View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF15035_low_8 (Length: 387)
Name: NF15035_low_8
Description: NF15035
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF15035_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 6 - 375
Target Start/End: Original strand, 8641529 - 8641898
Alignment:
| Q |
6 |
aggtactgcttttgaaaataaatcagttctcaatctatactttcttgacagtggagattattccaaagttccgacgattcatggttatgattggatcaag |
105 |
Q |
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| T |
8641529 |
aggtactgtctttgaaaataaatcagttctcaatctatactttcttgacagtggagattattccaaagttccgacgattcctggttatgattggatcaag |
8641628 |
T |
|
| Q |
106 |
ccctcacagcaactttggtttgagcgaacgtctgctaatcttcgggtactatcacattagcttataccaaattatctagtttctctttattgtttagtat |
205 |
Q |
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| T |
8641629 |
ccctcacagcaactttggtttgagcgaacgtctgctaatcttcgggtactatcacattagcttataccaaattatctagtttctctttattgtttagtat |
8641728 |
T |
|
| Q |
206 |
ctgacttcactctttatttattctgcagaatgcatatataaaaggaccggcgccacaaaaagaagctgctcctggtcttgcatactttcacatccccttg |
305 |
Q |
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| T |
8641729 |
ctgacttcactctttatttattctgcagaatgcatatataaaaggaccggcgccacaaaaagaagctgctcctggtcttgcatactttcacatcccctta |
8641828 |
T |
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| Q |
306 |
ccggaatatgcaagtcttgattcatcaaacatgacaggtgtgaaaatggaaatggatggcggtgatggca |
375 |
Q |
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| T |
8641829 |
ccggaatatgcaagtcttgattcatcaaacatgacaggtgtgaaaatggaaacatatagcggtgatggca |
8641898 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 6 - 375
Target Start/End: Original strand, 8648109 - 8648478
Alignment:
| Q |
6 |
aggtactgcttttgaaaataaatcagttctcaatctatactttcttgacagtggagattattccaaagttccgacgattcatggttatgattggatcaag |
105 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
8648109 |
aggtactgtctttgaaaataaatcagttctcaatctatactttcttgacagtggagattattccaaagttccgacgattcctggttatgattggatcaag |
8648208 |
T |
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| Q |
106 |
ccctcacagcaactttggtttgagcgaacgtctgctaatcttcgggtactatcacattagcttataccaaattatctagtttctctttattgtttagtat |
205 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8648209 |
ccctcacagcaactttggtttgagcgaacgtctgctaatcttcgggtactatcacattagcttataccaaattatctagtttctctttattgtttagtat |
8648308 |
T |
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| Q |
206 |
ctgacttcactctttatttattctgcagaatgcatatataaaaggaccggcgccacaaaaagaagctgctcctggtcttgcatactttcacatccccttg |
305 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8648309 |
ctgacttcactctttatttattctgcagaatgcatatataaaaggaccggcgccacaaaaagaagctgctcctggtcttgcatactttcacatcccctta |
8648408 |
T |
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| Q |
306 |
ccggaatatgcaagtcttgattcatcaaacatgacaggtgtgaaaatggaaatggatggcggtgatggca |
375 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
8648409 |
ccggaatatgcaagtcttgattcatcaaacatgacaggtgtgaaaatggaaacatatagcggtgatggca |
8648478 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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