcccaacgatttcgaaatttgagcactcactgcggccaaaacacacaaatcacaatataagtcaaattataggtgaaagttcataaaaac |
14662783 |
T |
|
| Q |
426 |
attatatcaaatagatgggggaggcaaaagtaagtggaaaattaactaaaatgggacaaaag |
487 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
14662784 |
attatatcaaatagatgggggaggcaaaagtaagtggaaaattaactcaaatgggacaaaag |
14662845 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 11 - 195
Target Start/End: Original strand, 14662352 - 14662536
Alignment:
| Q |
11 |
cagaggcaggaataaaagaattaccatgtttttccaacaattttgacggaggagatcagtgacaaatttgataaagcatttggcgacatccattcaacag |
110 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
14662352 |
cagaggaaggaataaaagaattaccatgtttttccaacaattttgacggatgagatcagtgccaaatttgataaagcatttggcgacatcgattcaacag |
14662451 |
T |
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| Q |
111 |
tggagagacgtaataaagaacaaacaatnnnnnnnctaaggacatattagaggttgtctgaggcatgattccaaattacaaaatg |
195 |
Q |
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| T |
14662452 |
tggagagaagtaataaagaacaaacaataaaaaaactaaggacatattagagattgtctgaggcatgattccaaattacaaaatg |
14662536 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 224 - 326
Target Start/End: Complemental strand, 25284839 - 25284737
Alignment:
| Q |
224 |
tcacataagaatttgaagaatctctagtcacatggaagaaaggaatgtgattaccatcgccaagttgtgtttcatcatcatcaaaatcctcaacattttc |
323 |
Q |
| |
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||||||||||||||| |||||||| |||||| || | ||||||||||||||| |||| | |||||||||| ||||||||||| |||| |||||||| || |
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| T |
25284839 |
tcacataagaatttgtagaatctccggtcacagggtaaaaaggaatgtgattatcatcactaagttgtgttccatcatcatcagaatcatcaacattatc |
25284740 |
T |
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| Q |
324 |
aaa |
326 |
Q |
| |
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||| |
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| T |
25284739 |
aaa |
25284737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 213; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 224 - 466
Target Start/End: Complemental strand, 5080954 - 5080715
Alignment:
| Q |
224 |
tcacataagaatttgaagaatctctagtcacatggaagaaaggaatgtgattaccatcgccaagttgtgtttcatcatcatcaaaatcctcaacattttc |
323 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
5080954 |
tcacataagaatttgaagaatctctagtcacatggaagaaaggaatgtgattaccatcgccaagttgtgtttcatcatcatcagaatcctcaacattttc |
5080855 |
T |
|
| Q |
324 |
aaatgtattaagtcccaacgatttcgaaatttgagcaatcactgcagccaaaacacataaatcacaatataagtcaaattataggtgaaagttcataaaa |
423 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||| |
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| T |
5080854 |
aaatgtattaagtcccaacgatttcgaaatttgagcactcactgcagccaaaacacacaaat---aatataagtcaaattataggtgaaagttcataaaa |
5080758 |
T |
|
| Q |
424 |
acattatatcaaatagatgggggaggcaaaagtaagtggaaaa |
466 |
Q |
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| T |
5080757 |
acattatatcaaaaagatgggggaggcaaaagtaagtggaaaa |
5080715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 11 - 195
Target Start/End: Complemental strand, 5081180 - 5080996
Alignment:
| Q |
11 |
cagaggcaggaataaaagaattaccatgtttttccaacaattttgacggaggagatcagtgacaaatttgataaagcatttggcgacatccattcaacag |
110 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||||||||| ||||||||||||||||| ||||||||| |
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| T |
5081180 |
cagaggaaggaataaaagaattaccatgtttttccaacaatcttgacggatgagatcagtgccaaatttgattaagcatttggcgacatcgattcaacag |
5081081 |
T |
|
| Q |
111 |
tggagagacgtaataaagaacaaacaatnnnnnnnctaaggacatattagaggttgtctgaggcatgattccaaattacaaaatg |
195 |
Q |
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| T |
5081080 |
tggagagaagtaataaagaacaaacaataaacaaactaaggacatattagaggttgtctgaggcataattccaaattacaaaatg |
5080996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 397 - 459
Target Start/End: Complemental strand, 40948034 - 40947972
Alignment:
| Q |
397 |
tcaaattataggtgaaagttcataaaaacattatatcaaatagatgggggaggcaaaagtaag |
459 |
Q |
| |
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||||||||||||| ||||||||| ||| |||||||||| || ||| ||||||||||||||| |
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| T |
40948034 |
tcaaattataggttaaagttcatcaaaggattatatcaagcaggtggtggaggcaaaagtaag |
40947972 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 181; Significance: 1e-97; HSPs: 2)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 228 - 466
Target Start/End: Original strand, 207216 - 207453
Alignment:
| Q |
228 |
ataagaatttgaagaatctctagtcacat-----ggaagaaaggaatgtgattaccatcgccaagttgtgtttcatcatcatcaaaatcctcaacatttt |
322 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
207216 |
ataagaatttgaagaatctctagtcacatcacatggaagaaaggaatgtgattaccatcgccaagttgtgtttcatcatcatc------ctcaacatttt |
207309 |
T |
|
| Q |
323 |
caaatgtattaagtcccaacgatttcgaaatttgagcaatcactgcagccaaaacacataaatcacaatataagtcaaattataggtgaaagttcataaa |
422 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||| || |
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| T |
207310 |
caaatgtattaagtcccaacgatttcgaaatttgagcactcactgcagccaaaacacacaaatcacaatataggtcaaattataggtgaaagttcatcaa |
207409 |
T |
|
| Q |
423 |
aacattatatcaaatagatgggggaggcaaaagtaagtggaaaa |
466 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
207410 |
aacattatatcaaacagatgggggaggcaaaagtaagtggaaaa |
207453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 18 - 191
Target Start/End: Original strand, 207041 - 207214
Alignment:
| Q |
18 |
aggaataaaagaattaccatgtttttccaacaattttgacggaggagatcagtgacaaatttgataaagcatttggcgacatccattcaacagtggagag |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||| ||| |||||||||| ||| ||||||||||||| |||||||||||||||| |
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| T |
207041 |
aggaataaaagaattaccatgtttttccaacaattttgacggatgagatcggtgccaaatttgattaagaatttggcgacatcgattcaacagtggagag |
207140 |
T |
|
| Q |
118 |
acgtaataaagaacaaacaatnnnnnnnctaaggacatattagaggttgtctgaggcatgattccaaattacaa |
191 |
Q |
| |
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| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
207141 |
aagtaataaagaacaaacaataaacaaactaaggacatattagaggttgtctgaggcatgattccaaatcacaa |
207214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 146 - 187
Target Start/End: Original strand, 7235361 - 7235402
Alignment:
| Q |
146 |
ctaaggacatattagaggttgtctgaggcatgattccaaatt |
187 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7235361 |
ctaaggacatattagaggttgtgtgaggcatgattccaaatt |
7235402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 352 - 396
Target Start/End: Original strand, 22623724 - 22623768
Alignment:
| Q |
352 |
atttgagcaatcactgcagccaaaacacataaatcacaatataag |
396 |
Q |
| |
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||||||||| ||||||||||||||||||| |||||| | |||||| |
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| T |
22623724 |
atttgagcactcactgcagccaaaacacacaaatcatagtataag |
22623768 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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