View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF15036_high_1 (Length: 728)

Name: NF15036_high_1
Description: NF15036
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF15036_high_1
NF15036_high_1
[»] chr4 (4 HSPs)
chr4 (408-711)||(4250247-4250589)
chr4 (321-404)||(4250638-4250721)
chr4 (182-265)||(4251220-4251304)
chr4 (282-322)||(4251116-4251156)
[»] chr1 (7 HSPs)
chr1 (408-711)||(2800933-2801275)
chr1 (152-322)||(2801748-2801923)
chr1 (321-404)||(2801324-2801407)
chr1 (70-152)||(2801949-2802033)
chr1 (15-83)||(2802054-2802122)
chr1 (581-645)||(2392826-2392890)
chr1 (345-390)||(2392488-2392533)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-103; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 408 - 711
Target Start/End: Complemental strand, 4250589 - 4250247
Alignment:
Q  408 gtgtcttttgctatttgctactttacacaaaagactgcccctaaaaaacaaa------------ctcaaaatgaatgtgctcaattttacagtatctgca 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||| |||||||||    
T  4250589 gtgtcttttgctatttgctactttacacaaaagactgcccctaaaaaacaaattcaaagcacaactcaaaatgaatgtgctcaattttactgtatctgca 4250490  T
Q  496 tggagagttactattgaaacttaatgtctatacttgagataattaataatttcatatttcaaaactgacacgtaccaa--------------------tg 575  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                    ||    
T  4250489 aggagagttactattgaaacttaatgtctatacttgagataattaataatttcatatttcaaaactgacacgtaccaaaaaatattataaagatactttg 4250390  T
Q  576 gccaagaagacaggttatgtgacttgctttagcttctcttctacaagctcaatgcaccgatacaacaccaacttgagtggattaagggtgca-------t 668  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||       |    
T  4250389 gccaagaagacaggttatgtgacttgctttagcttctcttctacaagctcaatgcaccgatacaacaccaactcgagtggattaagggtgcatagagtgt 4250290  T
Q  669 caattgtaagctcatcataatcactcttgttctctgccattat 711  Q
    |||||| |||||||||||||||||||||||||||| |||||||    
T  4250289 caattgcaagctcatcataatcactcttgttctctaccattat 4250247  T

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Target: chr4; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 321 - 404
Target Start/End: Complemental strand, 4250721 - 4250638
Alignment:
Q  321 cttgaagaataacagcatcaaattgtatgatctccttaaactaagcaactcttcattactaatccacactcgatagccttttca 404  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  4250721 cttgaagaataacagcatcaaattgtatgatctccttaaactaagcaactcttcattactaatccacactcaatagccttttca 4250638  T

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Target: chr4; HSP #3
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 182 - 265
Target Start/End: Complemental strand, 4251304 - 4251220
Alignment:
Q  182 caagccaaccaagtaattgcat--agtactcctgtctcattggacattgtatatcattttaacccaaaaaatgtctcattttatac 265  Q
    |||||||||||| |||||||||  ||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  4251304 caagccaaccaattaattgcatgtagtactcctctctcattggacattgtatatcattttaaccca-aaaatgtctcattttatac 4251220  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 282 - 322
Target Start/End: Complemental strand, 4251156 - 4251116
Alignment:
Q  282 tataatttaggaaagtgtttatgatactcatgtaattagct 322  Q
    |||||||||||||| |||||||||||||||||| |||||||    
T  4251156 tataatttaggaaaatgtttatgatactcatgttattagct 4251116  T

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Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 408 - 711
Target Start/End: Complemental strand, 2801275 - 2800933
Alignment:
Q  408 gtgtcttttgctatttgctactttacacaaaagactgcccctaaaaaacaaa------------ctcaaaatgaatgtgctcaattttacagtatctgca 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||||||||||| |||||||||    
T  2801275 gtgtcttttgctatttgctactttacacaaaagactgcccctaaaaaacaaattcaaagcacaactcaaaatgaatgtgctcaattttactgtatctgca 2801176  T
Q  496 tggagagttactattgaaacttaatgtctatacttgagataattaataatttcatatttcaaaactgacacgtaccaa--------------------tg 575  Q
     |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||                    ||    
T  2801175 aggagagttactattgaaacttaatgtctatacttaagataattaataatttcatatttcaaaactgacacgtaccaaaaaatattttaaagatactttg 2801076  T
Q  576 gccaagaagacaggttatgtgacttgctttagcttctcttctacaagctcaatgcaccgatacaacaccaacttgagtggattaagggtgca-------t 668  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||       |    
T  2801075 gccaagaagacaggttatgtgacttgctttagcttctcttctacaagctcaatgcaccgatacaacaccaactcgagtggattaagggtgcatagagtgt 2800976  T
Q  669 caattgtaagctcatcataatcactcttgttctctgccattat 711  Q
    |||||| |||||||||||||||||||||||||||| |||||||    
T  2800975 caattgcaagctcatcataatcactcttgttctcttccattat 2800933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 148; E-Value: 1e-77
Query Start/End: Original strand, 152 - 322
Target Start/End: Complemental strand, 2801923 - 2801748
Alignment:
Q  152 atgtatgagctcagaatgctaactaaacaacaagccaaccaagtaattgcatagtactcctgtctcattggacattgtatatcattttaacccaaaaaat 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2801923 atgtatgagctcagaatgctaactaaacaacaagccaaccaagtaattgcatagtactcctgtctcattggacattgtatatcattttaacccaaaaaat 2801824  T
Q  252 gtctcattttataccatgttattaaatgtttataatttagg-----aaagtgtttatgatactcatgtaattagct 322  Q
    ||| |||||||||||||||||||||||||||||||||||||     |||||||||||||||||||||| |||||||    
T  2801823 gtcacattttataccatgttattaaatgtttataatttaggaaaggaaagtgtttatgatactcatgttattagct 2801748  T

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Target: chr1; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 321 - 404
Target Start/End: Complemental strand, 2801407 - 2801324
Alignment:
Q  321 cttgaagaataacagcatcaaattgtatgatctccttaaactaagcaactcttcattactaatccacactcgatagccttttca 404  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  2801407 cttgaagaataacagcatcaaattgtatgatctccataaactaagcaactcttcattactattccacactcaatagccttttca 2801324  T

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Target: chr1; HSP #4
Raw Score: 70; E-Value: 4e-31
Query Start/End: Original strand, 70 - 152
Target Start/End: Complemental strand, 2802033 - 2801949
Alignment:
Q  70 aacaaatatacaattattttt--aagaaactaaaatgaaatttcttatacattataaacacgaatgaagcaaatgaaacttatga 152  Q
    ||||||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2802033 aacaaatatacaattttttttttaagaaactaaaatgaaatttcttatacattataaacacgaatgaagcaaatgaaacttatga 2801949  T

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Target: chr1; HSP #5
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 15 - 83
Target Start/End: Complemental strand, 2802122 - 2802054
Alignment:
Q  15 tataacttaattatatttcgttaaataacagcaattaaatttaacattatacaataacaaatatacaat 83  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2802122 tataacataattatatttcgttaaataacagcaattaaatttaacattatacaataacaaatatacaat 2802054  T

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Target: chr1; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 581 - 645
Target Start/End: Original strand, 2392826 - 2392890
Alignment:
Q  581 gaagacaggttatgtgacttgctttagcttctcttctacaagctcaatgcaccgatacaacacca 645  Q
    |||||||| |||||||| ||| |||||||||||||||||||||||||| |||||| |||||||||    
T  2392826 gaagacagcttatgtgatttgatttagcttctcttctacaagctcaatacaccgagacaacacca 2392890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 345 - 390
Target Start/End: Original strand, 2392488 - 2392533
Alignment:
Q  345 gtatgatctccttaaactaagcaactcttcattactaatccacact 390  Q
    |||||||| |||||||||||| ||||||||||||||||||||||||    
T  2392488 gtatgatccccttaaactaagtaactcttcattactaatccacact 2392533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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