View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15035_low_6 (Length: 453)
Name: NF15035_low_6
Description: NF15035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15035_low_6 |
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Alignment Details
Target: chr8 (Bit Score: 419; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 419; E-Value: 0
Query Start/End: Original strand, 17 - 439
Target Start/End: Complemental strand, 18407454 - 18407032
Alignment:
| Q |
17 |
caccacatccattgcaatcctggacgacgaacatgcagtacagggctgcatgcaaccatcaaatttcttcttcccaagaatcctcccatacaaaagaaac |
116 |
Q |
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| T |
18407454 |
caccacatccattgcaatcctggacgacgaacatgcagtacagggctgcatgcaaccatcaaatttcttcttcccaagaatcctcccatacaaaagaaac |
18407355 |
T |
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| Q |
117 |
cgaaaatcaaaatcagatttcggtctcatggaaggtggccgtcttccagaattaatggcagaaccaactaatgtccgatcaatgtcattcgttggaacac |
216 |
Q |
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| T |
18407354 |
cgaaaatcaaaatcagatttcggtctcatggtaggtggccgtcttccagaattaatggcagaaccaactaatgtccgatcaatgtcattcgttggaacac |
18407255 |
T |
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| Q |
217 |
atgagtatcttgctccagaaatcgtgcgtggtgaaggacacggtagtgctgttgattggtggacttttggcatatttttatacgagcttttatacggaac |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18407254 |
atgagtatcttgctccagaaatcgtgcgtggtgaaggacacggtagtgctgttgattggtggacttttggcatatttttatacgagcttttatacggaac |
18407155 |
T |
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| Q |
317 |
aacaccgtttaaaggtaatggaaaccgagcaacgctttttaatgttgtagggcagcctttaaggtttcctgaccatccttccgctagtccggtagcgagg |
416 |
Q |
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| T |
18407154 |
aacaccgtttaaaggtaatggaaaccgagcaacgctttttaatgttgtagggcagcctttaaggtttcctgaccatccttccgctagtccggtagcgagg |
18407055 |
T |
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| Q |
417 |
gatcttattagagggttgttggt |
439 |
Q |
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| T |
18407054 |
gatcttattagagggttgttggt |
18407032 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 159 - 292
Target Start/End: Complemental strand, 26569591 - 26569458
Alignment:
| Q |
159 |
cttccagaattaatggcagaaccaactaatgtccgatcaatgtcattcgttggaacacatgagtatcttgctccagaaatcgtgcgtggtgaaggacacg |
258 |
Q |
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||||| ||| |||||||||||||||| ||||| ||||||||||||| || || ||||| |||||||| || || |||||| | || |||||||||| |
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| T |
26569591 |
cttcctgaactaatggcagaaccaaccaatgtaagatcaatgtcatttgtaggcacacacgagtatctcgcacctgaaatcatcaaaggagaaggacacg |
26569492 |
T |
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| Q |
259 |
gtagtgctgttgattggtggacttttggcatatt |
292 |
Q |
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| T |
26569491 |
gtagtgcggtagattggtggactttcggaatatt |
26569458 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 302
Target Start/End: Complemental strand, 9940681 - 9940625
Alignment:
| Q |
246 |
ggtgaaggacacggtagtgctgttgattggtggacttttggcatatttttatacgag |
302 |
Q |
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|||||||| ||||| ||||| |||||||||||||||| ||| || ||| |||||||| |
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| T |
9940681 |
ggtgaaggtcacggcagtgcagttgattggtggacttatggaatctttctatacgag |
9940625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 249 - 307
Target Start/End: Complemental strand, 12233825 - 12233767
Alignment:
| Q |
249 |
gaaggacacggtagtgctgttgattggtggacttttggcatatttttatacgagctttt |
307 |
Q |
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| T |
12233825 |
gaaggtcacggcagtgctgtagactggtggacatttggtatattcttatacgagctttt |
12233767 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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