View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15035_low_4 (Length: 475)

Name: NF15035_low_4
Description: NF15035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15035_low_4
NF15035_low_4
[»] chr5 (4 HSPs)
chr5 (186-458)||(2906140-2906412)
chr5 (12-183)||(2906479-2906650)
chr5 (194-315)||(2902040-2902164)
chr5 (12-67)||(2902480-2902535)


Alignment Details
Target: chr5 (Bit Score: 245; Significance: 1e-136; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 186 - 458
Target Start/End: Complemental strand, 2906412 - 2906140
Alignment:
Q  186 tagaaaaaagcagaaactggaaggggaaacatccatgtcacacctagtaggtgataccgacgacttcttcattgagctgttccaatgattttttatagca 285  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2906412 tagaaaaaagcagaaactggaaggggaaacatccatgtcacacctagtaggtgataccgacgacttcttcattgagctgttccaatgattttttatagca 2906313  T
Q  286 ttgtcactcatgtcttacccaaataatacagaattaccacactgcataaatgcatgttttatcaata--gctcaagtataattgttctaattttatgtct 383  Q
    ||  |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||    
T  2906312 tt--cactcatgtcttacccaaataatacagaattatcacactgcataaatgcatgttttatcaatatagctcaagtataattgttctaattttatgtct 2906215  T
Q  384 tctccgatttttgagggagaggatatgtgacagaactcataagttgctgagaaaagctaactgaatttataaagt 458  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2906214 tctccgatttttgagggagaggacatgtgacagaactcataagttgctgagaaaagctaactgaatttataaagt 2906140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 12 - 183
Target Start/End: Complemental strand, 2906650 - 2906479
Alignment:
Q  12 atagggctcataagtaacagtactagaaggagggaaacaatccatatttgtagcaaatatatgtagcaagcatatccatccacgagttcgagttcatgtg 111  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  2906650 atagggctcataagtaacagtactagaaggagggaaacaatccatatttgtagcaaatatttgtagcaagcatatccatccacgagttcgagttcatgtg 2906551  T
Q  112 tttaaccgcaatgttggcatctttgcaacctataactgtttccatctcatttggtaaattgatcaattttct 183  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  2906550 tttaaccgcaatgttggcatctttgcaacctataactgtttccatctcatttggtaaattaatcaatcttct 2906479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 194 - 315
Target Start/End: Complemental strand, 2902164 - 2902040
Alignment:
Q  194 agcagaaactggaaggggaaacatccatgtcacacctagtaggtgataccgacgacttcttc---attgagctgttccaatgattttttatagcattgtc 290  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| | || |||||||||   |||||||||||||||||||||||||||||||||||    
T  2902164 agcagaaactggaagtggaaacatccatgtcacacctagtaggtgatgctgatgacttcttcttcattgagctgttccaatgattttttatagcattgtc 2902065  T
Q  291 actcatgtcttacccaaataataca 315  Q
    |||| |||||||||||||| |||||    
T  2902064 actcctgtcttacccaaatgataca 2902040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 12 - 67
Target Start/End: Complemental strand, 2902535 - 2902480
Alignment:
Q  12 atagggctcataagtaacagtactagaaggagggaaacaatccatatttgtagcaa 67  Q
    ||||| ||| |||||||||||||| |||| ||||||||||||||||||||| ||||    
T  2902535 ataggcctcgtaagtaacagtactggaagaagggaaacaatccatatttgttgcaa 2902480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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